Wall clock time and date at job start Tue Mar 31 2020 17:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47192 * 2 1 4 4 N 1.30448 * 125.98932 * 269.96001 * 3 2 1 5 5 N 1.39930 * 108.89723 * 180.02562 * 4 3 2 6 6 C 1.46508 * 125.75315 * 179.97438 * 5 4 3 7 7 C 1.34258 * 108.49473 * 359.75136 * 5 4 3 8 8 C 1.38047 * 107.41581 * 0.39281 * 7 5 4 9 9 C 1.47428 * 126.41756 * 179.87784 * 8 7 5 10 10 O 1.21603 * 120.00139 * 179.69004 * 9 8 7 11 11 N 1.34780 * 119.99750 * 359.68333 * 9 8 7 12 12 C 1.46497 * 119.99942 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46920 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47203 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47628 * 177.30562 * 14 13 12 16 16 H 1.09004 * 109.86524 * 306.77085 * 15 14 13 17 17 C 1.54320 * 109.88549 * 185.75515 * 15 14 13 18 18 C 1.55151 * 102.94304 * 218.38958 * 17 15 14 19 19 C 1.54910 * 101.58325 * 35.49662 * 18 17 15 20 20 N 1.47019 * 109.88389 * 67.77954 * 15 14 13 21 21 C 1.36930 * 125.65287 * 298.32006 * 20 15 14 22 22 H 1.08000 * 120.00219 * 343.49388 * 21 20 15 23 23 C 1.38815 * 120.00288 * 163.48982 * 21 20 15 24 24 N 1.31618 * 119.99701 * 161.44950 * 23 21 20 25 25 Si 1.86796 * 119.99820 * 341.45460 * 23 21 20 26 26 H 1.48502 * 109.46984 * 84.79809 * 25 23 21 27 27 H 1.48508 * 109.46932 * 204.79332 * 25 23 21 28 28 H 1.48494 * 109.47288 * 324.79402 * 25 23 21 29 29 H 1.09007 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47303 * 300.00210 * 1 2 3 31 31 H 1.08997 * 109.47467 * 60.00332 * 1 2 3 32 32 H 1.08997 * 109.47129 * 239.99802 * 2 1 3 33 33 H 1.09006 * 109.47303 * 119.99943 * 2 1 3 34 34 H 1.08996 * 109.46695 * 90.02144 * 6 5 4 35 35 H 1.08993 * 109.47098 * 210.02444 * 6 5 4 36 36 H 1.09006 * 109.46905 * 330.02650 * 6 5 4 37 37 H 1.08000 * 126.29360 * 180.24561 * 7 5 4 38 38 H 0.96998 * 119.99542 * 0.02562 * 11 9 8 39 39 H 1.08991 * 109.47541 * 59.99477 * 12 11 9 40 40 H 1.09002 * 109.46292 * 299.99631 * 12 11 9 41 41 H 1.08998 * 109.47025 * 299.99635 * 13 12 11 42 42 H 1.09000 * 109.47303 * 59.99853 * 13 12 11 43 43 H 1.09006 * 109.46861 * 297.30418 * 14 13 12 44 44 H 1.09000 * 109.47027 * 57.29933 * 14 13 12 45 45 H 1.09008 * 110.71877 * 336.75129 * 17 15 14 46 46 H 1.09002 * 110.72087 * 100.02221 * 17 15 14 47 47 H 1.08999 * 111.00952 * 153.57782 * 18 17 15 48 48 H 1.09004 * 111.00149 * 277.38787 * 18 17 15 49 49 H 1.08998 * 110.36577 * 81.83552 * 19 18 17 50 50 H 1.09002 * 110.36587 * 204.15255 * 19 18 17 51 51 H 0.97006 * 119.99461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1433 -1.0555 5 7 2.7347 3.4042 -0.6442 6 6 3.1252 4.5046 -1.5291 7 6 2.7399 3.4372 0.6979 8 6 2.3089 2.2036 1.1433 9 6 2.1590 1.7839 2.5486 10 8 1.7622 0.6645 2.8098 11 7 2.4619 2.6408 3.5438 12 6 2.3136 2.2235 4.9402 13 6 2.7200 3.3747 5.8624 14 6 2.5645 2.9392 7.3208 15 6 3.0344 4.0663 8.2426 16 1 4.0420 4.3760 7.9652 17 6 3.0179 3.5862 9.7092 18 6 2.5196 4.8377 10.4789 19 6 1.5094 5.4409 9.4713 20 7 2.1150 5.2093 8.1437 21 6 1.8636 5.9356 7.0105 22 1 2.5353 5.8705 6.1672 23 6 0.7454 6.7556 6.9453 24 7 0.6832 7.7132 6.0445 25 14 -0.6708 6.5000 8.1362 26 1 -0.3876 7.2197 9.4039 27 1 -1.9230 7.0273 7.5367 28 1 -0.8278 5.0498 8.4147 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2533 5.1207 -1.7491 35 1 3.8855 5.1126 -1.0390 36 1 3.5271 4.0990 -2.4576 37 1 3.0303 4.2741 1.3157 38 1 2.7782 3.5338 3.3353 39 1 2.9522 1.3613 5.1316 40 1 1.2744 1.9554 5.1307 41 1 3.7591 3.6433 5.6719 42 1 2.0810 4.2367 5.6709 43 1 1.5169 2.7167 7.5238 44 1 3.1664 2.0483 7.5001 45 1 2.3245 2.7546 9.8350 46 1 4.0199 3.3068 10.0347 47 1 2.0236 4.5538 11.4071 48 1 3.3395 5.5295 10.6725 49 1 0.5490 4.9308 9.5458 50 1 1.3873 6.5092 9.6500 51 1 -0.0980 8.2864 5.9992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317425413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:17 Heat of formation + Delta-G solvation = 51.227040 kcal Electronic energy + Delta-G solvation = -29076.247587 eV Core-core repulsion = 25205.566981 eV Total energy + Delta-G solvation = -3870.680606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.50543 -38.97540 -38.14649 -35.35569 -34.59541 -32.69438 -32.59587 -31.78642 -30.48047 -29.92465 -28.37409 -27.01191 -24.99180 -24.20987 -23.47241 -22.30376 -21.59647 -20.52809 -20.22502 -19.46521 -19.16355 -17.62744 -16.82854 -16.02181 -15.96022 -15.79593 -15.38998 -15.05073 -14.98572 -14.66953 -14.21736 -13.96826 -13.67336 -13.31976 -13.18549 -13.04224 -12.97067 -12.82978 -12.78670 -12.39805 -12.08268 -12.04911 -11.89310 -11.50849 -11.33410 -11.17047 -11.15123 -10.97287 -10.82183 -10.77207 -10.43392 -10.28689 -10.08651 -9.87192 -9.71595 -9.54489 -9.46936 -9.22095 -8.89705 -8.72784 -8.57181 -7.03976 -5.95352 -3.24547 1.44047 2.14126 2.20926 3.33525 3.47527 3.48569 3.51601 3.61835 4.19729 4.50518 4.53348 4.72875 4.86044 4.93949 5.05323 5.11892 5.19301 5.22981 5.28579 5.34074 5.35461 5.41297 5.53500 5.56531 5.60474 5.63729 5.67184 5.86436 5.94188 5.98646 6.06977 6.13209 6.14341 6.20315 6.26191 6.26740 6.34144 6.44423 6.46484 6.48928 6.61200 6.65559 6.71429 6.80032 6.81234 7.05338 7.12763 7.48238 7.70651 7.82649 8.28316 8.51921 8.80836 9.68233 10.20074 11.20419 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.002764 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.247634 B =10128.030586 C =10963.789279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C 0.135 3.865 4 N -0.305 5.305 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.102 3.898 8 C -0.285 4.285 9 C 0.591 3.409 10 O -0.548 6.548 11 N -0.723 5.723 12 C 0.125 3.875 13 C -0.143 4.143 14 C -0.116 4.116 15 C 0.162 3.838 16 H 0.042 0.958 17 C -0.127 4.127 18 C -0.132 4.132 19 C 0.101 3.899 20 N -0.605 5.605 21 C -0.232 4.232 22 H 0.099 0.901 23 C 0.017 3.983 24 N -0.915 5.915 25 Si 0.887 3.113 26 H -0.288 1.288 27 H -0.307 1.307 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.185 0.815 38 H 0.398 0.602 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.030 0.970 50 H 0.057 0.943 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -9.036 -8.815 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.033 4.033 4 N -0.126 5.126 5 N -0.141 5.141 6 C -0.044 4.044 7 C -0.050 4.050 8 C -0.300 4.300 9 C 0.379 3.621 10 O -0.427 6.427 11 N -0.373 5.373 12 C 0.001 3.999 13 C -0.180 4.180 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.060 0.940 17 C -0.165 4.165 18 C -0.170 4.170 19 C -0.024 4.024 20 N -0.331 5.331 21 C -0.359 4.359 22 H 0.116 0.884 23 C -0.181 4.181 24 N -0.560 5.560 25 Si 0.719 3.281 26 H -0.216 1.216 27 H -0.235 1.235 28 H -0.200 1.200 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.202 0.798 38 H 0.232 0.768 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.047 0.953 50 H 0.076 0.924 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.959 -9.471 -10.163 15.116 hybrid contribution -0.749 0.714 1.358 1.708 sum 5.210 -8.756 -8.805 13.466 Atomic orbital electron populations 1.21616 0.94046 1.01938 1.02058 1.20097 0.96484 0.88082 1.03887 1.22446 0.95231 0.96865 0.88771 1.77151 1.22208 0.90498 1.22711 1.48288 1.49465 1.11532 1.04797 1.21997 1.01606 0.86183 0.94614 1.23189 0.97680 0.98843 0.85259 1.20310 1.19628 0.95408 0.94698 1.17226 0.76880 0.84579 0.83458 1.90711 1.47310 1.20302 1.84337 1.45904 1.68079 1.16849 1.06517 1.21436 1.01328 0.97852 0.79244 1.22151 1.02414 0.99254 0.94196 1.21881 1.01167 0.97779 0.94749 1.20980 0.93980 0.87321 0.92245 0.94046 1.22608 1.00480 0.97570 0.95873 1.22706 0.99453 0.97394 0.97451 1.22123 0.95061 0.99193 0.86026 1.44946 1.50045 1.32763 1.05358 1.18639 1.06261 1.18133 0.92872 0.88383 1.24917 0.98096 0.97656 0.97387 1.69782 1.30091 1.18782 1.37361 0.87000 0.82886 0.78019 0.80181 1.21557 1.23503 1.19984 0.91994 0.92051 0.93087 0.90883 0.88093 0.90178 0.88909 0.89000 0.79762 0.76764 0.92442 0.91892 0.92590 0.86991 0.92199 0.93367 0.91690 0.91777 0.91975 0.91473 0.95280 0.92441 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 37.15 0.37 -1.26 16 2 C -0.05 -0.58 5.97 -27.89 -0.17 -0.74 16 3 C 0.13 1.89 6.52 -82.02 -0.53 1.36 16 4 N -0.30 -4.15 12.50 33.90 0.42 -3.73 16 5 N -0.36 -4.03 3.98 -67.59 -0.27 -4.30 16 6 C 0.10 0.62 11.44 59.85 0.68 1.30 16 7 C 0.10 1.15 10.99 -16.56 -0.18 0.97 16 8 C -0.29 -4.02 6.13 -105.06 -0.64 -4.66 16 9 C 0.59 9.35 7.81 -12.52 -0.10 9.25 16 10 O -0.55 -10.03 14.92 5.27 0.08 -9.96 16 11 N -0.72 -10.54 5.54 -61.39 -0.34 -10.88 16 12 C 0.12 1.94 5.67 -4.04 -0.02 1.91 16 13 C -0.14 -2.36 4.64 -26.73 -0.12 -2.48 16 14 C -0.12 -1.93 4.72 -26.73 -0.13 -2.05 16 15 C 0.16 2.93 3.22 -66.96 -0.22 2.72 16 16 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.13 -1.95 6.48 -24.90 -0.16 -2.11 16 18 C -0.13 -2.15 7.08 -24.59 -0.17 -2.33 16 19 C 0.10 2.13 4.67 -2.35 -0.01 2.11 16 20 N -0.61 -13.56 2.99 -162.32 -0.48 -14.05 16 21 C -0.23 -5.98 8.39 -15.06 -0.13 -6.11 16 22 H 0.10 2.60 6.63 -52.49 -0.35 2.25 16 23 C 0.02 0.48 5.47 -17.43 -0.10 0.38 16 24 N -0.92 -26.83 13.97 55.49 0.78 -26.06 16 25 Si 0.89 22.24 24.24 -169.99 -4.12 18.12 16 26 H -0.29 -7.04 6.43 56.52 0.36 -6.68 16 27 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 28 H -0.27 -6.77 6.20 56.52 0.35 -6.42 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.37 6.56 -51.93 -0.34 1.03 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.19 1.48 7.46 -52.49 -0.39 1.09 16 38 H 0.40 5.04 7.40 -40.82 -0.30 4.74 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 2.25 4.92 -51.93 -0.26 2.00 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.95 7.85 -51.92 -0.41 0.54 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.03 0.65 5.44 -51.93 -0.28 0.37 16 50 H 0.06 1.31 6.13 -51.93 -0.32 0.99 16 51 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -33.40 397.95 -8.20 -41.60 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.63 Total: 4.98 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.63 Total: -1.74 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.10 Total: -59.02 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.12 Total: 18.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.40 -8.20 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317425413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.832 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds