Wall clock time and date at job start Tue Mar 31 2020 20:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46639 * 2 1 4 4 C 1.50696 * 109.47562 * 120.00235 * 2 1 3 5 5 N 1.30499 * 125.65123 * 300.17618 * 4 2 1 6 6 C 1.34127 * 109.25921 * 180.28830 * 5 4 2 7 7 C 1.34669 * 108.01600 * 359.73283 * 6 5 4 8 8 N 1.35042 * 125.65384 * 120.00201 * 4 2 1 9 9 C 1.46505 * 126.39296 * 359.97438 * 8 4 2 10 10 C 1.50703 * 109.47064 * 84.71650 * 9 8 4 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47194 * 179.97438 * 13 12 10 15 15 H 1.09006 * 110.01631 * 305.05919 * 14 13 12 16 16 C 1.53877 * 110.03445 * 66.45200 * 14 13 12 17 17 C 1.54265 * 106.59675 * 119.28701 * 16 14 13 18 18 C 1.54884 * 104.19841 * 23.60990 * 17 16 14 19 19 H 1.08994 * 110.75567 * 80.56067 * 18 17 16 20 20 N 1.46503 * 110.75608 * 203.74352 * 18 17 16 21 21 C 1.36934 * 120.00131 * 273.55064 * 20 18 17 22 22 H 1.08005 * 119.99973 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00061 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99994 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00237 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47165 * 90.00276 * 25 23 21 27 27 H 1.48500 * 109.47482 * 210.00421 * 25 23 21 28 28 H 1.48497 * 109.46967 * 330.00486 * 25 23 21 29 29 C 1.54273 * 110.03223 * 183.61882 * 14 13 12 30 30 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47262 * 299.99158 * 1 2 3 32 32 H 1.08996 * 109.47455 * 60.00151 * 1 2 3 33 33 H 1.08995 * 109.47262 * 240.00842 * 2 1 3 34 34 H 1.09001 * 109.46860 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47074 * 300.00082 * 3 2 1 36 36 H 1.09000 * 109.46804 * 60.00877 * 3 2 1 37 37 H 1.08001 * 125.99003 * 179.71998 * 6 5 4 38 38 H 1.08005 * 126.58968 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47068 * 204.71619 * 9 8 4 40 40 H 1.09001 * 109.47372 * 324.71707 * 9 8 4 41 41 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 42 42 H 1.09002 * 109.47021 * 299.99722 * 13 12 10 43 43 H 1.09001 * 109.47001 * 59.99554 * 13 12 10 44 44 H 1.09001 * 110.03059 * 238.56762 * 16 14 13 45 45 H 1.08996 * 110.03141 * 359.95077 * 16 14 13 46 46 H 1.09001 * 110.48457 * 142.29187 * 17 16 14 47 47 H 1.09008 * 110.48067 * 264.92866 * 17 16 14 48 48 H 0.97003 * 119.99833 * 93.54140 * 20 18 17 49 49 H 0.97006 * 120.00057 * 179.97438 * 24 23 21 50 50 H 1.08991 * 110.48336 * 335.78227 * 29 14 13 51 51 H 1.08997 * 110.48137 * 98.42624 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7834 -0.3640 2.4637 6 6 2.3970 -1.2185 3.2957 7 6 3.0462 -2.1326 2.5496 8 7 2.8121 -1.8130 1.2394 9 6 3.3181 -2.5294 0.0660 10 6 4.5862 -1.8726 -0.4153 11 8 5.0239 -0.9014 0.1644 12 7 5.2334 -2.3639 -1.4906 13 6 6.4664 -1.7258 -1.9582 14 6 6.9948 -2.4739 -3.1837 15 1 7.1193 -3.5314 -2.9503 16 6 6.0220 -2.3057 -4.3640 17 6 6.8109 -1.6041 -5.4888 18 6 8.2915 -1.9373 -5.1791 19 1 8.5446 -2.9368 -5.5326 20 7 9.1836 -0.9378 -5.7719 21 6 9.6049 -1.0784 -7.0672 22 1 9.2798 -1.9265 -7.6517 23 6 10.4505 -0.1316 -7.6287 24 7 10.8559 -0.2671 -8.8736 25 14 11.0133 1.3348 -6.6176 26 1 12.2727 0.9932 -5.9087 27 1 11.2493 2.4939 -7.5153 28 1 9.9653 1.6829 -5.6248 29 6 8.3410 -1.8687 -3.6325 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 2.3746 -1.1801 4.3748 38 1 3.6380 -2.9589 2.9148 39 1 3.5247 -3.5656 0.3341 40 1 2.5708 -2.5014 -0.7270 41 1 4.8831 -3.1405 -1.9545 42 1 6.2603 -0.6894 -2.2257 43 1 7.2137 -1.7546 -1.1652 44 1 5.6750 -3.2815 -4.7039 45 1 5.1730 -1.6917 -4.0635 46 1 6.5253 -2.0040 -6.4617 47 1 6.6471 -0.5270 -5.4550 48 1 9.4757 -0.1762 -5.2468 49 1 11.4466 0.3947 -9.2661 50 1 8.4243 -0.8344 -3.2990 51 1 9.1720 -2.4618 -3.2508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316663136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:13 Heat of formation + Delta-G solvation = -2.391578 kcal Electronic energy + Delta-G solvation = -28682.477324 eV Core-core repulsion = 24809.471640 eV Total energy + Delta-G solvation = -3873.005684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.15293 -40.82789 -39.47435 -36.47519 -36.29238 -35.07497 -34.94696 -33.03593 -30.74495 -29.81202 -29.28574 -28.36299 -28.06843 -25.58111 -24.50818 -23.81455 -22.43809 -21.92107 -21.35022 -20.66813 -20.04990 -19.56428 -18.52243 -18.27444 -17.20906 -16.82208 -16.65942 -16.32716 -16.10569 -15.73240 -15.71155 -15.24524 -14.86511 -14.62140 -14.59877 -14.45612 -14.30891 -14.24635 -14.07325 -13.81979 -13.49723 -13.20219 -13.11181 -13.03659 -12.71146 -12.42116 -12.33398 -12.14779 -12.12263 -11.97308 -11.91740 -11.85463 -11.72246 -11.56727 -11.41545 -11.24048 -10.94784 -10.91424 -10.46102 -10.16131 -9.28308 -9.27063 -8.03135 -5.35355 0.99052 1.36540 1.38713 1.45999 1.46082 1.69676 2.20301 2.25605 2.47006 3.27698 3.40764 3.50070 3.63474 3.67920 3.72590 3.79852 3.81111 4.08815 4.12597 4.14546 4.18550 4.34107 4.37127 4.44405 4.59525 4.61197 4.63654 4.72760 4.73201 4.77118 4.78151 4.88310 4.89124 4.93720 5.04058 5.05998 5.11367 5.20972 5.25518 5.30382 5.32187 5.41100 5.43500 5.54860 5.56751 5.78240 5.86575 6.17562 6.22400 6.48926 7.08213 7.14777 7.18341 7.86812 8.03507 9.18414 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.002069 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.238087 B =13530.814268 C =13856.042436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C -0.135 4.135 4 C 0.213 3.787 5 N -0.525 5.525 6 C -0.059 4.059 7 C -0.048 4.048 8 N -0.445 5.445 9 C 0.082 3.918 10 C 0.492 3.508 11 O -0.575 6.575 12 N -0.704 5.704 13 C 0.135 3.865 14 C -0.083 4.083 15 H 0.107 0.893 16 C -0.107 4.107 17 C -0.142 4.142 18 C 0.166 3.834 19 H 0.053 0.947 20 N -0.752 5.752 21 C -0.225 4.225 22 H 0.058 0.942 23 C -0.067 4.067 24 N -0.984 5.984 25 Si 0.952 3.048 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.255 1.255 29 C -0.120 4.120 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.180 0.820 38 H 0.203 0.797 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.422 0.578 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.363 0.637 49 H 0.257 0.743 50 H 0.060 0.940 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.141 -9.800 22.116 32.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.193 4.193 4 C -0.050 4.050 5 N -0.244 5.244 6 C -0.205 4.205 7 C -0.180 4.180 8 N -0.127 5.127 9 C -0.043 4.043 10 C 0.277 3.723 11 O -0.454 6.454 12 N -0.358 5.358 13 C 0.011 3.989 14 C -0.102 4.102 15 H 0.125 0.875 16 C -0.145 4.145 17 C -0.182 4.182 18 C 0.058 3.942 19 H 0.072 0.928 20 N -0.394 5.394 21 C -0.356 4.356 22 H 0.076 0.924 23 C -0.258 4.258 24 N -0.635 5.635 25 Si 0.780 3.220 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.180 1.180 29 C -0.159 4.159 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.197 0.803 38 H 0.220 0.780 39 H 0.182 0.818 40 H 0.170 0.830 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.196 0.804 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.217 -8.644 22.468 32.759 hybrid contribution 1.478 0.331 -0.350 1.555 sum -20.739 -8.313 22.119 31.440 Atomic orbital electron populations 1.21733 0.91855 1.02564 1.02887 1.19643 0.97384 0.95265 0.90566 1.21703 0.99840 0.95007 1.02725 1.23518 0.96810 0.88903 0.95781 1.70114 1.25919 1.28148 1.00213 1.22639 1.02243 0.95170 1.00457 1.23119 1.07095 1.05282 0.82507 1.45039 1.37891 1.23070 1.06749 1.22041 0.94762 0.98526 0.88968 1.21259 0.86357 0.84131 0.80529 1.90809 1.68431 1.28525 1.57638 1.45766 1.26060 1.33901 1.30023 1.21325 0.85625 0.96258 0.95695 1.21832 0.94061 1.00971 0.93372 0.87531 1.22149 0.97265 1.01477 0.93629 1.22897 0.97235 0.99637 0.98465 1.21466 0.88939 0.91659 0.92144 0.92844 1.42811 1.57741 1.27525 1.11344 1.19044 1.21434 1.06302 0.88848 0.92368 1.25485 1.00954 1.02106 0.97278 1.69880 1.40327 1.38367 1.14936 0.85444 0.78826 0.79419 0.78280 1.20477 1.22480 1.17984 1.22529 0.97686 1.01181 0.94471 0.92009 0.92989 0.90016 0.88885 0.94871 0.90035 0.92867 0.80271 0.78040 0.81832 0.82980 0.74008 0.93131 0.92218 0.89485 0.90883 0.93645 0.93720 0.80359 0.93456 0.92150 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.17 71.98 0.66 -1.06 16 2 C -0.01 -0.14 3.25 -11.54 -0.04 -0.17 16 3 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 4 C 0.21 4.46 6.39 138.13 0.88 5.34 16 5 N -0.53 -13.35 11.25 -188.14 -2.12 -15.47 16 6 C -0.06 -1.23 11.87 83.52 0.99 -0.24 16 7 C -0.05 -0.79 11.58 83.09 0.96 0.18 16 8 N -0.45 -7.24 2.24 -518.33 -1.16 -8.40 16 9 C 0.08 0.61 6.16 85.63 0.53 1.14 16 10 C 0.49 7.45 7.90 87.66 0.69 8.14 16 11 O -0.58 -15.75 16.41 -3.02 -0.05 -15.80 16 12 N -0.70 -7.51 5.29 -463.07 -2.45 -9.96 16 13 C 0.14 2.30 4.70 86.38 0.41 2.70 16 14 C -0.08 -1.38 2.98 -10.07 -0.03 -1.41 16 15 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 16 C -0.11 -1.91 6.13 31.32 0.19 -1.72 16 17 C -0.14 -4.26 6.51 31.67 0.21 -4.06 16 18 C 0.17 5.70 3.54 46.28 0.16 5.87 16 19 H 0.05 1.92 8.12 -2.39 -0.02 1.91 16 20 N -0.75 -34.14 5.06 -316.86 -1.60 -35.74 16 21 C -0.23 -12.65 10.46 84.03 0.88 -11.77 16 22 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 24 N -0.98 -63.05 13.97 21.65 0.30 -62.74 16 25 Si 0.95 45.79 27.74 68.60 1.90 47.69 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 27 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 29 C -0.12 -3.02 5.96 31.67 0.19 -2.83 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.14 6.85 -2.39 -0.02 1.13 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.15 0.21 7.30 -2.39 -0.02 0.20 16 41 H 0.42 1.26 8.31 -92.70 -0.77 0.49 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.15 7.58 -2.39 -0.02 1.14 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.36 16.07 5.58 -92.71 -0.52 15.55 16 49 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 50 H 0.06 1.63 7.73 -2.39 -0.02 1.61 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -84.88 411.92 2.21 -82.67 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.43 Total: 23.06 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 7.81 Total: -5.31 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -7.03 Total: -132.31 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.05 Total: -15.80 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -84.88 2.21 -82.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316663136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.282 kcal (2) G-P(sol) polarization free energy of solvation -84.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds