Wall clock time and date at job start Tue Mar 31 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46639 * 2 1 4 4 C 1.50696 * 109.47562 * 120.00235 * 2 1 3 5 5 N 1.30499 * 125.65123 * 300.17618 * 4 2 1 6 6 C 1.34127 * 109.25921 * 180.28830 * 5 4 2 7 7 C 1.34669 * 108.01600 * 359.73283 * 6 5 4 8 8 N 1.35042 * 125.65384 * 120.00201 * 4 2 1 9 9 C 1.46505 * 126.39296 * 359.97438 * 8 4 2 10 10 C 1.50703 * 109.47064 * 84.71650 * 9 8 4 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47194 * 179.97438 * 13 12 10 15 15 H 1.09006 * 110.01631 * 305.05919 * 14 13 12 16 16 C 1.53877 * 110.03445 * 66.45200 * 14 13 12 17 17 C 1.54265 * 106.59675 * 119.28701 * 16 14 13 18 18 C 1.54884 * 104.19841 * 23.60990 * 17 16 14 19 19 H 1.08994 * 110.75567 * 80.56067 * 18 17 16 20 20 N 1.46503 * 110.75608 * 203.74352 * 18 17 16 21 21 C 1.36934 * 120.00131 * 273.55064 * 20 18 17 22 22 H 1.08005 * 119.99973 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00061 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99994 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00237 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47165 * 90.00276 * 25 23 21 27 27 H 1.48500 * 109.47482 * 210.00421 * 25 23 21 28 28 H 1.48497 * 109.46967 * 330.00486 * 25 23 21 29 29 C 1.54273 * 110.03223 * 183.61882 * 14 13 12 30 30 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47262 * 299.99158 * 1 2 3 32 32 H 1.08996 * 109.47455 * 60.00151 * 1 2 3 33 33 H 1.08995 * 109.47262 * 240.00842 * 2 1 3 34 34 H 1.09001 * 109.46860 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47074 * 300.00082 * 3 2 1 36 36 H 1.09000 * 109.46804 * 60.00877 * 3 2 1 37 37 H 1.08001 * 125.99003 * 179.71998 * 6 5 4 38 38 H 1.08005 * 126.58968 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47068 * 204.71619 * 9 8 4 40 40 H 1.09001 * 109.47372 * 324.71707 * 9 8 4 41 41 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 42 42 H 1.09002 * 109.47021 * 299.99722 * 13 12 10 43 43 H 1.09001 * 109.47001 * 59.99554 * 13 12 10 44 44 H 1.09001 * 110.03059 * 238.56762 * 16 14 13 45 45 H 1.08996 * 110.03141 * 359.95077 * 16 14 13 46 46 H 1.09001 * 110.48457 * 142.29187 * 17 16 14 47 47 H 1.09008 * 110.48067 * 264.92866 * 17 16 14 48 48 H 0.97003 * 119.99833 * 93.54140 * 20 18 17 49 49 H 0.97006 * 120.00057 * 179.97438 * 24 23 21 50 50 H 1.08991 * 110.48336 * 335.78227 * 29 14 13 51 51 H 1.08997 * 110.48137 * 98.42624 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7834 -0.3640 2.4637 6 6 2.3970 -1.2185 3.2957 7 6 3.0462 -2.1326 2.5496 8 7 2.8121 -1.8130 1.2394 9 6 3.3181 -2.5294 0.0660 10 6 4.5862 -1.8726 -0.4153 11 8 5.0239 -0.9014 0.1644 12 7 5.2334 -2.3639 -1.4906 13 6 6.4664 -1.7258 -1.9582 14 6 6.9948 -2.4739 -3.1837 15 1 7.1193 -3.5314 -2.9503 16 6 6.0220 -2.3057 -4.3640 17 6 6.8109 -1.6041 -5.4888 18 6 8.2915 -1.9373 -5.1791 19 1 8.5446 -2.9368 -5.5326 20 7 9.1836 -0.9378 -5.7719 21 6 9.6049 -1.0784 -7.0672 22 1 9.2798 -1.9265 -7.6517 23 6 10.4505 -0.1316 -7.6287 24 7 10.8559 -0.2671 -8.8736 25 14 11.0133 1.3348 -6.6176 26 1 12.2727 0.9932 -5.9087 27 1 11.2493 2.4939 -7.5153 28 1 9.9653 1.6829 -5.6248 29 6 8.3410 -1.8687 -3.6325 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 2.3746 -1.1801 4.3748 38 1 3.6380 -2.9589 2.9148 39 1 3.5247 -3.5656 0.3341 40 1 2.5708 -2.5014 -0.7270 41 1 4.8831 -3.1405 -1.9545 42 1 6.2603 -0.6894 -2.2257 43 1 7.2137 -1.7546 -1.1652 44 1 5.6750 -3.2815 -4.7039 45 1 5.1730 -1.6917 -4.0635 46 1 6.5253 -2.0040 -6.4617 47 1 6.6471 -0.5270 -5.4550 48 1 9.4757 -0.1762 -5.2468 49 1 11.4466 0.3947 -9.2661 50 1 8.4243 -0.8344 -3.2990 51 1 9.1720 -2.4618 -3.2508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316663136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:15 Heat of formation + Delta-G solvation = 22.101543 kcal Electronic energy + Delta-G solvation = -28681.415223 eV Core-core repulsion = 24809.471640 eV Total energy + Delta-G solvation = -3871.943583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.47777 -40.05408 -38.36072 -35.63486 -35.25336 -34.32983 -33.53257 -31.18318 -29.71483 -29.07837 -28.28384 -27.40407 -27.30382 -24.43678 -23.12986 -22.78374 -21.72356 -21.15016 -20.11609 -19.63746 -19.28398 -17.85924 -17.67292 -17.53612 -16.31236 -16.09148 -15.50151 -15.24837 -15.05106 -14.86073 -14.55659 -14.23983 -13.92214 -13.87195 -13.69841 -13.43084 -13.17811 -13.14156 -12.80908 -12.69533 -12.48566 -12.38896 -12.29125 -11.78560 -11.46332 -11.39817 -11.25744 -11.11198 -10.90536 -10.78279 -10.67217 -10.62193 -10.47398 -10.31227 -10.16728 -9.98291 -9.72876 -9.61886 -9.42768 -8.94353 -8.57011 -7.29873 -5.80706 -3.16447 1.67425 2.10464 2.26649 2.86799 2.97527 3.35300 3.38400 3.43493 4.04622 4.11916 4.17272 4.33024 4.43847 4.55905 4.59102 4.72330 4.73022 4.81135 4.83947 4.95031 5.22170 5.30507 5.37970 5.39288 5.39884 5.47943 5.54309 5.54610 5.61488 5.61915 5.68357 5.70099 5.81318 5.85960 5.90868 5.96679 6.03215 6.08573 6.12667 6.13292 6.19026 6.33956 6.51875 6.52894 6.72141 6.82724 6.92751 7.05555 7.73865 7.89611 7.95585 8.38780 9.17049 9.89829 10.09237 11.37507 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.002069 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.238087 B =13530.814268 C =13856.042436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.229 3.771 5 N -0.486 5.486 6 C -0.026 4.026 7 C -0.054 4.054 8 N -0.443 5.443 9 C 0.083 3.917 10 C 0.491 3.509 11 O -0.517 6.517 12 N -0.722 5.722 13 C 0.127 3.873 14 C -0.100 4.100 15 H 0.076 0.924 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.182 3.818 19 H 0.062 0.938 20 N -0.745 5.745 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.933 5.933 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C -0.125 4.125 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.402 0.598 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.067 0.933 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.572 -7.948 20.560 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.033 4.033 5 N -0.204 5.204 6 C -0.173 4.173 7 C -0.185 4.185 8 N -0.126 5.126 9 C -0.044 4.044 10 C 0.274 3.726 11 O -0.392 6.392 12 N -0.374 5.374 13 C 0.004 3.996 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.159 4.159 17 C -0.184 4.184 18 C 0.072 3.928 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.581 5.581 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.164 4.164 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.186 0.814 38 H 0.189 0.811 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.194 0.806 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.594 -6.721 20.889 30.094 hybrid contribution 1.006 -0.153 0.156 1.029 sum -19.588 -6.874 21.044 29.560 Atomic orbital electron populations 1.21793 0.93007 1.02025 1.02931 1.19539 0.96477 0.96203 0.90565 1.21766 1.01724 0.93762 1.02537 1.23189 0.96287 0.88112 0.95712 1.70183 1.24473 1.26814 0.98929 1.22235 1.01145 0.94419 0.99544 1.22613 1.08130 1.05259 0.82542 1.44841 1.38541 1.23390 1.05781 1.21680 0.95979 0.97565 0.89201 1.20693 0.85775 0.85013 0.81076 1.90813 1.66736 1.25846 1.55780 1.45993 1.27195 1.33752 1.30484 1.21605 0.84693 0.97162 0.96124 1.21964 0.96549 0.99646 0.93799 0.90521 1.22222 0.97558 1.00513 0.95602 1.23037 0.98024 1.00235 0.97098 1.21127 0.88777 0.93427 0.89435 0.92014 1.42746 1.56791 1.26217 1.12942 1.19065 1.23019 1.08051 0.87288 0.89220 1.24685 0.99817 0.98624 0.96049 1.69703 1.38649 1.36972 1.12782 0.86558 0.78770 0.83559 0.79683 1.21068 1.21731 1.20306 1.22612 0.94976 1.00925 0.97927 0.92864 0.91239 0.91730 0.90673 0.92186 0.91887 0.91421 0.81371 0.81081 0.85901 0.86112 0.76359 0.91005 0.91413 0.92132 0.92328 0.92034 0.91901 0.80573 0.93042 0.91425 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.17 37.15 0.34 -0.68 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.36 9.18 37.16 0.34 -1.02 16 4 C 0.23 2.53 6.39 -155.42 -0.99 1.54 16 5 N -0.49 -6.15 11.25 -10.82 -0.12 -6.27 16 6 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 7 C -0.05 -0.50 11.58 -16.57 -0.19 -0.69 16 8 N -0.44 -4.15 2.24 -115.18 -0.26 -4.41 16 9 C 0.08 0.49 6.16 -5.19 -0.03 0.46 16 10 C 0.49 4.51 7.90 -10.98 -0.09 4.42 16 11 O -0.52 -7.41 16.41 5.56 0.09 -7.32 16 12 N -0.72 -5.36 5.29 -60.30 -0.32 -5.68 16 13 C 0.13 1.27 4.70 -4.05 -0.02 1.25 16 14 C -0.10 -1.02 2.98 -89.50 -0.27 -1.29 16 15 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.12 -1.31 6.13 -25.61 -0.16 -1.46 16 17 C -0.14 -2.24 6.51 -25.08 -0.16 -2.40 16 18 C 0.18 3.22 3.54 -65.94 -0.23 2.99 16 19 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 20 N -0.75 -17.01 5.06 -51.50 -0.26 -17.27 16 21 C -0.24 -6.73 10.46 -15.06 -0.16 -6.89 16 22 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 25 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 29 C -0.13 -1.72 5.96 -25.07 -0.15 -1.87 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 6.85 -51.93 -0.36 0.21 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.12 0.41 7.30 -51.93 -0.38 0.04 16 41 H 0.40 1.75 8.31 -40.82 -0.34 1.41 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.59 7.58 -51.93 -0.39 0.19 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 48 H 0.36 8.18 5.58 -40.82 -0.23 7.95 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 50 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -36.32 411.92 -9.85 -46.16 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.87 Total: 6.05 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.37 Total: -6.48 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.18 Total: -61.85 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.32 -9.85 -46.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316663136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.266 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds