Wall clock time and date at job start Tue Mar 31 2020 18:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47243 * 2 1 4 4 C 1.34665 * 126.59203 * 274.68654 * 3 2 1 5 5 N 1.34132 * 108.02055 * 179.87560 * 4 3 2 6 6 C 1.30496 * 109.25545 * 0.39211 * 5 4 3 7 7 C 1.50702 * 125.64790 * 179.73034 * 6 5 4 8 8 C 1.50697 * 109.47554 * 305.03168 * 7 6 5 9 9 O 1.21277 * 119.99808 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00013 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99958 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46896 * 325.00354 * 11 10 8 13 13 C 1.53006 * 109.46894 * 85.00119 * 11 10 8 14 14 C 1.52998 * 109.46992 * 205.00095 * 11 10 8 15 15 H 1.08992 * 109.50111 * 59.93882 * 14 11 10 16 16 C 1.53039 * 109.49593 * 180.02562 * 14 11 10 17 17 C 1.53042 * 109.54051 * 181.31700 * 16 14 11 18 18 C 1.53195 * 109.31080 * 298.63210 * 17 16 14 19 19 N 1.46928 * 108.77262 * 54.63556 * 18 17 16 20 20 C 1.36941 * 120.63305 * 126.41312 * 19 18 17 21 21 H 1.07999 * 120.00046 * 207.66898 * 20 19 18 22 22 C 1.38815 * 119.99808 * 27.66663 * 20 19 18 23 23 N 1.31616 * 119.99816 * 17.36766 * 22 20 19 24 24 Si 1.86799 * 119.99776 * 197.37083 * 22 20 19 25 25 H 1.48493 * 109.47234 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47009 * 120.00188 * 24 22 20 27 27 H 1.48500 * 109.46881 * 239.99596 * 24 22 20 28 28 C 1.46931 * 118.73966 * 306.38724 * 19 18 17 29 29 N 1.35038 * 108.70020 * 359.75971 * 6 5 4 30 30 H 0.97000 * 126.39471 * 179.97438 * 29 6 5 31 31 H 1.09003 * 109.46674 * 60.00328 * 1 2 3 32 32 H 1.08994 * 109.47176 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47542 * 300.00482 * 1 2 3 34 34 H 1.08997 * 109.47046 * 239.99691 * 2 1 3 35 35 H 1.09003 * 109.46674 * 119.99672 * 2 1 3 36 36 H 1.08002 * 125.99275 * 0.02562 * 4 3 2 37 37 H 1.09007 * 109.46639 * 65.03319 * 7 6 5 38 38 H 1.08998 * 109.47267 * 185.02803 * 7 6 5 39 39 H 0.97000 * 120.00331 * 359.97438 * 10 8 7 40 40 H 1.08995 * 109.47137 * 300.00211 * 13 11 10 41 41 H 1.09006 * 109.46863 * 59.99945 * 13 11 10 42 42 H 1.08998 * 109.46899 * 179.97438 * 13 11 10 43 43 H 1.08997 * 109.46393 * 301.33555 * 16 14 11 44 44 H 1.09001 * 109.45895 * 61.30849 * 16 14 11 45 45 H 1.08995 * 109.49596 * 58.58466 * 17 16 14 46 46 H 1.08998 * 109.50103 * 178.65509 * 17 16 14 47 47 H 1.08998 * 109.58469 * 174.41614 * 18 17 16 48 48 H 1.08991 * 109.59103 * 294.85180 * 18 17 16 49 49 H 0.97008 * 119.99638 * 180.02562 * 23 22 20 50 50 H 1.08992 * 109.58721 * 293.82557 * 28 19 18 51 51 H 1.09000 * 109.58230 * 173.39594 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2167 2.2070 -1.0776 5 7 2.6708 3.3951 -0.6516 6 6 2.7828 3.3720 0.6483 7 6 3.2661 4.5111 1.5086 8 6 4.6211 4.9635 1.0285 9 8 5.1431 4.4146 0.0814 10 7 5.2526 5.9780 1.6517 11 6 6.5701 6.4174 1.1853 12 1 7.1358 5.5559 0.8305 13 6 6.3982 7.4204 0.0427 14 6 7.3237 7.0825 2.3388 15 1 7.4454 6.3687 3.1534 16 6 8.6998 7.5424 1.8521 17 6 9.4673 8.1784 3.0134 18 6 8.6986 9.4038 3.5179 19 7 7.3269 8.9969 3.8520 20 6 6.8002 9.2667 5.0869 21 1 6.0311 8.6290 5.4970 22 6 7.2550 10.3599 5.8116 23 7 7.9208 11.3201 5.2058 24 14 6.9219 10.4680 7.6465 25 1 6.1595 9.2707 8.0825 26 1 8.2112 10.5290 8.3808 27 1 6.1299 11.6907 7.9346 28 6 6.5307 8.2954 2.8356 29 7 2.3946 2.1582 1.0949 30 1 2.3762 1.8637 2.0189 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0292 1.9305 -2.1046 37 1 2.5617 5.3404 1.4426 38 1 3.3399 4.1785 2.5439 39 1 4.8349 6.4172 2.4090 40 1 5.8613 6.9466 -0.7790 41 1 5.8324 8.2819 0.3976 42 1 7.3784 7.7477 -0.3040 43 1 9.2570 6.6847 1.4752 44 1 8.5767 8.2746 1.0541 45 1 9.5691 7.4545 3.8219 46 1 10.4562 8.4841 2.6720 47 1 9.1883 9.8018 4.4066 48 1 8.6742 10.1659 2.7392 49 1 8.2389 12.0838 5.7124 50 1 6.3296 8.9672 2.0013 51 1 5.5901 7.9623 3.2742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317202056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:23 Heat of formation + Delta-G solvation = 1.127727 kcal Electronic energy + Delta-G solvation = -28955.057565 eV Core-core repulsion = 25082.204490 eV Total energy + Delta-G solvation = -3872.853076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -43.07690 -40.94216 -39.40874 -36.63208 -35.06651 -34.64802 -33.50387 -32.84281 -32.26404 -31.56826 -29.47319 -27.95109 -27.18037 -25.25871 -24.23836 -23.87254 -22.69446 -21.89902 -21.61152 -20.91671 -20.03309 -18.70347 -18.34849 -17.99743 -16.89000 -16.80291 -16.37901 -15.99758 -15.85170 -15.57723 -15.36569 -15.10055 -15.04949 -14.70482 -14.64912 -14.44738 -14.14803 -13.95723 -13.86567 -13.71274 -13.29094 -13.20822 -13.02359 -13.00222 -12.76513 -12.65883 -12.43302 -12.23643 -12.01987 -12.01516 -11.90916 -11.67186 -11.47598 -11.23066 -11.04242 -10.94694 -10.84742 -10.74103 -10.49728 -9.99262 -9.15976 -8.62768 -7.83386 -5.27897 1.03561 1.47789 1.50382 1.59818 1.73144 1.93638 2.20737 2.52559 2.54105 3.31393 3.37577 3.61962 3.89987 3.93835 4.02492 4.02713 4.08682 4.10195 4.17733 4.36486 4.40750 4.46035 4.46783 4.50899 4.59444 4.69257 4.73093 4.73661 4.77678 4.87977 4.93398 4.97019 5.01611 5.07301 5.07713 5.17361 5.24486 5.32008 5.36128 5.37506 5.42209 5.51447 5.58741 5.63526 5.71545 5.81830 5.83125 6.42545 6.50466 6.66216 7.18410 7.20943 7.35284 7.90747 8.42602 9.22848 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002253 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.690529 B =12422.555395 C =13546.999762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.009 4.009 4 C -0.060 4.060 5 N -0.508 5.508 6 C 0.205 3.795 7 C -0.052 4.052 8 C 0.516 3.484 9 O -0.567 6.567 10 N -0.716 5.716 11 C 0.163 3.837 12 H 0.074 0.926 13 C -0.159 4.159 14 C -0.095 4.095 15 H 0.068 0.932 16 C -0.099 4.099 17 C -0.131 4.131 18 C 0.174 3.826 19 N -0.609 5.609 20 C -0.255 4.255 21 H 0.072 0.928 22 C -0.055 4.055 23 N -0.936 5.936 24 Si 0.964 3.036 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.151 3.849 29 N -0.552 5.552 30 H 0.432 0.568 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.172 0.828 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.411 0.589 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.050 0.950 48 H -0.006 1.006 49 H 0.247 0.753 50 H 0.020 0.980 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 -21.337 -6.873 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.126 4.126 4 C -0.208 4.208 5 N -0.227 5.227 6 C -0.059 4.059 7 C -0.093 4.093 8 C 0.302 3.698 9 O -0.445 6.445 10 N -0.369 5.369 11 C 0.057 3.943 12 H 0.092 0.908 13 C -0.217 4.217 14 C -0.116 4.116 15 H 0.086 0.914 16 C -0.137 4.137 17 C -0.170 4.170 18 C 0.049 3.951 19 N -0.332 5.332 20 C -0.385 4.385 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.583 5.583 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.223 1.223 28 C 0.025 3.975 29 N -0.157 5.157 30 H 0.273 0.727 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.190 0.810 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.248 0.752 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.012 0.988 49 H 0.057 0.943 50 H 0.038 0.962 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.286 -20.914 -8.017 25.081 hybrid contribution -0.180 0.267 1.988 2.014 sum -11.467 -20.647 -6.029 24.375 Atomic orbital electron populations 1.21743 0.93701 1.02809 1.01894 1.20107 0.96473 0.87013 1.04632 1.21673 1.07031 0.97294 0.86616 1.22408 1.07700 0.90786 0.99883 1.70156 1.18068 1.24733 1.09724 1.22524 1.04433 0.88107 0.90845 1.20062 0.94051 0.95617 0.99539 1.20644 0.87329 0.79354 0.82458 1.90736 1.67972 1.56940 1.28838 1.46073 1.20028 1.35475 1.35299 1.20745 0.83332 0.96454 0.93725 0.90832 1.22192 1.02616 0.99106 0.97755 1.21712 0.95904 0.97516 0.96425 0.91387 1.21435 0.94748 1.00181 0.97379 1.22012 0.98570 0.98450 0.97977 1.20601 0.84852 0.92428 0.97263 1.44301 1.10481 1.66887 1.11508 1.19568 1.19828 1.05829 0.93279 0.90991 1.25782 1.01750 0.94957 1.02524 1.70206 1.43425 1.09224 1.35399 0.85258 0.76974 0.77509 0.81017 1.18685 1.22195 1.22273 1.21109 0.93524 0.91895 0.90950 1.43042 1.50590 1.11576 1.10492 0.72738 0.92877 0.90376 0.93171 0.88605 0.89672 0.81048 0.84395 0.83613 0.75178 0.93583 0.92112 0.90927 0.91018 0.91945 0.93176 0.91491 0.93164 0.98758 0.94341 0.96193 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.04 -0.43 6.49 29.85 0.19 -0.23 16 3 C -0.01 -0.17 6.49 40.95 0.27 0.10 16 4 C -0.06 -1.45 11.79 83.52 0.98 -0.47 16 5 N -0.51 -15.07 10.58 -188.13 -1.99 -17.06 16 6 C 0.21 4.69 6.96 138.13 0.96 5.65 16 7 C -0.05 -0.89 6.33 29.10 0.18 -0.71 16 8 C 0.52 13.30 7.78 87.66 0.68 13.98 16 9 O -0.57 -20.09 15.21 -3.02 -0.05 -20.13 16 10 N -0.72 -17.07 5.00 -442.53 -2.21 -19.29 16 11 C 0.16 4.46 2.41 44.99 0.11 4.57 16 12 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.16 -4.40 8.79 71.98 0.63 -3.77 16 14 C -0.09 -2.91 2.33 -10.72 -0.02 -2.93 16 15 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.10 -3.06 4.77 30.62 0.15 -2.91 16 17 C -0.13 -4.76 6.08 30.67 0.19 -4.57 16 18 C 0.17 8.22 5.31 86.36 0.46 8.68 16 19 N -0.61 -28.95 3.00 -699.09 -2.09 -31.04 16 20 C -0.25 -13.31 9.59 84.03 0.81 -12.51 16 21 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 22 C -0.06 -3.00 4.91 84.86 0.42 -2.58 16 23 N -0.94 -54.66 11.19 21.65 0.24 -54.42 16 24 Si 0.96 43.64 29.59 68.60 2.03 45.67 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 28 C 0.15 5.59 5.30 86.36 0.46 6.05 16 29 N -0.55 -9.03 6.15 -174.61 -1.07 -10.11 16 30 H 0.43 3.79 8.96 -92.71 -0.83 2.96 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.41 8.29 6.98 -92.71 -0.65 7.64 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.72 6.32 -2.38 -0.02 1.71 16 42 H 0.07 1.91 6.46 -2.39 -0.02 1.89 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.06 1.92 6.50 -2.39 -0.02 1.90 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 2.72 6.04 -2.39 -0.01 2.70 16 48 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.25 14.06 8.31 -92.70 -0.77 13.28 16 50 H 0.02 0.78 6.18 -2.39 -0.01 0.77 16 51 H 0.06 2.03 6.52 -2.39 -0.02 2.02 16 Total: -1.00 -76.97 398.88 1.49 -75.48 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.54 Total: 23.05 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.17 Total: 7.86 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -7.13 Total: -131.92 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.97 1.49 -75.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317202056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.603 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds