Wall clock time and date at job start Tue Mar 31 2020 18:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47553 * 2 1 4 4 N 1.30495 * 125.65075 * 269.69396 * 3 2 1 5 5 C 1.34128 * 109.25527 * 179.89328 * 4 3 2 6 6 C 1.34665 * 108.02209 * 0.36852 * 5 4 3 7 7 N 1.35046 * 125.64531 * 90.00126 * 3 2 1 8 8 C 1.46498 * 126.39829 * 359.97438 * 7 3 2 9 9 H 1.08998 * 109.47225 * 0.02562 * 8 7 3 10 10 C 1.52998 * 109.46835 * 120.00295 * 8 7 3 11 11 C 1.53001 * 109.47031 * 239.99859 * 8 7 3 12 12 C 1.50693 * 109.47322 * 174.99992 * 11 8 7 13 13 O 1.21281 * 119.99861 * 0.02562 * 12 11 8 14 14 N 1.34778 * 120.00027 * 179.97438 * 12 11 8 15 15 C 1.46502 * 119.99816 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.49926 * 35.06574 * 15 14 12 17 17 C 1.53043 * 109.49685 * 155.16350 * 15 14 12 18 18 C 1.53049 * 109.53611 * 181.31664 * 17 15 14 19 19 C 1.53185 * 109.31206 * 298.63602 * 18 17 15 20 20 N 1.46931 * 108.77885 * 54.63548 * 19 18 17 21 21 C 1.36934 * 120.62993 * 126.41084 * 20 19 18 22 22 H 1.08000 * 120.00043 * 332.59305 * 21 20 19 23 23 C 1.38811 * 120.00065 * 152.59433 * 21 20 19 24 24 N 1.31625 * 120.00103 * 159.36289 * 23 21 20 25 25 Si 1.86800 * 119.99650 * 339.36264 * 23 21 20 26 26 H 1.48504 * 109.47153 * 92.92326 * 25 23 21 27 27 H 1.48510 * 109.46934 * 212.91610 * 25 23 21 28 28 H 1.48491 * 109.47390 * 332.91926 * 25 23 21 29 29 C 1.46920 * 118.74012 * 306.39300 * 20 19 18 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46796 * 300.00112 * 1 2 3 32 32 H 1.09002 * 109.46932 * 59.99629 * 1 2 3 33 33 H 1.09000 * 109.47284 * 120.00767 * 2 1 3 34 34 H 1.09009 * 109.46928 * 239.99897 * 2 1 3 35 35 H 1.08002 * 125.98768 * 180.18792 * 5 4 3 36 36 H 1.08004 * 126.59428 * 179.74611 * 6 5 4 37 37 H 1.09005 * 109.46773 * 179.97438 * 10 8 7 38 38 H 1.09002 * 109.47174 * 299.99419 * 10 8 7 39 39 H 1.08998 * 109.47368 * 59.99899 * 10 8 7 40 40 H 1.09000 * 109.47401 * 295.00278 * 11 8 7 41 41 H 1.09007 * 109.46932 * 55.00041 * 11 8 7 42 42 H 0.96990 * 120.00122 * 0.02562 * 14 12 11 43 43 H 1.08997 * 109.46183 * 301.33818 * 17 15 14 44 44 H 1.09000 * 109.45529 * 61.30001 * 17 15 14 45 45 H 1.08994 * 109.49350 * 178.68323 * 18 17 15 46 46 H 1.09000 * 109.49590 * 58.59225 * 18 17 15 47 47 H 1.08999 * 109.58770 * 294.84522 * 19 18 17 48 48 H 1.08998 * 109.58583 * 174.42662 * 19 18 17 49 49 H 0.96993 * 119.99911 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.58845 * 293.82109 * 29 20 19 51 51 H 1.08997 * 109.58839 * 173.39144 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2913 2.1359 -1.0604 5 6 2.7162 3.3505 -0.6818 6 6 2.7285 3.3867 0.6643 7 7 2.2948 2.1627 1.0974 8 6 2.1438 1.7371 2.4911 9 1 1.7805 0.7098 2.5199 10 6 3.4977 1.8189 3.1988 11 6 1.1425 2.6527 3.1983 12 6 0.8940 2.1422 4.5942 13 8 1.4622 1.1446 4.9851 14 7 0.0412 2.7949 5.4085 15 6 -0.1999 2.2989 6.7658 16 1 0.7201 1.8729 7.1663 17 6 -0.6591 3.4546 7.6579 18 6 -0.8797 2.9440 9.0837 19 6 -1.9765 1.8747 9.0749 20 7 -1.6101 0.8293 8.1096 21 6 -1.5691 -0.4862 8.4878 22 1 -1.3648 -0.7463 9.5159 23 6 -1.7902 -1.4852 7.5498 24 7 -1.3667 -2.7099 7.7805 25 14 -2.6888 -1.0915 5.9602 26 1 -1.7014 -0.7492 4.9051 27 1 -3.4799 -2.2735 5.5329 28 1 -3.5994 0.0609 6.1786 29 6 -1.2890 1.2221 6.7308 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8901 35 1 3.0015 4.1570 -1.3410 36 1 3.0243 4.2209 1.2833 37 1 3.3852 1.5026 4.2359 38 1 4.2111 1.1666 2.6950 39 1 3.8614 2.8460 3.1700 40 1 1.5467 3.6638 3.2477 41 1 0.2046 2.6632 2.6429 42 1 -0.4129 3.5929 5.0960 43 1 0.1036 4.2332 7.6649 44 1 -1.5921 3.8638 7.2703 45 1 -1.1842 3.7722 9.7236 46 1 0.0465 2.5122 9.4629 47 1 -2.9246 2.3260 8.7825 48 1 -2.0689 1.4378 10.0692 49 1 -1.5215 -3.4081 7.1252 50 1 -2.1810 1.6203 6.2471 51 1 -0.9276 0.3547 6.1785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316944738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:28 Heat of formation + Delta-G solvation = 14.325414 kcal Electronic energy + Delta-G solvation = -30103.126701 eV Core-core repulsion = 26230.845920 eV Total energy + Delta-G solvation = -3872.280781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.18846 -41.18197 -39.31564 -36.77491 -35.86273 -34.77125 -34.50125 -32.62185 -32.06569 -30.87030 -29.57027 -28.74523 -27.21453 -25.03625 -24.57433 -24.12221 -23.31037 -22.08234 -21.54492 -20.88026 -20.23507 -18.89458 -18.55883 -17.81003 -17.29093 -16.91299 -16.65598 -16.31329 -15.99066 -15.79506 -15.48819 -15.23530 -15.20142 -14.94285 -14.61999 -14.57843 -14.40610 -14.33526 -14.05647 -13.92401 -13.81133 -13.42745 -13.26590 -13.02442 -12.64064 -12.62030 -12.59685 -12.50557 -12.43534 -12.27247 -12.04556 -11.80490 -11.71838 -11.67047 -11.35774 -11.09091 -10.84220 -10.80757 -10.61196 -10.15884 -9.29609 -8.94865 -8.22192 -5.53034 1.08159 1.22451 1.30164 1.39744 1.54555 1.58884 2.17678 2.23299 2.36194 3.02791 3.32602 3.35498 3.44649 3.60887 3.72632 3.81205 3.88631 4.03373 4.05620 4.15707 4.18939 4.27724 4.32947 4.37456 4.40167 4.42463 4.44544 4.62374 4.63939 4.67121 4.75940 4.78721 4.82373 4.88939 4.91264 5.00398 5.01679 5.08155 5.13622 5.15361 5.19512 5.22666 5.40181 5.44487 5.55102 5.83397 5.87203 6.08254 6.20273 6.51995 6.87867 7.15675 7.24622 7.58775 7.97378 8.97827 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003469 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.102319 B = 8069.168980 C = 9346.095116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C 0.193 3.807 4 N -0.525 5.525 5 C -0.053 4.053 6 C -0.046 4.046 7 N -0.446 5.446 8 C 0.147 3.853 9 H 0.090 0.910 10 C -0.157 4.157 11 C -0.136 4.136 12 C 0.509 3.491 13 O -0.575 6.575 14 N -0.709 5.709 15 C 0.137 3.863 16 H 0.057 0.943 17 C -0.106 4.106 18 C -0.125 4.125 19 C 0.135 3.865 20 N -0.618 5.618 21 C -0.249 4.249 22 H 0.054 0.946 23 C -0.034 4.034 24 N -0.955 5.955 25 Si 0.947 3.053 26 H -0.289 1.289 27 H -0.309 1.309 28 H -0.255 1.255 29 C 0.119 3.881 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.187 0.813 36 H 0.206 0.794 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.419 0.581 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.260 0.740 50 H 0.035 0.965 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 20.229 -12.138 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.069 4.069 4 N -0.244 5.244 5 C -0.200 4.200 6 C -0.179 4.179 7 N -0.128 5.128 8 C 0.043 3.957 9 H 0.108 0.892 10 C -0.215 4.215 11 C -0.176 4.176 12 C 0.295 3.705 13 O -0.454 6.454 14 N -0.362 5.362 15 C 0.030 3.970 16 H 0.076 0.924 17 C -0.144 4.144 18 C -0.164 4.164 19 C 0.011 3.989 20 N -0.343 5.343 21 C -0.379 4.379 22 H 0.072 0.928 23 C -0.229 4.229 24 N -0.601 5.601 25 Si 0.776 3.224 26 H -0.217 1.217 27 H -0.238 1.238 28 H -0.179 1.179 29 C -0.007 4.007 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.204 0.796 36 H 0.223 0.777 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.129 0.871 42 H 0.256 0.744 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.120 0.880 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.053 0.947 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.761 19.093 -12.537 23.557 hybrid contribution -0.423 -0.353 0.074 0.556 sum 5.339 18.740 -12.464 23.131 Atomic orbital electron populations 1.21698 0.93618 1.02978 1.01752 1.20039 0.96746 0.87150 1.04301 1.23492 1.04501 0.97251 0.81659 1.70209 1.19416 1.05591 1.29195 1.22708 1.07256 0.96109 0.93952 1.23136 1.07901 0.90114 0.96701 1.45646 1.48297 1.12177 1.06691 1.21084 0.97702 0.99367 0.77521 0.89184 1.22175 0.94122 1.03606 1.01588 1.21931 1.01890 1.02397 0.91397 1.20883 0.78569 0.83230 0.87795 1.90775 1.50650 1.26941 1.77022 1.45899 1.45432 1.30858 1.13969 1.21352 0.97847 0.95509 0.82293 0.92429 1.21663 1.02789 0.95664 0.94304 1.21914 0.98951 0.98790 0.96761 1.21264 0.96140 0.88886 0.92575 1.44441 1.79335 1.02988 1.07582 1.18882 1.41062 0.82118 0.95824 0.92807 1.25901 1.00557 0.94900 1.01535 1.69968 1.49128 1.03101 1.37932 0.85902 0.79107 0.76646 0.80715 1.21674 1.23792 1.17887 1.21653 0.95843 0.96701 0.86525 0.90587 0.93740 0.92061 0.90311 0.88242 0.79625 0.77731 0.90465 0.92473 0.89928 0.84322 0.87108 0.74383 0.89000 0.89692 0.88010 0.93413 0.93906 0.92681 0.93089 0.94746 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.04 -0.93 6.08 29.85 0.18 -0.74 16 3 C 0.19 4.65 7.16 138.13 0.99 5.64 16 4 N -0.52 -13.79 11.25 -188.13 -2.12 -15.91 16 5 C -0.05 -1.08 11.87 83.52 0.99 -0.09 16 6 C -0.05 -0.77 10.70 83.08 0.89 0.12 16 7 N -0.45 -9.03 2.61 -491.91 -1.28 -10.31 16 8 C 0.15 3.03 2.64 44.99 0.12 3.15 16 9 H 0.09 2.29 6.48 -2.39 -0.02 2.28 16 10 C -0.16 -3.18 8.99 71.98 0.65 -2.53 16 11 C -0.14 -2.31 5.18 29.85 0.15 -2.16 16 12 C 0.51 13.48 7.51 87.65 0.66 14.14 16 13 O -0.57 -21.69 13.63 -3.03 -0.04 -21.73 16 14 N -0.71 -16.65 5.08 -442.15 -2.25 -18.90 16 15 C 0.14 4.33 2.60 45.07 0.12 4.45 16 16 H 0.06 2.26 7.58 -2.38 -0.02 2.24 16 17 C -0.11 -2.39 5.35 30.62 0.16 -2.22 16 18 C -0.12 -3.27 6.08 30.67 0.19 -3.09 16 19 C 0.14 4.80 6.52 86.36 0.56 5.36 16 20 N -0.62 -28.85 2.77 -699.11 -1.94 -30.79 16 21 C -0.25 -14.45 10.03 84.03 0.84 -13.61 16 22 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 23 C -0.03 -2.06 5.23 84.86 0.44 -1.62 16 24 N -0.96 -62.33 13.97 21.65 0.30 -62.03 16 25 Si 0.95 48.57 24.34 68.60 1.67 50.24 16 26 H -0.29 -14.69 6.62 99.48 0.66 -14.03 16 27 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 28 H -0.25 -12.11 6.63 99.48 0.66 -11.45 16 29 C 0.12 5.01 3.78 86.36 0.33 5.34 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.66 7.08 -2.39 -0.02 1.64 16 34 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.08 1.99 5.95 -2.38 -0.01 1.98 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.23 7.95 -2.39 -0.02 1.21 16 40 H 0.14 1.32 8.09 -2.39 -0.02 1.31 16 41 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.42 5.97 8.60 -92.72 -0.80 5.17 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 49 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 50 H 0.03 1.37 7.08 -2.39 -0.02 1.35 16 51 H 0.04 1.84 4.50 -2.39 -0.01 1.82 16 Total: -1.00 -82.17 396.92 2.36 -79.81 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.02 Total: 19.67 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 7.99 Total: 9.93 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -7.28 Total: -137.93 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.67 Total: 50.24 kcal Total: -82.17 2.36 -79.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316944738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.138 kcal (2) G-P(sol) polarization free energy of solvation -82.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds