Wall clock time and date at job start Tue Mar 31 2020 20:24:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36933 * 119.99814 * 2 1
4 4 H 1.08006 * 119.99647 * 183.21328 * 3 2 1
5 5 C 1.38806 * 120.00087 * 3.20917 * 3 2 1
6 6 N 1.31622 * 120.00168 * 5.44748 * 5 3 2
7 7 Si 1.86807 * 120.00235 * 185.45124 * 5 3 2
8 8 H 1.48501 * 109.46944 * 89.99872 * 7 5 3
9 9 H 1.48492 * 109.47234 * 209.99872 * 7 5 3
10 10 H 1.48497 * 109.46639 * 329.99995 * 7 5 3
11 11 C 1.46503 * 120.00025 * 179.97438 * 2 1 3
12 12 C 1.52999 * 109.47078 * 267.26792 * 11 2 1
13 13 H 1.09000 * 109.99647 * 51.94435 * 12 11 2
14 14 C 1.54318 * 109.88797 * 290.84408 * 12 11 2
15 15 C 1.55150 * 102.94505 * 218.39099 * 14 12 11
16 16 C 1.54688 * 101.67921 * 35.33097 * 15 14 12
17 17 N 1.47022 * 109.88241 * 173.03340 * 12 11 2
18 18 C 1.34779 * 125.64621 * 298.32578 * 17 12 11
19 19 O 1.21623 * 120.00570 * 2.27781 * 18 17 12
20 20 C 1.47169 * 119.99853 * 182.27971 * 18 17 12
21 21 C 1.38396 * 126.88395 * 172.14875 * 20 18 17
22 22 C 1.39678 * 105.36208 * 180.02562 * 21 20 18
23 23 C 1.50691 * 126.07250 * 179.97438 * 22 21 20
24 24 C 1.53004 * 109.47084 * 75.00004 * 23 22 21
25 25 C 1.53006 * 109.47140 * 195.00176 * 23 22 21
26 26 C 1.53002 * 109.47368 * 315.00016 * 23 22 21
27 27 N 1.30866 * 107.85538 * 0.02562 * 22 21 20
28 28 N 1.28442 * 110.93221 * 359.97438 * 27 22 21
29 29 H 0.96998 * 125.19358 * 179.97438 * 28 27 22
30 30 H 1.09010 * 109.46853 * 179.11948 * 1 2 3
31 31 H 1.09005 * 109.47104 * 299.11479 * 1 2 3
32 32 H 1.08990 * 109.47384 * 59.12291 * 1 2 3
33 33 H 0.96996 * 120.00052 * 179.97438 * 6 5 3
34 34 H 1.09004 * 109.46986 * 147.27150 * 11 2 1
35 35 H 1.08998 * 109.47391 * 27.27273 * 11 2 1
36 36 H 1.09001 * 110.71771 * 336.75669 * 14 12 11
37 37 H 1.09003 * 110.72301 * 99.84468 * 14 12 11
38 38 H 1.09004 * 111.00802 * 153.57357 * 15 14 12
39 39 H 1.09000 * 111.00440 * 277.38823 * 15 14 12
40 40 H 1.08997 * 110.39662 * 204.36669 * 16 15 14
41 41 H 1.09004 * 110.23248 * 82.11131 * 16 15 14
42 42 H 1.07999 * 127.32171 * 359.77504 * 21 20 18
43 43 H 1.09001 * 109.47019 * 60.00307 * 24 23 22
44 44 H 1.09001 * 109.46763 * 179.97438 * 24 23 22
45 45 H 1.08994 * 109.47250 * 300.00103 * 24 23 22
46 46 H 1.08996 * 109.47365 * 59.99905 * 25 23 22
47 47 H 1.09005 * 109.46748 * 180.02562 * 25 23 22
48 48 H 1.09004 * 109.46568 * 299.99699 * 25 23 22
49 49 H 1.09004 * 109.46940 * 59.99889 * 26 23 22
50 50 H 1.08996 * 109.47244 * 179.97438 * 26 23 22
51 51 H 1.08996 * 109.46931 * 299.99968 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1859 0.0000
4 1 3.2284 1.1866 -0.0524
5 6 1.4572 2.3870 0.0673
6 7 0.1522 2.3857 0.2390
7 14 2.3774 4.0055 -0.0859
8 1 2.4385 4.4068 -1.5144
9 1 1.6693 5.0531 0.6926
10 1 3.7557 3.8431 0.4421
11 6 2.1975 -1.2688 0.0006
12 6 2.5121 -1.6754 1.4416
13 1 1.6020 -1.6566 2.0413
14 6 3.5568 -0.7118 2.0428
15 6 4.4516 -1.6543 2.8904
16 6 4.4569 -2.9393 2.0292
17 7 3.0979 -3.0237 1.4642
18 6 2.4907 -4.1510 1.0433
19 8 1.3762 -4.0973 0.5594
20 6 3.1765 -5.4471 1.1693
21 6 2.6376 -6.6988 0.9282
22 6 3.6715 -7.6023 1.1846
23 6 3.5886 -9.1023 1.0665
24 6 3.6061 -9.4993 -0.4111
25 6 4.7845 -9.7369 1.7793
26 6 2.2910 -9.5938 1.7112
27 7 4.7246 -6.9149 1.5467
28 7 4.4721 -5.6556 1.5487
29 1 5.1046 -4.9590 1.7842
30 1 -0.3633 -1.0277 -0.0158
31 1 -0.3633 0.5000 0.8979
32 1 -0.3633 0.5273 -0.8819
33 1 -0.3316 3.2251 0.2864
34 1 3.1279 -1.1514 -0.5551
35 1 1.5882 -2.0404 -0.4700
36 1 4.1384 -0.2333 1.2549
37 1 3.0745 0.0359 2.6724
38 1 5.4577 -1.2480 2.9953
39 1 4.0052 -1.8434 3.8666
40 1 4.6647 -3.8112 2.6493
41 1 5.1948 -2.8554 1.2314
42 1 1.6305 -6.9285 0.6131
43 1 4.5305 -9.1492 -0.8704
44 1 3.5466 -10.5843 -0.4965
45 1 2.7542 -9.0472 -0.9189
46 1 4.7721 -9.4541 2.8318
47 1 4.7247 -10.8219 1.6934
48 1 5.7089 -9.3868 1.3198
49 1 1.4390 -9.1417 1.2034
50 1 2.2309 -10.6787 1.6254
51 1 2.2786 -9.3110 2.7638
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001281940545.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:24:25
Heat of formation + Delta-G solvation = 72.410235 kcal
Electronic energy + Delta-G solvation = -29797.573766 eV
Core-core repulsion = 25927.811732 eV
Total energy + Delta-G solvation = -3869.762034 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-42.76285 -39.88069 -37.39877 -37.14354 -35.39185 -32.17160 -31.45768 -31.16639
-30.49122 -28.95404 -27.47652 -27.44220 -25.90205 -25.51623 -24.09715 -22.92191
-21.87967 -21.28154 -20.72039 -19.73993 -18.85488 -17.54748 -16.98279 -16.37889
-16.01156 -15.72357 -15.30437 -14.84387 -14.65194 -14.32111 -14.02310 -13.95522
-13.76695 -13.67129 -13.30856 -13.09155 -12.95321 -12.62595 -12.49861 -12.36797
-12.20710 -11.90932 -11.85732 -11.51872 -11.31700 -11.22358 -11.15501 -11.09846
-10.95348 -10.80309 -10.68450 -10.53998 -10.41713 -10.12754 -9.97417 -9.73976
-9.60685 -9.27396 -9.20188 -8.69661 -8.45020 -6.88493 -5.60660 -3.06067
1.23231 2.43164 2.63804 2.96368 3.26060 3.37211 3.42428 3.44750
4.14777 4.33714 4.46091 4.50966 4.56380 4.78664 4.79329 4.91931
4.99657 5.14469 5.17558 5.36091 5.40321 5.42643 5.46398 5.54351
5.56541 5.59557 5.60149 5.69835 5.70737 5.71437 5.83694 5.86185
5.93519 5.95226 6.10542 6.13507 6.21768 6.26223 6.37554 6.50008
6.58706 6.73547 6.80317 6.91394 6.94554 7.54446 7.66177 7.75381
7.85678 7.98890 8.18283 8.40381 9.28353 9.91593 10.35980 11.36707
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.025462 B = 0.002530 C = 0.002392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1099.412008 B =11062.498884 C =11704.747191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.167 3.833
2 N -0.604 5.604
3 C -0.242 4.242
4 H 0.074 0.926
5 C -0.006 4.006
6 N -0.916 5.916
7 Si 0.906 3.094
8 H -0.289 1.289
9 H -0.292 1.292
10 H -0.282 1.282
11 C 0.148 3.852
12 C 0.116 3.884
13 H 0.074 0.926
14 C -0.107 4.107
15 C -0.134 4.134
16 C 0.084 3.916
17 N -0.608 5.608
18 C 0.598 3.402
19 O -0.513 6.513
20 C -0.025 4.025
21 C -0.153 4.153
22 C 0.038 3.962
23 C 0.017 3.983
24 C -0.138 4.138
25 C -0.134 4.134
26 C -0.139 4.139
27 N -0.273 5.273
28 N -0.386 5.386
29 H 0.443 0.557
30 H -0.005 1.005
31 H 0.054 0.946
32 H 0.031 0.969
33 H 0.249 0.751
34 H 0.040 0.960
35 H 0.056 0.944
36 H 0.081 0.919
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.074 0.926
40 H 0.064 0.936
41 H 0.074 0.926
42 H 0.162 0.838
43 H 0.056 0.944
44 H 0.061 0.939
45 H 0.060 0.940
46 H 0.055 0.945
47 H 0.056 0.944
48 H 0.060 0.940
49 H 0.061 0.939
50 H 0.062 0.938
51 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.404 -21.280 5.236 24.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.328 5.328
3 C -0.371 4.371
4 H 0.091 0.909
5 C -0.203 4.203
6 N -0.564 5.564
7 Si 0.737 3.263
8 H -0.217 1.217
9 H -0.218 1.218
10 H -0.207 1.207
11 C 0.019 3.981
12 C 0.011 3.989
13 H 0.092 0.908
14 C -0.145 4.145
15 C -0.172 4.172
16 C -0.040 4.040
17 N -0.343 5.343
18 C 0.384 3.616
19 O -0.386 6.386
20 C -0.153 4.153
21 C -0.182 4.182
22 C -0.120 4.120
23 C 0.015 3.985
24 C -0.196 4.196
25 C -0.192 4.192
26 C -0.197 4.197
27 N -0.106 5.106
28 N -0.108 5.108
29 H 0.295 0.705
30 H 0.014 0.986
31 H 0.072 0.928
32 H 0.049 0.951
33 H 0.060 0.940
34 H 0.059 0.941
35 H 0.074 0.926
36 H 0.099 0.901
37 H 0.106 0.894
38 H 0.102 0.898
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.092 0.908
42 H 0.180 0.820
43 H 0.075 0.925
44 H 0.080 0.920
45 H 0.079 0.921
46 H 0.075 0.925
47 H 0.075 0.925
48 H 0.079 0.921
49 H 0.080 0.920
50 H 0.081 0.919
51 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 10.703 -21.205 5.260 24.328
hybrid contribution 0.079 1.556 -0.072 1.559
sum 10.782 -19.649 5.188 23.006
Atomic orbital electron populations
1.21088 0.81387 0.93389 1.01883 1.44026 1.02525 1.00245 1.85955
1.19284 0.90818 0.83535 1.43481 0.90854 1.24864 0.95790 0.97770
1.01828 1.70223 1.05752 1.24510 1.55895 0.86215 0.78562 0.83899
0.77610 1.21673 1.21794 1.20738 1.21065 0.96233 0.88899 0.91931
1.22863 0.96209 0.77784 1.02034 0.90776 1.22589 0.96057 0.96617
0.99272 1.22784 1.01441 0.94428 0.98580 1.22519 0.85344 0.99076
0.97070 1.48714 1.15859 1.08047 1.61687 1.16606 0.85151 0.80855
0.78992 1.90867 1.18387 1.85304 1.44068 1.21856 0.86958 0.96312
1.10179 1.21960 1.01197 0.89309 1.05689 1.21875 0.89950 0.96313
1.03902 1.18899 0.96820 0.86191 0.96558 1.21873 1.02446 1.01209
0.94076 1.21764 0.97283 0.99675 1.00434 1.21884 0.96053 1.00964
1.00834 1.73033 1.26775 0.90328 1.20464 1.44487 1.10264 1.06219
1.49788 0.70545 0.98616 0.92789 0.95059 0.93986 0.94126 0.92600
0.90061 0.89438 0.89813 0.90766 0.91833 0.90799 0.82042 0.92505
0.91962 0.92096 0.92549 0.92506 0.92062 0.91982 0.91927 0.92415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 4.35 9.00 59.85 0.54 4.89 16
2 N -0.60 -15.24 2.91 -181.12 -0.53 -15.76 16
3 C -0.24 -6.39 8.75 -15.06 -0.13 -6.52 16
4 H 0.07 1.84 6.97 -52.48 -0.37 1.48 16
5 C -0.01 -0.17 5.43 -17.43 -0.09 -0.27 16
6 N -0.92 -26.49 9.49 55.49 0.53 -25.97 16
7 Si 0.91 21.55 29.56 -169.99 -5.02 16.52 16
8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
11 C 0.15 3.14 5.20 -4.04 -0.02 3.12 16
12 C 0.12 2.08 3.12 -66.96 -0.21 1.87 16
13 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16
14 C -0.11 -1.68 5.50 -24.90 -0.14 -1.82 16
15 C -0.13 -1.47 7.07 -24.71 -0.17 -1.65 16
16 C 0.08 0.90 5.49 -2.65 -0.01 0.88 16
17 N -0.61 -9.15 3.07 -164.51 -0.50 -9.65 16
18 C 0.60 9.81 7.63 -12.63 -0.10 9.71 16
19 O -0.51 -10.30 15.80 5.26 0.08 -10.22 16
20 C -0.02 -0.34 6.93 -82.06 -0.57 -0.91 16
21 C -0.15 -1.96 10.14 -38.99 -0.40 -2.36 16
22 C 0.04 0.44 5.65 -82.47 -0.47 -0.03 16
23 C 0.02 0.15 0.96 -155.66 -0.15 0.00 16
24 C -0.14 -1.09 8.46 37.16 0.31 -0.78 16
25 C -0.13 -1.07 8.04 37.16 0.30 -0.78 16
26 C -0.14 -1.07 8.20 37.16 0.30 -0.76 16
27 N -0.27 -3.27 11.48 33.64 0.39 -2.88 16
28 N -0.39 -4.41 6.28 33.48 0.21 -4.20 16
29 H 0.44 3.98 5.26 -190.46 -1.00 2.97 16
30 H 0.00 -0.12 7.75 -51.92 -0.40 -0.52 16
31 H 0.05 1.51 6.71 -51.93 -0.35 1.16 16
32 H 0.03 0.87 7.37 -51.93 -0.38 0.49 16
33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
34 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16
35 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16
36 H 0.08 1.35 6.71 -51.93 -0.35 1.00 16
37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
40 H 0.06 0.55 5.55 -51.93 -0.29 0.26 16
41 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16
42 H 0.16 1.95 7.79 -52.49 -0.41 1.55 16
43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
48 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16
49 H 0.06 0.48 7.59 -51.93 -0.39 0.08 16
50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
51 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
LS Contribution 395.45 15.07 5.96 5.96
Total: -1.00 -31.76 395.45 -9.20 -40.96
By element:
Atomic # 1 Polarization: 9.93 SS G_CDS: -9.31 Total: 0.63 kcal
Atomic # 6 Polarization: 5.61 SS G_CDS: -1.00 Total: 4.61 kcal
Atomic # 7 Polarization: -58.55 SS G_CDS: 0.09 Total: -58.46 kcal
Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -31.76 -9.20 -40.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001281940545.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.373 kcal
(2) G-P(sol) polarization free energy of solvation -31.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds