Wall clock time and date at job start Tue Mar 31 2020 20:24:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36933 * 119.99814 * 2 1
4 4 H 1.08006 * 119.99647 * 183.21328 * 3 2 1
5 5 C 1.38806 * 120.00087 * 3.20917 * 3 2 1
6 6 N 1.31622 * 120.00168 * 5.44748 * 5 3 2
7 7 Si 1.86807 * 120.00235 * 185.45124 * 5 3 2
8 8 H 1.48501 * 109.46944 * 89.99872 * 7 5 3
9 9 H 1.48492 * 109.47234 * 209.99872 * 7 5 3
10 10 H 1.48497 * 109.46639 * 329.99995 * 7 5 3
11 11 C 1.46503 * 120.00025 * 179.97438 * 2 1 3
12 12 C 1.52999 * 109.47078 * 267.26792 * 11 2 1
13 13 H 1.09000 * 109.99647 * 51.94435 * 12 11 2
14 14 C 1.54318 * 109.88797 * 290.84408 * 12 11 2
15 15 C 1.55150 * 102.94505 * 218.39099 * 14 12 11
16 16 C 1.54688 * 101.67921 * 35.33097 * 15 14 12
17 17 N 1.47022 * 109.88241 * 173.03340 * 12 11 2
18 18 C 1.34779 * 125.64621 * 298.32578 * 17 12 11
19 19 O 1.21623 * 120.00570 * 2.27781 * 18 17 12
20 20 C 1.47169 * 119.99853 * 182.27971 * 18 17 12
21 21 C 1.38396 * 126.88395 * 172.14875 * 20 18 17
22 22 C 1.39678 * 105.36208 * 180.02562 * 21 20 18
23 23 C 1.50691 * 126.07250 * 179.97438 * 22 21 20
24 24 C 1.53004 * 109.47084 * 75.00004 * 23 22 21
25 25 C 1.53006 * 109.47140 * 195.00176 * 23 22 21
26 26 C 1.53002 * 109.47368 * 315.00016 * 23 22 21
27 27 N 1.30866 * 107.85538 * 0.02562 * 22 21 20
28 28 N 1.28442 * 110.93221 * 359.97438 * 27 22 21
29 29 H 0.96998 * 125.19358 * 179.97438 * 28 27 22
30 30 H 1.09010 * 109.46853 * 179.11948 * 1 2 3
31 31 H 1.09005 * 109.47104 * 299.11479 * 1 2 3
32 32 H 1.08990 * 109.47384 * 59.12291 * 1 2 3
33 33 H 0.96996 * 120.00052 * 179.97438 * 6 5 3
34 34 H 1.09004 * 109.46986 * 147.27150 * 11 2 1
35 35 H 1.08998 * 109.47391 * 27.27273 * 11 2 1
36 36 H 1.09001 * 110.71771 * 336.75669 * 14 12 11
37 37 H 1.09003 * 110.72301 * 99.84468 * 14 12 11
38 38 H 1.09004 * 111.00802 * 153.57357 * 15 14 12
39 39 H 1.09000 * 111.00440 * 277.38823 * 15 14 12
40 40 H 1.08997 * 110.39662 * 204.36669 * 16 15 14
41 41 H 1.09004 * 110.23248 * 82.11131 * 16 15 14
42 42 H 1.07999 * 127.32171 * 359.77504 * 21 20 18
43 43 H 1.09001 * 109.47019 * 60.00307 * 24 23 22
44 44 H 1.09001 * 109.46763 * 179.97438 * 24 23 22
45 45 H 1.08994 * 109.47250 * 300.00103 * 24 23 22
46 46 H 1.08996 * 109.47365 * 59.99905 * 25 23 22
47 47 H 1.09005 * 109.46748 * 180.02562 * 25 23 22
48 48 H 1.09004 * 109.46568 * 299.99699 * 25 23 22
49 49 H 1.09004 * 109.46940 * 59.99889 * 26 23 22
50 50 H 1.08996 * 109.47244 * 179.97438 * 26 23 22
51 51 H 1.08996 * 109.46931 * 299.99968 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1859 0.0000
4 1 3.2284 1.1866 -0.0524
5 6 1.4572 2.3870 0.0673
6 7 0.1522 2.3857 0.2390
7 14 2.3774 4.0055 -0.0859
8 1 2.4385 4.4068 -1.5144
9 1 1.6693 5.0531 0.6926
10 1 3.7557 3.8431 0.4421
11 6 2.1975 -1.2688 0.0006
12 6 2.5121 -1.6754 1.4416
13 1 1.6020 -1.6566 2.0413
14 6 3.5568 -0.7118 2.0428
15 6 4.4516 -1.6543 2.8904
16 6 4.4569 -2.9393 2.0292
17 7 3.0979 -3.0237 1.4642
18 6 2.4907 -4.1510 1.0433
19 8 1.3762 -4.0973 0.5594
20 6 3.1765 -5.4471 1.1693
21 6 2.6376 -6.6988 0.9282
22 6 3.6715 -7.6023 1.1846
23 6 3.5886 -9.1023 1.0665
24 6 3.6061 -9.4993 -0.4111
25 6 4.7845 -9.7369 1.7793
26 6 2.2910 -9.5938 1.7112
27 7 4.7246 -6.9149 1.5467
28 7 4.4721 -5.6556 1.5487
29 1 5.1046 -4.9590 1.7842
30 1 -0.3633 -1.0277 -0.0158
31 1 -0.3633 0.5000 0.8979
32 1 -0.3633 0.5273 -0.8819
33 1 -0.3316 3.2251 0.2864
34 1 3.1279 -1.1514 -0.5551
35 1 1.5882 -2.0404 -0.4700
36 1 4.1384 -0.2333 1.2549
37 1 3.0745 0.0359 2.6724
38 1 5.4577 -1.2480 2.9953
39 1 4.0052 -1.8434 3.8666
40 1 4.6647 -3.8112 2.6493
41 1 5.1948 -2.8554 1.2314
42 1 1.6305 -6.9285 0.6131
43 1 4.5305 -9.1492 -0.8704
44 1 3.5466 -10.5843 -0.4965
45 1 2.7542 -9.0472 -0.9189
46 1 4.7721 -9.4541 2.8318
47 1 4.7247 -10.8219 1.6934
48 1 5.7089 -9.3868 1.3198
49 1 1.4390 -9.1417 1.2034
50 1 2.2309 -10.6787 1.6254
51 1 2.2786 -9.3110 2.7638
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001281940545.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:24:22
Heat of formation + Delta-G solvation = 53.596863 kcal
Electronic energy + Delta-G solvation = -29798.389575 eV
Core-core repulsion = 25927.811732 eV
Total energy + Delta-G solvation = -3870.577843 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-43.73688 -41.15966 -38.77613 -37.86805 -37.23701 -33.70581 -32.96872 -32.14842
-31.65068 -30.42469 -28.13154 -28.04953 -28.00486 -26.98130 -25.45799 -23.78332
-23.15560 -22.81975 -21.88058 -21.08684 -19.74733 -18.89551 -18.64123 -17.74913
-17.10744 -16.81632 -16.72797 -16.25949 -15.67601 -15.52917 -15.32528 -15.10142
-14.89320 -14.75091 -14.56992 -14.52416 -14.33395 -13.98888 -13.78678 -13.43593
-13.07403 -12.93966 -12.86619 -12.82052 -12.69016 -12.48221 -12.37895 -12.33159
-12.22445 -12.04231 -11.97083 -11.89843 -11.86269 -11.58037 -11.53889 -11.45526
-11.14382 -10.67814 -10.30289 -10.15852 -9.87514 -8.92900 -7.70394 -5.18378
0.12849 1.48060 1.48547 1.49918 1.57388 1.58716 1.88469 2.05756
2.52969 3.17366 3.37331 3.42084 3.47957 3.73554 3.76595 3.82119
3.97108 4.14917 4.15111 4.22452 4.26432 4.34992 4.40302 4.45045
4.48864 4.67022 4.76348 4.82863 4.85488 4.86487 4.89420 4.97749
5.02344 5.05080 5.06706 5.09860 5.10676 5.17171 5.28009 5.34601
5.39451 5.47519 5.48775 5.49478 5.52040 5.62887 5.80376 5.93565
6.28597 6.33126 6.83346 6.97180 7.16467 7.86630 8.29967 9.27616
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.025462 B = 0.002530 C = 0.002392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1099.412008 B =11062.498884 C =11704.747191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.187 3.813
2 N -0.619 5.619
3 C -0.239 4.239
4 H 0.089 0.911
5 C -0.068 4.068
6 N -0.952 5.952
7 Si 0.973 3.027
8 H -0.293 1.293
9 H -0.300 1.300
10 H -0.260 1.260
11 C 0.152 3.848
12 C 0.126 3.874
13 H 0.042 0.958
14 C -0.105 4.105
15 C -0.118 4.118
16 C 0.079 3.921
17 N -0.607 5.607
18 C 0.596 3.404
19 O -0.562 6.562
20 C -0.038 4.038
21 C -0.158 4.158
22 C 0.038 3.962
23 C 0.014 3.986
24 C -0.136 4.136
25 C -0.130 4.130
26 C -0.138 4.138
27 N -0.272 5.272
28 N -0.371 5.371
29 H 0.453 0.547
30 H 0.004 0.996
31 H 0.031 0.969
32 H 0.005 0.995
33 H 0.242 0.758
34 H 0.049 0.951
35 H 0.036 0.964
36 H 0.076 0.924
37 H 0.066 0.934
38 H 0.119 0.881
39 H 0.080 0.920
40 H 0.091 0.909
41 H 0.099 0.901
42 H 0.162 0.838
43 H 0.049 0.951
44 H 0.083 0.917
45 H 0.054 0.946
46 H 0.049 0.951
47 H 0.076 0.924
48 H 0.053 0.947
49 H 0.057 0.943
50 H 0.082 0.918
51 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.781 -22.975 6.092 27.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.343 5.343
3 C -0.368 4.368
4 H 0.107 0.893
5 C -0.260 4.260
6 N -0.601 5.601
7 Si 0.802 3.198
8 H -0.220 1.220
9 H -0.227 1.227
10 H -0.184 1.184
11 C 0.025 3.975
12 C 0.020 3.980
13 H 0.060 0.940
14 C -0.143 4.143
15 C -0.156 4.156
16 C -0.043 4.043
17 N -0.340 5.340
18 C 0.384 3.616
19 O -0.439 6.439
20 C -0.166 4.166
21 C -0.188 4.188
22 C -0.120 4.120
23 C 0.012 3.988
24 C -0.194 4.194
25 C -0.188 4.188
26 C -0.196 4.196
27 N -0.105 5.105
28 N -0.095 5.095
29 H 0.307 0.693
30 H 0.023 0.977
31 H 0.050 0.950
32 H 0.024 0.976
33 H 0.052 0.948
34 H 0.067 0.933
35 H 0.055 0.945
36 H 0.094 0.906
37 H 0.085 0.915
38 H 0.137 0.863
39 H 0.099 0.901
40 H 0.109 0.891
41 H 0.117 0.883
42 H 0.179 0.821
43 H 0.068 0.932
44 H 0.101 0.899
45 H 0.073 0.927
46 H 0.068 0.932
47 H 0.095 0.905
48 H 0.073 0.927
49 H 0.076 0.924
50 H 0.101 0.899
51 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 14.170 -22.933 6.143 27.649
hybrid contribution -0.962 1.954 -0.362 2.208
sum 13.208 -20.979 5.781 25.456
Atomic orbital electron populations
1.20705 0.82502 0.93037 0.99510 1.44198 1.02212 1.01550 1.86343
1.19662 0.91526 0.83805 1.41791 0.89322 1.25697 0.96619 1.01173
1.02499 1.70429 1.07335 1.24682 1.57696 0.85152 0.78240 0.79424
0.76978 1.22020 1.22655 1.18437 1.21074 0.95583 0.86772 0.94094
1.22325 0.96401 0.80280 0.98946 0.94012 1.22452 0.95943 0.96406
0.99517 1.22778 1.02171 0.92845 0.97800 1.22862 0.83086 1.00228
0.98164 1.48654 1.17497 1.06459 1.61389 1.16962 0.84698 0.81853
0.78109 1.90838 1.20606 1.86138 1.46315 1.21448 0.88061 0.95067
1.12053 1.22147 1.01717 0.89540 1.05361 1.22308 0.89087 0.97582
1.02974 1.19070 0.97818 0.84460 0.97412 1.21868 1.01785 1.02551
0.93201 1.21737 0.96397 1.00891 0.99728 1.21886 0.95244 1.02243
1.00221 1.73052 1.26790 0.90377 1.20258 1.44460 1.09490 1.06446
1.49114 0.69250 0.97720 0.95042 0.97647 0.94776 0.93274 0.94520
0.90585 0.91492 0.86289 0.90144 0.89112 0.88321 0.82052 0.93210
0.89858 0.92713 0.93153 0.90489 0.92749 0.92412 0.89894 0.92998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.19 10.28 9.00 127.77 1.15 11.43 16
2 N -0.62 -32.09 2.91 -726.93 -2.12 -34.21 16
3 C -0.24 -12.66 8.75 84.03 0.74 -11.93 16
4 H 0.09 4.36 6.97 -2.91 -0.02 4.34 16
5 C -0.07 -3.75 5.43 84.86 0.46 -3.29 16
6 N -0.95 -56.97 9.49 21.65 0.21 -56.77 16
7 Si 0.97 44.52 29.56 68.60 2.03 46.54 16
8 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16
9 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16
10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16
11 C 0.15 6.60 5.20 86.38 0.45 7.05 16
12 C 0.13 4.57 3.12 45.34 0.14 4.71 16
13 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
14 C -0.10 -3.16 5.50 31.78 0.17 -2.99 16
15 C -0.12 -2.19 7.07 31.91 0.23 -1.96 16
16 C 0.08 1.42 5.49 86.78 0.48 1.89 16
17 N -0.61 -17.72 3.07 -792.64 -2.43 -20.15 16
18 C 0.60 19.59 7.63 86.59 0.66 20.25 16
19 O -0.56 -23.50 15.80 -4.10 -0.06 -23.57 16
20 C -0.04 -1.00 6.93 40.79 0.28 -0.72 16
21 C -0.16 -3.97 10.14 22.66 0.23 -3.74 16
22 C 0.04 0.82 5.65 43.05 0.24 1.06 16
23 C 0.01 0.22 0.96 -52.93 -0.05 0.17 16
24 C -0.14 -1.88 8.46 71.98 0.61 -1.27 16
25 C -0.13 -1.76 8.04 71.98 0.58 -1.18 16
26 C -0.14 -1.85 8.20 71.98 0.59 -1.26 16
27 N -0.27 -5.88 11.48 -47.50 -0.55 -6.43 16
28 N -0.37 -7.62 6.28 -47.99 -0.30 -7.92 16
29 H 0.45 6.61 5.26 -220.01 -1.16 5.45 16
30 H 0.00 0.22 7.75 -2.38 -0.02 0.20 16
31 H 0.03 1.85 6.71 -2.38 -0.02 1.83 16
32 H 0.00 0.30 7.37 -2.39 -0.02 0.28 16
33 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16
34 H 0.05 2.03 7.89 -2.38 -0.02 2.01 16
35 H 0.04 1.72 6.31 -2.39 -0.02 1.71 16
36 H 0.08 2.38 6.71 -2.39 -0.02 2.36 16
37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
38 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16
39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
40 H 0.09 1.20 5.55 -2.39 -0.01 1.18 16
41 H 0.10 1.39 8.13 -2.38 -0.02 1.37 16
42 H 0.16 3.95 7.79 -2.91 -0.02 3.93 16
43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16
45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
47 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16
48 H 0.05 0.81 8.09 -2.38 -0.02 0.79 16
49 H 0.06 0.82 7.59 -2.39 -0.02 0.80 16
50 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
51 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -72.10 395.45 3.50 -68.61
By element:
Atomic # 1 Polarization: 15.87 SS G_CDS: -0.24 Total: 15.64 kcal
Atomic # 6 Polarization: 11.29 SS G_CDS: 6.96 Total: 18.25 kcal
Atomic # 7 Polarization: -120.28 SS G_CDS: -5.19 Total: -125.47 kcal
Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.57 kcal
Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal
Total: -72.10 3.50 -68.61 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001281940545.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.202 kcal
(2) G-P(sol) polarization free energy of solvation -72.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds