Wall clock time and date at job start Tue Mar 31 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47243 * 2 1 4 4 C 1.34665 * 126.59203 * 274.68654 * 3 2 1 5 5 N 1.34132 * 108.02055 * 179.87560 * 4 3 2 6 6 C 1.30496 * 109.25545 * 0.39211 * 5 4 3 7 7 C 1.50702 * 125.64790 * 179.73034 * 6 5 4 8 8 C 1.50697 * 109.47554 * 305.03168 * 7 6 5 9 9 O 1.21277 * 119.99808 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00013 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99958 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46896 * 325.00354 * 11 10 8 13 13 C 1.53006 * 109.46894 * 85.00119 * 11 10 8 14 14 C 1.52998 * 109.46992 * 205.00095 * 11 10 8 15 15 H 1.08992 * 109.50111 * 59.93882 * 14 11 10 16 16 C 1.53039 * 109.49593 * 180.02562 * 14 11 10 17 17 C 1.53042 * 109.54051 * 181.31700 * 16 14 11 18 18 C 1.53195 * 109.31080 * 298.63210 * 17 16 14 19 19 N 1.46928 * 108.77262 * 54.63556 * 18 17 16 20 20 C 1.36941 * 120.63305 * 126.41312 * 19 18 17 21 21 H 1.07999 * 120.00046 * 207.66898 * 20 19 18 22 22 C 1.38815 * 119.99808 * 27.66663 * 20 19 18 23 23 N 1.31616 * 119.99816 * 17.36766 * 22 20 19 24 24 Si 1.86799 * 119.99776 * 197.37083 * 22 20 19 25 25 H 1.48493 * 109.47234 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47009 * 120.00188 * 24 22 20 27 27 H 1.48500 * 109.46881 * 239.99596 * 24 22 20 28 28 C 1.46931 * 118.73966 * 306.38724 * 19 18 17 29 29 N 1.35038 * 108.70020 * 359.75971 * 6 5 4 30 30 H 0.97000 * 126.39471 * 179.97438 * 29 6 5 31 31 H 1.09003 * 109.46674 * 60.00328 * 1 2 3 32 32 H 1.08994 * 109.47176 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47542 * 300.00482 * 1 2 3 34 34 H 1.08997 * 109.47046 * 239.99691 * 2 1 3 35 35 H 1.09003 * 109.46674 * 119.99672 * 2 1 3 36 36 H 1.08002 * 125.99275 * 0.02562 * 4 3 2 37 37 H 1.09007 * 109.46639 * 65.03319 * 7 6 5 38 38 H 1.08998 * 109.47267 * 185.02803 * 7 6 5 39 39 H 0.97000 * 120.00331 * 359.97438 * 10 8 7 40 40 H 1.08995 * 109.47137 * 300.00211 * 13 11 10 41 41 H 1.09006 * 109.46863 * 59.99945 * 13 11 10 42 42 H 1.08998 * 109.46899 * 179.97438 * 13 11 10 43 43 H 1.08997 * 109.46393 * 301.33555 * 16 14 11 44 44 H 1.09001 * 109.45895 * 61.30849 * 16 14 11 45 45 H 1.08995 * 109.49596 * 58.58466 * 17 16 14 46 46 H 1.08998 * 109.50103 * 178.65509 * 17 16 14 47 47 H 1.08998 * 109.58469 * 174.41614 * 18 17 16 48 48 H 1.08991 * 109.59103 * 294.85180 * 18 17 16 49 49 H 0.97008 * 119.99638 * 180.02562 * 23 22 20 50 50 H 1.08992 * 109.58721 * 293.82557 * 28 19 18 51 51 H 1.09000 * 109.58230 * 173.39594 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2167 2.2070 -1.0776 5 7 2.6708 3.3951 -0.6516 6 6 2.7828 3.3720 0.6483 7 6 3.2661 4.5111 1.5086 8 6 4.6211 4.9635 1.0285 9 8 5.1431 4.4146 0.0814 10 7 5.2526 5.9780 1.6517 11 6 6.5701 6.4174 1.1853 12 1 7.1358 5.5559 0.8305 13 6 6.3982 7.4204 0.0427 14 6 7.3237 7.0825 2.3388 15 1 7.4454 6.3687 3.1534 16 6 8.6998 7.5424 1.8521 17 6 9.4673 8.1784 3.0134 18 6 8.6986 9.4038 3.5179 19 7 7.3269 8.9969 3.8520 20 6 6.8002 9.2667 5.0869 21 1 6.0311 8.6290 5.4970 22 6 7.2550 10.3599 5.8116 23 7 7.9208 11.3201 5.2058 24 14 6.9219 10.4680 7.6465 25 1 6.1595 9.2707 8.0825 26 1 8.2112 10.5290 8.3808 27 1 6.1299 11.6907 7.9346 28 6 6.5307 8.2954 2.8356 29 7 2.3946 2.1582 1.0949 30 1 2.3762 1.8637 2.0189 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0292 1.9305 -2.1046 37 1 2.5617 5.3404 1.4426 38 1 3.3399 4.1785 2.5439 39 1 4.8349 6.4172 2.4090 40 1 5.8613 6.9466 -0.7790 41 1 5.8324 8.2819 0.3976 42 1 7.3784 7.7477 -0.3040 43 1 9.2570 6.6847 1.4752 44 1 8.5767 8.2746 1.0541 45 1 9.5691 7.4545 3.8219 46 1 10.4562 8.4841 2.6720 47 1 9.1883 9.8018 4.4066 48 1 8.6742 10.1659 2.7392 49 1 8.2389 12.0838 5.7124 50 1 6.3296 8.9672 2.0013 51 1 5.5901 7.9623 3.2742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317202056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:30 Heat of formation + Delta-G solvation = 23.354883 kcal Electronic energy + Delta-G solvation = -28954.093723 eV Core-core repulsion = 25082.204490 eV Total energy + Delta-G solvation = -3871.889234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -42.28305 -39.76776 -37.97989 -35.16510 -34.45542 -33.07454 -32.61506 -31.77040 -30.51990 -30.43818 -28.10178 -27.17957 -25.30776 -24.02929 -23.53726 -22.25264 -21.47437 -21.06566 -20.37389 -19.91759 -18.59246 -17.57997 -17.20394 -16.57465 -15.76243 -15.44091 -15.15734 -14.86606 -14.74877 -14.54214 -14.24737 -13.92103 -13.80311 -13.63764 -13.47965 -13.13199 -13.04878 -12.74647 -12.68413 -12.37449 -12.31709 -12.07139 -11.94945 -11.75487 -11.58201 -11.54609 -11.01034 -10.93441 -10.56243 -10.45740 -10.17987 -10.12509 -10.10083 -9.95772 -9.88959 -9.75165 -9.55911 -9.39304 -8.83913 -8.48665 -8.37103 -6.68685 -5.81521 -3.23786 1.80860 2.71911 2.78005 3.02676 3.33831 3.41808 3.43373 3.48165 4.15076 4.45479 4.47689 4.58500 4.75783 4.88096 4.89780 5.11432 5.13262 5.20224 5.25304 5.26274 5.39239 5.39516 5.45451 5.46192 5.59459 5.61911 5.71574 5.75738 5.76656 5.90648 6.04830 6.09258 6.18094 6.25008 6.28785 6.37367 6.53029 6.58902 6.62538 6.69380 6.72415 6.80592 6.87705 6.99300 7.16496 7.39542 7.65860 7.67403 7.76159 8.02208 8.38111 8.41881 9.18221 9.82187 10.38938 11.26555 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002253 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.690529 B =12422.555395 C =13546.999762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.027 4.027 4 C -0.021 4.021 5 N -0.457 5.457 6 C 0.222 3.778 7 C -0.058 4.058 8 C 0.517 3.483 9 O -0.520 6.520 10 N -0.722 5.722 11 C 0.153 3.847 12 H 0.080 0.920 13 C -0.165 4.165 14 C -0.112 4.112 15 H 0.070 0.930 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.170 3.830 19 N -0.591 5.591 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.152 3.848 29 N -0.563 5.563 30 H 0.415 0.585 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.167 0.833 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.402 0.598 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.025 0.975 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 -18.929 -7.794 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.170 4.170 5 N -0.175 5.175 6 C -0.042 4.042 7 C -0.100 4.100 8 C 0.301 3.699 9 O -0.395 6.395 10 N -0.375 5.375 11 C 0.048 3.952 12 H 0.098 0.902 13 C -0.223 4.223 14 C -0.133 4.133 15 H 0.089 0.911 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.314 5.314 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.025 3.975 29 N -0.167 5.167 30 H 0.253 0.747 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.184 0.816 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.237 0.763 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.036 0.964 49 H 0.063 0.937 50 H 0.043 0.957 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.131 -18.478 -8.962 22.900 hybrid contribution -0.501 -0.453 2.339 2.434 sum -10.632 -18.931 -6.623 22.700 Atomic orbital electron populations 1.21778 0.94474 1.01843 1.02436 1.19969 0.95974 0.89171 1.03360 1.21202 1.09291 0.96377 0.87326 1.22103 1.05853 0.90503 0.98544 1.70249 1.16506 1.22967 1.07814 1.22242 1.04017 0.86793 0.91127 1.19966 0.96421 0.95492 0.98081 1.20028 0.86378 0.80171 0.83369 1.90752 1.66541 1.55464 1.26768 1.46153 1.20661 1.35559 1.35149 1.20980 0.82627 0.96988 0.94599 0.90236 1.22257 1.02451 0.99488 0.98116 1.21942 0.96176 0.99091 0.96083 0.91113 1.21437 0.94758 0.99347 0.98394 1.22180 0.98053 1.00681 0.97250 1.20790 0.84366 0.90958 0.99485 1.44035 1.09712 1.66615 1.10998 1.19183 1.20427 1.06351 0.92226 0.91765 1.25033 1.01041 0.94912 0.98713 1.70051 1.41646 1.08603 1.34173 0.86255 0.77535 0.77427 0.85722 1.20331 1.21586 1.21757 1.20970 0.92998 0.91402 0.92119 1.43083 1.51554 1.12450 1.09614 0.74744 0.92030 0.92101 0.92908 0.89470 0.91367 0.81619 0.86219 0.87572 0.76296 0.92703 0.91718 0.91526 0.93581 0.92131 0.92866 0.93255 0.89607 0.96448 0.93682 0.95687 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.05 -0.28 6.49 -27.89 -0.18 -0.46 16 3 C -0.03 -0.25 6.49 -81.60 -0.53 -0.78 16 4 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 5 N -0.46 -6.77 10.58 -10.82 -0.11 -6.88 16 6 C 0.22 2.68 6.96 -155.42 -1.08 1.60 16 7 C -0.06 -0.57 6.33 -29.04 -0.18 -0.75 16 8 C 0.52 7.04 7.78 -10.99 -0.09 6.96 16 9 O -0.52 -9.32 15.21 5.56 0.08 -9.24 16 10 N -0.72 -9.31 5.00 -53.81 -0.27 -9.58 16 11 C 0.15 2.22 2.41 -67.93 -0.16 2.06 16 12 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 13 C -0.17 -2.38 8.79 37.16 0.33 -2.05 16 14 C -0.11 -1.82 2.33 -90.50 -0.21 -2.03 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.10 -1.66 4.77 -26.69 -0.13 -1.79 16 17 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 18 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 19 N -0.59 -14.12 3.00 -172.32 -0.52 -14.64 16 20 C -0.25 -6.64 9.59 -15.06 -0.14 -6.78 16 21 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 22 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 23 N -0.90 -25.63 11.19 55.49 0.62 -25.01 16 24 Si 0.90 21.12 29.59 -169.99 -5.03 16.10 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 C 0.15 2.91 5.30 -3.71 -0.02 2.89 16 29 N -0.56 -5.18 6.15 -6.54 -0.04 -5.22 16 30 H 0.42 2.43 8.96 -40.82 -0.37 2.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 4.56 6.98 -40.82 -0.28 4.27 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.95 6.32 -51.93 -0.33 0.62 16 42 H 0.07 0.92 6.46 -51.93 -0.34 0.59 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.99 6.50 -51.93 -0.34 0.65 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.03 0.50 6.18 -51.93 -0.32 0.18 16 51 H 0.05 0.85 6.52 -51.93 -0.34 0.51 16 LS Contribution 398.88 15.07 6.01 6.01 Total: -1.00 -34.43 398.88 -10.25 -44.68 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.49 Total: 4.74 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.32 Total: -61.32 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.43 -10.25 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317202056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.033 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds