Wall clock time and date at job start Tue Mar 31 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46947 * 2 1 4 4 C 1.35358 * 126.38968 * 275.34140 * 3 2 1 5 5 C 1.41501 * 105.50304 * 180.10213 * 4 3 2 6 6 C 1.47717 * 126.51723 * 179.84254 * 5 4 3 7 7 O 1.21568 * 119.99901 * 354.18475 * 6 5 4 8 8 N 1.34778 * 119.99914 * 174.45438 * 6 5 4 9 9 C 1.46929 * 120.62883 * 5.88891 * 8 6 5 10 10 C 1.52763 * 109.00577 * 233.58300 * 9 8 6 11 11 C 1.53036 * 109.38517 * 305.58970 * 10 9 8 12 12 C 1.53042 * 109.54035 * 61.23850 * 11 10 9 13 13 H 1.09006 * 109.52014 * 58.59961 * 12 11 10 14 14 C 1.52994 * 109.50281 * 178.68211 * 12 11 10 15 15 C 1.46928 * 120.62932 * 186.16992 * 8 6 5 16 16 H 1.08996 * 109.58174 * 246.29868 * 15 8 6 17 17 C 1.53000 * 109.58553 * 6.57837 * 15 8 6 18 18 C 1.53007 * 109.46866 * 66.17075 * 17 15 8 19 19 N 1.46500 * 109.46905 * 175.85428 * 18 17 15 20 20 C 1.36934 * 120.00006 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99609 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00041 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99906 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00329 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47233 * 89.99759 * 24 22 20 26 26 H 1.48495 * 109.47531 * 210.00429 * 24 22 20 27 27 H 1.48506 * 109.46746 * 330.00036 * 24 22 20 28 28 N 1.31800 * 106.96333 * 359.58888 * 5 4 3 29 29 N 1.28469 * 110.07641 * 0.25852 * 28 5 4 30 30 H 0.96994 * 124.88322 * 179.97438 * 29 28 5 31 31 H 1.08995 * 109.47325 * 300.00195 * 1 2 3 32 32 H 1.09008 * 109.46781 * 59.99661 * 1 2 3 33 33 H 1.09000 * 109.47251 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47326 * 240.00540 * 2 1 3 35 35 H 1.08996 * 109.47110 * 120.00204 * 2 1 3 36 36 H 1.08001 * 127.25092 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.58613 * 353.41807 * 9 8 6 38 38 H 1.09003 * 109.58545 * 113.84491 * 9 8 6 39 39 H 1.09000 * 109.55850 * 185.55296 * 10 9 8 40 40 H 1.09005 * 109.38382 * 65.51861 * 10 9 8 41 41 H 1.09002 * 109.45972 * 301.22343 * 11 10 9 42 42 H 1.09002 * 109.44924 * 181.25562 * 11 10 9 43 43 H 1.08993 * 109.47556 * 179.84015 * 14 12 11 44 44 H 1.09006 * 109.46953 * 299.84531 * 14 12 11 45 45 H 1.09006 * 109.47013 * 59.83595 * 14 12 11 46 46 H 1.09002 * 109.46854 * 186.16148 * 17 15 8 47 47 H 1.08995 * 109.47406 * 306.17013 * 17 15 8 48 48 H 1.08994 * 109.46678 * 295.85193 * 18 17 15 49 49 H 1.09001 * 109.47085 * 55.85060 * 18 17 15 50 50 H 0.97004 * 120.00064 * 359.97438 * 19 18 17 51 51 H 0.97003 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2044 2.2118 -1.0849 5 6 2.6916 3.4418 -0.5828 6 6 3.0405 4.6384 -1.3755 7 8 3.0185 4.5905 -2.5901 8 7 3.3883 5.7817 -0.7523 9 6 3.5503 5.8191 0.7075 10 6 2.6838 6.9417 1.2756 11 6 3.0285 8.2556 0.5707 12 6 2.7344 8.1262 -0.9256 13 1 1.6827 7.8789 -1.0701 14 6 3.0483 9.4506 -1.6242 15 6 3.6069 7.0157 -1.5193 16 1 4.6569 7.3018 -1.4596 17 6 3.2202 6.7860 -2.9817 18 6 1.7127 6.5426 -3.0784 19 7 1.3270 6.4210 -4.4864 20 6 0.0180 6.1984 -4.8210 21 1 -0.7300 6.1120 -4.0468 22 6 -0.3475 6.0838 -6.1552 23 7 -1.6058 5.8703 -6.4768 24 14 0.9462 6.2339 -7.4943 25 1 1.5097 4.8924 -7.7909 26 1 0.3253 6.7925 -8.7221 27 1 2.0322 7.1363 -7.0344 28 7 2.7696 3.3186 0.7271 29 7 2.3883 2.1446 1.0831 30 1 2.3604 1.8241 1.9981 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.0124 1.9570 -2.1167 37 1 3.2374 4.8662 1.1344 38 1 4.5952 6.0071 0.9546 39 1 2.8715 7.0421 2.3446 40 1 1.6324 6.7056 1.1114 41 1 4.0856 8.4786 0.7150 42 1 2.4266 9.0615 0.9907 43 1 2.8414 9.3571 -2.6902 44 1 2.4272 10.2405 -1.2015 45 1 4.0998 9.6981 -1.4784 46 1 3.4847 7.6648 -3.5697 47 1 3.7539 5.9170 -3.3665 48 1 1.4587 5.6229 -2.5514 49 1 1.1799 7.3793 -2.6265 50 1 1.9990 6.4983 -5.1818 51 1 -1.8612 5.7898 -7.4092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316672929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:16 Heat of formation + Delta-G solvation = 58.637500 kcal Electronic energy + Delta-G solvation = -30739.948164 eV Core-core repulsion = 26869.588899 eV Total energy + Delta-G solvation = -3870.359265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.76374 -41.72712 -38.63992 -37.03537 -35.49669 -34.84974 -34.07410 -32.98577 -32.76267 -30.46314 -30.12516 -27.59912 -26.85846 -25.21231 -24.69834 -23.97225 -23.56476 -22.32874 -21.98450 -20.91969 -19.93033 -19.30801 -18.85436 -17.67006 -17.10294 -16.83832 -16.61377 -16.24103 -15.96114 -15.66894 -15.46169 -15.29888 -14.98942 -14.84777 -14.63646 -14.45157 -14.29337 -14.19109 -13.80738 -13.61505 -13.34974 -13.33017 -13.06310 -13.00442 -12.69823 -12.50257 -12.45154 -12.30307 -12.18679 -12.09529 -11.91371 -11.86915 -11.73708 -11.41721 -11.24466 -10.91629 -10.81810 -10.36240 -10.05291 -9.97055 -9.49289 -9.12732 -8.02807 -5.32927 0.51114 1.10426 1.34133 1.39377 1.46501 1.77984 2.15132 2.41902 2.48304 3.26971 3.28556 3.58584 3.68237 3.79853 3.84431 3.97479 4.03304 4.14435 4.21868 4.30975 4.39886 4.42593 4.52008 4.53718 4.58906 4.62568 4.68122 4.72745 4.80272 4.85249 4.88395 4.93661 4.99280 5.04959 5.06150 5.12113 5.19578 5.22777 5.28729 5.31789 5.36339 5.40745 5.45336 5.49626 5.58458 5.72899 5.84512 6.14620 6.22486 6.47693 6.89870 7.08702 7.29240 7.88069 8.09368 9.19716 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.004859 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.064206 B = 5761.121409 C = 8420.681003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.050 4.050 3 C 0.044 3.956 4 C -0.211 4.211 5 C -0.025 4.025 6 C 0.579 3.421 7 O -0.536 6.536 8 N -0.594 5.594 9 C 0.070 3.930 10 C -0.128 4.128 11 C -0.108 4.108 12 C -0.108 4.108 13 H 0.050 0.950 14 C -0.141 4.141 15 C 0.164 3.836 16 H 0.095 0.905 17 C -0.134 4.134 18 C 0.173 3.827 19 N -0.753 5.753 20 C -0.227 4.227 21 H 0.045 0.955 22 C -0.065 4.065 23 N -0.986 5.986 24 Si 0.959 3.041 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.256 1.256 28 N -0.257 5.257 29 N -0.364 5.364 30 H 0.462 0.538 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.017 0.983 49 H 0.006 0.994 50 H 0.362 0.638 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.910 -6.497 24.929 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 C -0.084 4.084 4 C -0.239 4.239 5 C -0.185 4.185 6 C 0.366 3.634 7 O -0.413 6.413 8 N -0.326 5.326 9 C -0.052 4.052 10 C -0.166 4.166 11 C -0.145 4.145 12 C -0.127 4.127 13 H 0.069 0.931 14 C -0.198 4.198 15 C 0.061 3.939 16 H 0.113 0.887 17 C -0.171 4.171 18 C 0.048 3.952 19 N -0.397 5.397 20 C -0.358 4.358 21 H 0.063 0.937 22 C -0.256 4.256 23 N -0.637 5.637 24 Si 0.786 3.214 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.180 1.180 28 N -0.093 5.093 29 N -0.080 5.080 30 H 0.310 0.690 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.035 0.965 49 H 0.024 0.976 50 H 0.194 0.806 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.998 -5.942 25.280 29.989 hybrid contribution -0.420 -0.393 -1.716 1.809 sum 14.578 -6.335 23.564 28.424 Atomic orbital electron populations 1.21796 0.94172 1.03207 1.01729 1.20285 0.96097 0.86567 1.05915 1.21714 1.02861 0.97652 0.86147 1.21602 1.08485 0.93237 1.00541 1.21989 1.09049 0.96816 0.90598 1.17445 0.77285 0.82353 0.86295 1.90862 1.52878 1.83359 1.14153 1.47968 1.67549 1.08050 1.09079 1.22812 1.00838 1.03991 0.77579 1.21800 0.99034 0.94662 1.01121 1.21581 1.02753 0.97580 0.92585 1.21612 0.99182 0.95004 0.96901 0.93141 1.21761 1.02659 0.95610 0.99803 1.21300 0.99651 0.83341 0.89644 0.88703 1.22329 0.96291 1.02275 0.96214 1.20974 0.93938 0.96192 0.84113 1.42656 1.05005 1.88245 1.03827 1.18993 0.85260 1.39314 0.92245 0.93668 1.25466 0.98289 1.02651 0.99196 1.69891 1.17500 1.58863 1.17487 0.85344 0.79104 0.78305 0.78655 1.20795 1.21409 1.18042 1.72946 1.20094 1.03000 1.13258 1.43544 1.45953 1.07804 1.10653 0.68958 0.92360 0.94387 0.89766 0.88590 0.87031 0.84055 0.84492 0.90118 0.88130 0.94006 0.89923 0.90874 0.94046 0.91730 0.90551 0.92072 0.88724 0.96472 0.97636 0.80576 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.05 -0.57 6.49 29.85 0.19 -0.38 16 3 C 0.04 0.83 6.48 41.40 0.27 1.10 16 4 C -0.21 -6.19 10.73 22.41 0.24 -5.95 16 5 C -0.03 -0.79 6.91 42.46 0.29 -0.50 16 6 C 0.58 20.84 6.31 86.75 0.55 21.39 16 7 O -0.54 -23.65 10.81 -3.93 -0.04 -23.70 16 8 N -0.59 -17.33 2.94 -799.37 -2.35 -19.68 16 9 C 0.07 1.48 6.31 86.22 0.54 2.03 16 10 C -0.13 -2.40 6.06 30.53 0.19 -2.22 16 11 C -0.11 -2.00 5.17 30.62 0.16 -1.84 16 12 C -0.11 -2.80 1.98 -10.72 -0.02 -2.82 16 13 H 0.05 1.69 5.93 -2.38 -0.01 1.67 16 14 C -0.14 -3.30 8.97 71.98 0.65 -2.65 16 15 C 0.16 4.71 2.67 44.97 0.12 4.83 16 16 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.13 -5.05 4.19 30.60 0.13 -4.92 16 18 C 0.17 8.27 4.94 86.38 0.43 8.69 16 19 N -0.75 -42.10 5.41 -343.45 -1.86 -43.96 16 20 C -0.23 -14.76 10.47 84.03 0.88 -13.88 16 21 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 23 N -0.99 -67.85 13.97 21.65 0.30 -67.55 16 24 Si 0.96 50.55 27.73 68.60 1.90 52.45 16 25 H -0.28 -14.63 7.11 99.48 0.71 -13.93 16 26 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 27 H -0.26 -12.43 6.52 99.48 0.65 -11.78 16 28 N -0.26 -5.88 8.56 -48.18 -0.41 -6.29 16 29 N -0.36 -5.78 6.83 -47.93 -0.33 -6.11 16 30 H 0.46 2.98 8.96 -220.00 -1.97 1.01 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.14 2.93 3.68 -89.33 -0.33 2.61 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 1.17 6.76 -2.39 -0.02 1.15 16 44 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 46 H 0.06 2.18 6.95 -2.39 -0.02 2.17 16 47 H 0.09 3.97 5.54 -33.67 -0.19 3.78 16 48 H 0.02 0.91 5.08 -2.39 -0.01 0.90 16 49 H 0.01 0.29 5.97 -2.39 -0.01 0.27 16 50 H 0.36 19.47 5.53 -92.71 -0.51 18.96 16 51 H 0.26 16.74 8.31 -92.71 -0.77 15.97 16 Total: -1.00 -86.58 384.73 0.92 -85.66 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -2.08 Total: 31.35 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.79 Total: -2.19 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -4.65 Total: -143.58 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.04 Total: -23.70 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.90 Total: 52.45 kcal Total: -86.58 0.92 -85.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316672929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.301 kcal (2) G-P(sol) polarization free energy of solvation -86.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds