Wall clock time and date at job start Tue Mar 31 2020 18:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47553 * 2 1 4 4 N 1.30495 * 125.65075 * 269.69396 * 3 2 1 5 5 C 1.34128 * 109.25527 * 179.89328 * 4 3 2 6 6 C 1.34665 * 108.02209 * 0.36852 * 5 4 3 7 7 N 1.35046 * 125.64531 * 90.00126 * 3 2 1 8 8 C 1.46498 * 126.39829 * 359.97438 * 7 3 2 9 9 H 1.08998 * 109.47225 * 0.02562 * 8 7 3 10 10 C 1.52998 * 109.46835 * 120.00295 * 8 7 3 11 11 C 1.53001 * 109.47031 * 239.99859 * 8 7 3 12 12 C 1.50693 * 109.47322 * 174.99992 * 11 8 7 13 13 O 1.21281 * 119.99861 * 0.02562 * 12 11 8 14 14 N 1.34778 * 120.00027 * 179.97438 * 12 11 8 15 15 C 1.46502 * 119.99816 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.49926 * 35.06574 * 15 14 12 17 17 C 1.53043 * 109.49685 * 155.16350 * 15 14 12 18 18 C 1.53049 * 109.53611 * 181.31664 * 17 15 14 19 19 C 1.53185 * 109.31206 * 298.63602 * 18 17 15 20 20 N 1.46931 * 108.77885 * 54.63548 * 19 18 17 21 21 C 1.36934 * 120.62993 * 126.41084 * 20 19 18 22 22 H 1.08000 * 120.00043 * 332.59305 * 21 20 19 23 23 C 1.38811 * 120.00065 * 152.59433 * 21 20 19 24 24 N 1.31625 * 120.00103 * 159.36289 * 23 21 20 25 25 Si 1.86800 * 119.99650 * 339.36264 * 23 21 20 26 26 H 1.48504 * 109.47153 * 92.92326 * 25 23 21 27 27 H 1.48510 * 109.46934 * 212.91610 * 25 23 21 28 28 H 1.48491 * 109.47390 * 332.91926 * 25 23 21 29 29 C 1.46920 * 118.74012 * 306.39300 * 20 19 18 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46796 * 300.00112 * 1 2 3 32 32 H 1.09002 * 109.46932 * 59.99629 * 1 2 3 33 33 H 1.09000 * 109.47284 * 120.00767 * 2 1 3 34 34 H 1.09009 * 109.46928 * 239.99897 * 2 1 3 35 35 H 1.08002 * 125.98768 * 180.18792 * 5 4 3 36 36 H 1.08004 * 126.59428 * 179.74611 * 6 5 4 37 37 H 1.09005 * 109.46773 * 179.97438 * 10 8 7 38 38 H 1.09002 * 109.47174 * 299.99419 * 10 8 7 39 39 H 1.08998 * 109.47368 * 59.99899 * 10 8 7 40 40 H 1.09000 * 109.47401 * 295.00278 * 11 8 7 41 41 H 1.09007 * 109.46932 * 55.00041 * 11 8 7 42 42 H 0.96990 * 120.00122 * 0.02562 * 14 12 11 43 43 H 1.08997 * 109.46183 * 301.33818 * 17 15 14 44 44 H 1.09000 * 109.45529 * 61.30001 * 17 15 14 45 45 H 1.08994 * 109.49350 * 178.68323 * 18 17 15 46 46 H 1.09000 * 109.49590 * 58.59225 * 18 17 15 47 47 H 1.08999 * 109.58770 * 294.84522 * 19 18 17 48 48 H 1.08998 * 109.58583 * 174.42662 * 19 18 17 49 49 H 0.96993 * 119.99911 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.58845 * 293.82109 * 29 20 19 51 51 H 1.08997 * 109.58839 * 173.39144 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2913 2.1359 -1.0604 5 6 2.7162 3.3505 -0.6818 6 6 2.7285 3.3867 0.6643 7 7 2.2948 2.1627 1.0974 8 6 2.1438 1.7371 2.4911 9 1 1.7805 0.7098 2.5199 10 6 3.4977 1.8189 3.1988 11 6 1.1425 2.6527 3.1983 12 6 0.8940 2.1422 4.5942 13 8 1.4622 1.1446 4.9851 14 7 0.0412 2.7949 5.4085 15 6 -0.1999 2.2989 6.7658 16 1 0.7201 1.8729 7.1663 17 6 -0.6591 3.4546 7.6579 18 6 -0.8797 2.9440 9.0837 19 6 -1.9765 1.8747 9.0749 20 7 -1.6101 0.8293 8.1096 21 6 -1.5691 -0.4862 8.4878 22 1 -1.3648 -0.7463 9.5159 23 6 -1.7902 -1.4852 7.5498 24 7 -1.3667 -2.7099 7.7805 25 14 -2.6888 -1.0915 5.9602 26 1 -1.7014 -0.7492 4.9051 27 1 -3.4799 -2.2735 5.5329 28 1 -3.5994 0.0609 6.1786 29 6 -1.2890 1.2221 6.7308 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8901 35 1 3.0015 4.1570 -1.3410 36 1 3.0243 4.2209 1.2833 37 1 3.3852 1.5026 4.2359 38 1 4.2111 1.1666 2.6950 39 1 3.8614 2.8460 3.1700 40 1 1.5467 3.6638 3.2477 41 1 0.2046 2.6632 2.6429 42 1 -0.4129 3.5929 5.0960 43 1 0.1036 4.2332 7.6649 44 1 -1.5921 3.8638 7.2703 45 1 -1.1842 3.7722 9.7236 46 1 0.0465 2.5122 9.4629 47 1 -2.9246 2.3260 8.7825 48 1 -2.0689 1.4378 10.0692 49 1 -1.5215 -3.4081 7.1252 50 1 -2.1810 1.6203 6.2471 51 1 -0.9276 0.3547 6.1785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316944738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:29 Heat of formation + Delta-G solvation = 37.770859 kcal Electronic energy + Delta-G solvation = -30102.110031 eV Core-core repulsion = 26230.845920 eV Total energy + Delta-G solvation = -3871.264110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.34083 -39.99262 -37.88915 -35.78564 -34.40790 -33.94503 -32.79795 -31.12488 -30.75589 -29.63875 -28.74921 -27.74438 -25.35738 -24.13422 -23.47690 -22.77553 -21.92946 -21.10622 -20.32966 -19.58410 -19.32713 -17.66548 -16.89818 -16.55978 -16.10322 -15.67779 -15.44582 -15.22311 -14.92803 -14.32787 -14.29368 -14.02712 -13.91752 -13.77186 -13.59621 -13.43621 -13.27741 -13.05114 -12.85404 -12.48472 -12.37979 -12.30262 -12.06507 -11.78181 -11.74927 -11.62103 -11.44112 -11.21195 -11.15529 -10.82349 -10.68417 -10.31877 -10.27099 -10.11939 -9.84250 -9.80811 -9.64871 -9.49350 -8.98087 -8.56777 -8.48429 -7.02064 -5.97050 -3.33664 1.90682 2.48805 2.64007 3.03357 3.27068 3.31894 3.44041 3.46582 4.19475 4.26136 4.46825 4.51181 4.55334 4.71664 4.87156 4.96484 4.99560 5.08272 5.10995 5.13368 5.18645 5.19199 5.24367 5.39975 5.40358 5.42997 5.44224 5.60526 5.64092 5.72678 5.74060 5.82737 5.86976 5.94944 5.99604 6.04215 6.13345 6.19448 6.24492 6.35769 6.46033 6.54561 6.58046 6.64777 6.70642 6.85767 7.05859 7.54884 7.92658 8.00320 8.27858 8.30800 8.90271 9.69438 10.04917 11.18801 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003469 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.102319 B = 8069.168980 C = 9346.095116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.213 3.787 4 N -0.494 5.494 5 C -0.032 4.032 6 C -0.058 4.058 7 N -0.447 5.447 8 C 0.144 3.856 9 H 0.113 0.887 10 C -0.165 4.165 11 C -0.151 4.151 12 C 0.512 3.488 13 O -0.524 6.524 14 N -0.723 5.723 15 C 0.125 3.875 16 H 0.093 0.907 17 C -0.116 4.116 18 C -0.132 4.132 19 C 0.145 3.855 20 N -0.601 5.601 21 C -0.264 4.264 22 H 0.087 0.913 23 C 0.029 3.971 24 N -0.903 5.903 25 Si 0.881 3.119 26 H -0.288 1.288 27 H -0.302 1.302 28 H -0.273 1.273 29 C 0.121 3.879 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.395 0.605 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.066 0.934 49 H 0.263 0.737 50 H 0.023 0.977 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 15.547 -11.112 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.050 4.050 4 N -0.213 5.213 5 C -0.180 4.180 6 C -0.191 4.191 7 N -0.130 5.130 8 C 0.041 3.959 9 H 0.131 0.869 10 C -0.222 4.222 11 C -0.192 4.192 12 C 0.297 3.703 13 O -0.399 6.399 14 N -0.374 5.374 15 C 0.020 3.980 16 H 0.111 0.889 17 C -0.154 4.154 18 C -0.172 4.172 19 C 0.019 3.981 20 N -0.325 5.325 21 C -0.392 4.392 22 H 0.105 0.895 23 C -0.171 4.171 24 N -0.546 5.546 25 Si 0.711 3.289 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.198 1.198 29 C -0.006 4.006 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.228 0.772 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.041 0.959 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.223 14.308 -11.497 19.381 hybrid contribution -0.626 1.067 -0.326 1.279 sum 5.597 15.375 -11.823 20.187 Atomic orbital electron populations 1.21746 0.93809 1.02645 1.02378 1.20015 0.96595 0.87428 1.04157 1.23300 1.03684 0.96676 0.81318 1.70240 1.18485 1.04265 1.28270 1.22242 1.06794 0.96229 0.92733 1.22583 1.09718 0.90096 0.96688 1.45647 1.48389 1.11787 1.07165 1.21204 0.97309 1.00048 0.77324 0.86889 1.22279 0.94298 1.02350 1.03291 1.21992 1.01415 1.01151 0.94604 1.20169 0.79495 0.84130 0.86507 1.90771 1.48772 1.24589 1.75814 1.46124 1.45552 1.30326 1.15357 1.21814 1.01215 0.95209 0.79808 0.88927 1.21682 1.00623 0.96710 0.96419 1.22000 1.01366 0.99014 0.94830 1.20993 0.93764 0.89087 0.94281 1.44285 1.78492 1.03768 1.05941 1.18894 1.43518 0.79547 0.97280 0.89531 1.25255 0.99005 0.94961 0.97846 1.69831 1.46536 1.01871 1.36327 0.86972 0.80512 0.76809 0.84590 1.21589 1.23050 1.19777 1.21681 0.94093 0.96716 0.88120 0.91353 0.92841 0.91904 0.90177 0.88684 0.81582 0.81286 0.88122 0.91895 0.92358 0.88214 0.88326 0.77160 0.92465 0.92117 0.92098 0.91614 0.95898 0.91579 0.92710 0.95938 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 37.16 0.37 -1.16 16 2 C -0.04 -0.46 6.08 -27.89 -0.17 -0.63 16 3 C 0.21 2.65 7.16 -155.42 -1.11 1.54 16 4 N -0.49 -6.77 11.25 -10.82 -0.12 -6.89 16 5 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 6 C -0.06 -0.58 10.70 -16.56 -0.18 -0.76 16 7 N -0.45 -5.00 2.61 -106.83 -0.28 -5.27 16 8 C 0.14 1.60 2.64 -67.93 -0.18 1.42 16 9 H 0.11 1.42 6.48 -51.93 -0.34 1.08 16 10 C -0.16 -1.77 8.99 37.16 0.33 -1.44 16 11 C -0.15 -1.53 5.18 -27.89 -0.14 -1.67 16 12 C 0.51 7.26 7.51 -10.99 -0.08 7.18 16 13 O -0.52 -9.74 13.63 5.56 0.08 -9.66 16 14 N -0.72 -9.64 5.08 -53.68 -0.27 -9.91 16 15 C 0.12 2.11 2.60 -67.81 -0.18 1.93 16 16 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 17 C -0.12 -1.58 5.35 -26.68 -0.14 -1.72 16 18 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 19 C 0.14 2.70 6.52 -3.71 -0.02 2.67 16 20 N -0.60 -14.07 2.77 -172.32 -0.48 -14.55 16 21 C -0.26 -7.40 10.03 -15.06 -0.15 -7.55 16 22 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 23 C 0.03 0.84 5.23 -17.43 -0.09 0.75 16 24 N -0.90 -28.03 13.97 55.49 0.78 -27.26 16 25 Si 0.88 22.74 24.34 -169.99 -4.14 18.60 16 26 H -0.29 -7.35 6.62 56.52 0.37 -6.97 16 27 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 28 H -0.27 -6.84 6.63 56.52 0.37 -6.46 16 29 C 0.12 2.61 3.78 -3.71 -0.01 2.59 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.81 7.08 -51.93 -0.37 0.44 16 34 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 40 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 42 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 49 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.02 0.48 7.08 -51.93 -0.37 0.11 16 51 H 0.08 1.99 4.50 -51.93 -0.23 1.76 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -34.80 396.92 -9.30 -44.10 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.71 Total: 4.40 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.14 Total: 0.46 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.37 Total: -63.88 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.80 -9.30 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316944738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.876 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds