Wall clock time and date at job start Tue Mar 31 2020 18:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46947 * 2 1 4 4 C 1.35358 * 126.38968 * 275.34140 * 3 2 1 5 5 C 1.41501 * 105.50304 * 180.10213 * 4 3 2 6 6 C 1.47717 * 126.51723 * 179.84254 * 5 4 3 7 7 O 1.21568 * 119.99901 * 354.18475 * 6 5 4 8 8 N 1.34778 * 119.99914 * 174.45438 * 6 5 4 9 9 C 1.46929 * 120.62883 * 5.88891 * 8 6 5 10 10 C 1.52763 * 109.00577 * 233.58300 * 9 8 6 11 11 C 1.53036 * 109.38517 * 305.58970 * 10 9 8 12 12 C 1.53042 * 109.54035 * 61.23850 * 11 10 9 13 13 H 1.09006 * 109.52014 * 58.59961 * 12 11 10 14 14 C 1.52994 * 109.50281 * 178.68211 * 12 11 10 15 15 C 1.46928 * 120.62932 * 186.16992 * 8 6 5 16 16 H 1.08996 * 109.58174 * 246.29868 * 15 8 6 17 17 C 1.53000 * 109.58553 * 6.57837 * 15 8 6 18 18 C 1.53007 * 109.46866 * 66.17075 * 17 15 8 19 19 N 1.46500 * 109.46905 * 175.85428 * 18 17 15 20 20 C 1.36934 * 120.00006 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99609 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00041 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99906 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00329 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47233 * 89.99759 * 24 22 20 26 26 H 1.48495 * 109.47531 * 210.00429 * 24 22 20 27 27 H 1.48506 * 109.46746 * 330.00036 * 24 22 20 28 28 N 1.31800 * 106.96333 * 359.58888 * 5 4 3 29 29 N 1.28469 * 110.07641 * 0.25852 * 28 5 4 30 30 H 0.96994 * 124.88322 * 179.97438 * 29 28 5 31 31 H 1.08995 * 109.47325 * 300.00195 * 1 2 3 32 32 H 1.09008 * 109.46781 * 59.99661 * 1 2 3 33 33 H 1.09000 * 109.47251 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47326 * 240.00540 * 2 1 3 35 35 H 1.08996 * 109.47110 * 120.00204 * 2 1 3 36 36 H 1.08001 * 127.25092 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.58613 * 353.41807 * 9 8 6 38 38 H 1.09003 * 109.58545 * 113.84491 * 9 8 6 39 39 H 1.09000 * 109.55850 * 185.55296 * 10 9 8 40 40 H 1.09005 * 109.38382 * 65.51861 * 10 9 8 41 41 H 1.09002 * 109.45972 * 301.22343 * 11 10 9 42 42 H 1.09002 * 109.44924 * 181.25562 * 11 10 9 43 43 H 1.08993 * 109.47556 * 179.84015 * 14 12 11 44 44 H 1.09006 * 109.46953 * 299.84531 * 14 12 11 45 45 H 1.09006 * 109.47013 * 59.83595 * 14 12 11 46 46 H 1.09002 * 109.46854 * 186.16148 * 17 15 8 47 47 H 1.08995 * 109.47406 * 306.17013 * 17 15 8 48 48 H 1.08994 * 109.46678 * 295.85193 * 18 17 15 49 49 H 1.09001 * 109.47085 * 55.85060 * 18 17 15 50 50 H 0.97004 * 120.00064 * 359.97438 * 19 18 17 51 51 H 0.97003 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2044 2.2118 -1.0849 5 6 2.6916 3.4418 -0.5828 6 6 3.0405 4.6384 -1.3755 7 8 3.0185 4.5905 -2.5901 8 7 3.3883 5.7817 -0.7523 9 6 3.5503 5.8191 0.7075 10 6 2.6838 6.9417 1.2756 11 6 3.0285 8.2556 0.5707 12 6 2.7344 8.1262 -0.9256 13 1 1.6827 7.8789 -1.0701 14 6 3.0483 9.4506 -1.6242 15 6 3.6069 7.0157 -1.5193 16 1 4.6569 7.3018 -1.4596 17 6 3.2202 6.7860 -2.9817 18 6 1.7127 6.5426 -3.0784 19 7 1.3270 6.4210 -4.4864 20 6 0.0180 6.1984 -4.8210 21 1 -0.7300 6.1120 -4.0468 22 6 -0.3475 6.0838 -6.1552 23 7 -1.6058 5.8703 -6.4768 24 14 0.9462 6.2339 -7.4943 25 1 1.5097 4.8924 -7.7909 26 1 0.3253 6.7925 -8.7221 27 1 2.0322 7.1363 -7.0344 28 7 2.7696 3.3186 0.7271 29 7 2.3883 2.1446 1.0831 30 1 2.3604 1.8241 1.9981 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.0124 1.9570 -2.1167 37 1 3.2374 4.8662 1.1344 38 1 4.5952 6.0071 0.9546 39 1 2.8715 7.0421 2.3446 40 1 1.6324 6.7056 1.1114 41 1 4.0856 8.4786 0.7150 42 1 2.4266 9.0615 0.9907 43 1 2.8414 9.3571 -2.6902 44 1 2.4272 10.2405 -1.2015 45 1 4.0998 9.6981 -1.4784 46 1 3.4847 7.6648 -3.5697 47 1 3.7539 5.9170 -3.3665 48 1 1.4587 5.6229 -2.5514 49 1 1.1799 7.3793 -2.6265 50 1 1.9990 6.4983 -5.1818 51 1 -1.8612 5.7898 -7.4092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316672929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:20 Heat of formation + Delta-G solvation = 84.613155 kcal Electronic energy + Delta-G solvation = -30738.821775 eV Core-core repulsion = 26869.588899 eV Total energy + Delta-G solvation = -3869.232876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.81093 -40.50419 -37.45829 -35.29373 -34.49928 -33.60033 -32.63930 -31.78701 -30.95421 -29.57038 -28.65710 -26.36181 -25.56339 -24.00193 -23.61923 -22.81837 -21.66599 -21.25838 -21.01825 -19.71002 -18.51159 -17.99403 -17.23052 -16.53148 -15.96128 -15.57525 -15.09369 -14.83472 -14.70537 -14.59839 -14.44747 -14.04131 -13.64648 -13.42742 -13.29647 -13.23361 -13.18990 -12.69525 -12.63018 -12.42687 -12.29447 -12.06126 -11.83021 -11.75072 -11.42475 -11.33763 -11.19450 -11.05517 -10.95976 -10.62663 -10.50513 -10.27361 -10.10306 -9.83602 -9.78370 -9.39219 -9.36707 -9.04341 -8.70629 -8.62857 -8.22223 -6.87721 -5.55857 -2.86188 1.56423 2.10062 2.65493 3.17468 3.54362 3.59213 3.60190 3.62446 4.28812 4.44779 4.62514 4.77542 4.80064 4.88134 4.95090 4.99031 5.06869 5.14056 5.26986 5.36358 5.39700 5.46374 5.52900 5.61362 5.64088 5.69689 5.72918 5.74343 5.76685 5.83833 5.85338 5.96165 5.97344 6.00631 6.12578 6.17279 6.19192 6.26340 6.38460 6.41238 6.43788 6.54077 6.65639 6.81335 6.98643 7.18564 7.30896 7.63122 7.84776 8.23437 8.53273 8.64960 9.46908 10.20974 10.43871 11.63715 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.004859 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.064206 B = 5761.121409 C = 8420.681003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.053 4.053 3 C 0.018 3.982 4 C -0.170 4.170 5 C 0.006 3.994 6 C 0.589 3.411 7 O -0.485 6.485 8 N -0.597 5.597 9 C 0.074 3.926 10 C -0.132 4.132 11 C -0.114 4.114 12 C -0.110 4.110 13 H 0.087 0.913 14 C -0.144 4.144 15 C 0.162 3.838 16 H 0.068 0.932 17 C -0.146 4.146 18 C 0.166 3.834 19 N -0.751 5.751 20 C -0.225 4.225 21 H 0.085 0.915 22 C -0.003 4.003 23 N -0.943 5.943 24 Si 0.885 3.115 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.278 1.278 28 N -0.269 5.269 29 N -0.388 5.388 30 H 0.440 0.560 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.164 0.836 37 H 0.138 0.862 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.110 0.890 48 H 0.037 0.963 49 H 0.011 0.989 50 H 0.358 0.642 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 -6.520 22.296 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.197 4.197 5 C -0.155 4.155 6 C 0.375 3.625 7 O -0.357 6.357 8 N -0.330 5.330 9 C -0.049 4.049 10 C -0.170 4.170 11 C -0.152 4.152 12 C -0.129 4.129 13 H 0.105 0.895 14 C -0.202 4.202 15 C 0.059 3.941 16 H 0.086 0.914 17 C -0.184 4.184 18 C 0.040 3.960 19 N -0.395 5.395 20 C -0.356 4.356 21 H 0.103 0.897 22 C -0.198 4.198 23 N -0.593 5.593 24 Si 0.717 3.283 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.204 1.204 28 N -0.104 5.104 29 N -0.101 5.101 30 H 0.284 0.716 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.182 0.818 37 H 0.155 0.845 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.128 0.872 48 H 0.055 0.945 49 H 0.029 0.971 50 H 0.190 0.810 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.308 -5.989 22.551 26.380 hybrid contribution 0.506 -0.297 -1.053 1.206 sum 12.814 -6.286 21.498 25.804 Atomic orbital electron populations 1.21801 0.93850 1.02277 1.03000 1.20122 0.96606 0.88670 1.03813 1.21423 1.05271 0.96820 0.87286 1.21587 1.05912 0.92111 1.00140 1.22208 1.06733 0.97029 0.89491 1.17030 0.77837 0.81188 0.86489 1.90908 1.50406 1.82283 1.12144 1.47822 1.68695 1.08866 1.07661 1.22577 0.99255 1.03350 0.79737 1.21807 1.00724 0.95203 0.99309 1.21607 1.01149 0.97201 0.95217 1.21672 1.01764 0.95100 0.94395 0.89452 1.21787 1.00858 0.95983 1.01553 1.21266 0.98041 0.82773 0.91999 0.91441 1.22538 0.99995 1.02831 0.92998 1.20929 0.90819 0.97522 0.86748 1.42626 1.06551 1.88436 1.01879 1.19070 0.84172 1.39503 0.92807 0.89724 1.24617 0.95786 1.02696 0.96656 1.69714 1.15118 1.57657 1.16778 0.86503 0.81645 0.77857 0.82341 1.21244 1.22124 1.20431 1.73021 1.20419 1.01951 1.14969 1.43461 1.48063 1.08868 1.09662 0.71641 0.92771 0.91414 0.91774 0.88969 0.90866 0.81803 0.84514 0.92436 0.91295 0.91641 0.92222 0.91984 0.91545 0.92662 0.93071 0.92727 0.87177 0.94543 0.97115 0.80964 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.36 6.49 -27.88 -0.18 -0.54 16 3 C 0.02 0.18 6.48 -82.21 -0.53 -0.35 16 4 C -0.17 -2.35 10.73 -39.37 -0.42 -2.77 16 5 C 0.01 0.09 6.91 -82.77 -0.57 -0.48 16 6 C 0.59 10.10 6.31 -12.39 -0.08 10.02 16 7 O -0.49 -9.99 10.81 5.31 0.06 -9.93 16 8 N -0.60 -8.74 2.94 -166.63 -0.49 -9.23 16 9 C 0.07 0.86 6.31 -3.93 -0.02 0.84 16 10 C -0.13 -1.40 6.06 -26.83 -0.16 -1.56 16 11 C -0.11 -1.23 5.17 -26.69 -0.14 -1.37 16 12 C -0.11 -1.48 1.98 -90.50 -0.18 -1.66 16 13 H 0.09 1.41 5.93 -51.93 -0.31 1.10 16 14 C -0.14 -1.80 8.97 37.15 0.33 -1.47 16 15 C 0.16 2.39 2.67 -67.60 -0.18 2.21 16 16 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.15 -2.70 4.19 -26.73 -0.11 -2.81 16 18 C 0.17 3.75 4.94 -4.04 -0.02 3.73 16 19 N -0.75 -20.20 5.41 -59.91 -0.32 -20.52 16 20 C -0.23 -6.97 10.47 -15.06 -0.16 -7.13 16 21 H 0.08 2.80 8.06 -52.48 -0.42 2.38 16 22 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 23 N -0.94 -31.37 13.97 55.49 0.78 -30.59 16 24 Si 0.89 24.01 27.73 -169.99 -4.71 19.30 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.29 -7.97 7.11 56.52 0.40 -7.56 16 27 H -0.28 -7.16 6.52 56.52 0.37 -6.79 16 28 N -0.27 -3.20 8.56 33.42 0.29 -2.91 16 29 N -0.39 -3.47 6.83 33.50 0.23 -3.24 16 30 H 0.44 2.17 8.96 -190.44 -1.71 0.46 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 37 H 0.14 1.59 3.68 -119.14 -0.44 1.15 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.96 6.76 -51.93 -0.35 0.60 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.97 6.95 -51.93 -0.36 0.61 16 47 H 0.11 2.22 5.54 -53.91 -0.30 1.92 16 48 H 0.04 0.89 5.08 -51.93 -0.26 0.62 16 49 H 0.01 0.25 5.97 -51.93 -0.31 -0.05 16 50 H 0.36 9.51 5.53 -40.82 -0.23 9.29 16 51 H 0.26 8.09 8.31 -40.82 -0.34 7.75 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -37.10 384.73 -10.31 -47.41 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -9.77 Total: 8.20 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.16 Total: -4.27 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 0.48 Total: -66.50 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.06 Total: -9.93 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.71 Total: 19.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.10 -10.31 -47.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316672929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.025 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds