Wall clock time and date at job start Tue Mar 31 2020 17:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47192 * 2 1 4 4 N 1.30448 * 125.98932 * 269.96001 * 3 2 1 5 5 N 1.39930 * 108.89723 * 180.02562 * 4 3 2 6 6 C 1.46508 * 125.75315 * 179.97438 * 5 4 3 7 7 C 1.34258 * 108.49473 * 359.75136 * 5 4 3 8 8 C 1.38047 * 107.41581 * 0.39281 * 7 5 4 9 9 C 1.47428 * 126.41756 * 179.87784 * 8 7 5 10 10 O 1.21603 * 120.00139 * 179.69004 * 9 8 7 11 11 N 1.34780 * 119.99750 * 359.68333 * 9 8 7 12 12 C 1.46497 * 119.99942 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46920 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47203 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47628 * 177.30562 * 14 13 12 16 16 H 1.09004 * 109.86524 * 306.77085 * 15 14 13 17 17 C 1.54320 * 109.88549 * 185.75515 * 15 14 13 18 18 C 1.55151 * 102.94304 * 218.38958 * 17 15 14 19 19 C 1.54910 * 101.58325 * 35.49662 * 18 17 15 20 20 N 1.47019 * 109.88389 * 67.77954 * 15 14 13 21 21 C 1.36930 * 125.65287 * 298.32006 * 20 15 14 22 22 H 1.08000 * 120.00219 * 343.49388 * 21 20 15 23 23 C 1.38815 * 120.00288 * 163.48982 * 21 20 15 24 24 N 1.31618 * 119.99701 * 161.44950 * 23 21 20 25 25 Si 1.86796 * 119.99820 * 341.45460 * 23 21 20 26 26 H 1.48502 * 109.46984 * 84.79809 * 25 23 21 27 27 H 1.48508 * 109.46932 * 204.79332 * 25 23 21 28 28 H 1.48494 * 109.47288 * 324.79402 * 25 23 21 29 29 H 1.09007 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47303 * 300.00210 * 1 2 3 31 31 H 1.08997 * 109.47467 * 60.00332 * 1 2 3 32 32 H 1.08997 * 109.47129 * 239.99802 * 2 1 3 33 33 H 1.09006 * 109.47303 * 119.99943 * 2 1 3 34 34 H 1.08996 * 109.46695 * 90.02144 * 6 5 4 35 35 H 1.08993 * 109.47098 * 210.02444 * 6 5 4 36 36 H 1.09006 * 109.46905 * 330.02650 * 6 5 4 37 37 H 1.08000 * 126.29360 * 180.24561 * 7 5 4 38 38 H 0.96998 * 119.99542 * 0.02562 * 11 9 8 39 39 H 1.08991 * 109.47541 * 59.99477 * 12 11 9 40 40 H 1.09002 * 109.46292 * 299.99631 * 12 11 9 41 41 H 1.08998 * 109.47025 * 299.99635 * 13 12 11 42 42 H 1.09000 * 109.47303 * 59.99853 * 13 12 11 43 43 H 1.09006 * 109.46861 * 297.30418 * 14 13 12 44 44 H 1.09000 * 109.47027 * 57.29933 * 14 13 12 45 45 H 1.09008 * 110.71877 * 336.75129 * 17 15 14 46 46 H 1.09002 * 110.72087 * 100.02221 * 17 15 14 47 47 H 1.08999 * 111.00952 * 153.57782 * 18 17 15 48 48 H 1.09004 * 111.00149 * 277.38787 * 18 17 15 49 49 H 1.08998 * 110.36577 * 81.83552 * 19 18 17 50 50 H 1.09002 * 110.36587 * 204.15255 * 19 18 17 51 51 H 0.97006 * 119.99461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1433 -1.0555 5 7 2.7347 3.4042 -0.6442 6 6 3.1252 4.5046 -1.5291 7 6 2.7399 3.4372 0.6979 8 6 2.3089 2.2036 1.1433 9 6 2.1590 1.7839 2.5486 10 8 1.7622 0.6645 2.8098 11 7 2.4619 2.6408 3.5438 12 6 2.3136 2.2235 4.9402 13 6 2.7200 3.3747 5.8624 14 6 2.5645 2.9392 7.3208 15 6 3.0344 4.0663 8.2426 16 1 4.0420 4.3760 7.9652 17 6 3.0179 3.5862 9.7092 18 6 2.5196 4.8377 10.4789 19 6 1.5094 5.4409 9.4713 20 7 2.1150 5.2093 8.1437 21 6 1.8636 5.9356 7.0105 22 1 2.5353 5.8705 6.1672 23 6 0.7454 6.7556 6.9453 24 7 0.6832 7.7132 6.0445 25 14 -0.6708 6.5000 8.1362 26 1 -0.3876 7.2197 9.4039 27 1 -1.9230 7.0273 7.5367 28 1 -0.8278 5.0498 8.4147 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2533 5.1207 -1.7491 35 1 3.8855 5.1126 -1.0390 36 1 3.5271 4.0990 -2.4576 37 1 3.0303 4.2741 1.3157 38 1 2.7782 3.5338 3.3353 39 1 2.9522 1.3613 5.1316 40 1 1.2744 1.9554 5.1307 41 1 3.7591 3.6433 5.6719 42 1 2.0810 4.2367 5.6709 43 1 1.5169 2.7167 7.5238 44 1 3.1664 2.0483 7.5001 45 1 2.3245 2.7546 9.8350 46 1 4.0199 3.3068 10.0347 47 1 2.0236 4.5538 11.4071 48 1 3.3395 5.5295 10.6725 49 1 0.5490 4.9308 9.5458 50 1 1.3873 6.5092 9.6500 51 1 -0.0980 8.2864 5.9992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317425413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:14 Heat of formation + Delta-G solvation = 28.790712 kcal Electronic energy + Delta-G solvation = -29077.220499 eV Core-core repulsion = 25205.566981 eV Total energy + Delta-G solvation = -3871.653518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -42.46394 -40.22257 -39.64471 -36.59980 -35.58165 -34.55336 -33.94844 -32.68098 -31.70277 -31.52979 -29.69367 -27.83217 -26.47603 -25.78693 -24.56413 -23.35965 -23.03464 -21.86775 -21.33283 -20.69603 -20.48630 -18.83802 -18.52186 -17.44841 -17.09573 -16.93441 -16.75777 -16.45763 -16.20056 -15.64611 -15.30134 -15.18358 -14.96505 -14.85963 -14.74747 -14.31887 -14.07729 -13.85769 -13.77669 -13.58793 -13.49580 -13.35597 -13.09778 -12.91022 -12.70933 -12.55979 -12.46534 -12.38414 -12.12940 -12.05596 -11.79435 -11.77691 -11.51705 -11.38494 -11.32025 -11.03712 -10.77848 -10.68944 -10.41332 -10.09727 -9.61195 -8.93114 -8.06201 -5.28797 0.49496 1.07835 1.31130 1.41203 1.43518 1.46000 2.33698 2.45867 2.47967 3.18251 3.33610 3.39285 3.67286 3.89998 3.98416 3.99380 4.12207 4.20918 4.23543 4.26390 4.29934 4.38379 4.42745 4.45125 4.50949 4.57155 4.62547 4.68772 4.69075 4.73183 4.82870 4.86135 4.90911 5.00974 5.01363 5.04714 5.15277 5.20069 5.22658 5.27854 5.31484 5.42036 5.47103 5.52986 5.66341 5.67889 5.84966 5.86741 6.21911 6.48934 6.68608 6.87734 7.32322 7.67345 8.25710 9.12870 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.002764 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.247634 B =10128.030586 C =10963.789279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 C 0.120 3.880 4 N -0.324 5.324 5 N -0.358 5.358 6 C 0.086 3.914 7 C 0.117 3.883 8 C -0.318 4.318 9 C 0.590 3.410 10 O -0.580 6.580 11 N -0.718 5.718 12 C 0.134 3.866 13 C -0.129 4.129 14 C -0.112 4.112 15 C 0.151 3.849 16 H 0.045 0.955 17 C -0.118 4.118 18 C -0.121 4.121 19 C 0.089 3.911 20 N -0.622 5.622 21 C -0.198 4.198 22 H 0.086 0.914 23 C -0.042 4.042 24 N -0.960 5.960 25 Si 0.933 3.067 26 H -0.281 1.281 27 H -0.322 1.322 28 H -0.271 1.271 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.217 0.783 38 H 0.408 0.592 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.020 0.980 50 H 0.034 0.966 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 -9.946 -7.954 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.047 4.047 4 N -0.146 5.146 5 N -0.135 5.135 6 C -0.053 4.053 7 C -0.036 4.036 8 C -0.333 4.333 9 C 0.378 3.622 10 O -0.462 6.462 11 N -0.369 5.369 12 C 0.011 3.989 13 C -0.167 4.167 14 C -0.151 4.151 15 C 0.046 3.954 16 H 0.062 0.938 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.035 4.035 20 N -0.348 5.348 21 C -0.327 4.327 22 H 0.104 0.896 23 C -0.235 4.235 24 N -0.609 5.609 25 Si 0.765 3.235 26 H -0.208 1.208 27 H -0.252 1.252 28 H -0.196 1.196 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.234 0.766 38 H 0.243 0.757 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.038 0.962 50 H 0.053 0.947 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.802 -10.398 -9.281 15.972 hybrid contribution -1.189 1.000 1.038 1.869 sum 6.612 -9.398 -8.243 14.142 Atomic orbital electron populations 1.21555 0.93693 1.02802 1.00906 1.20091 0.96748 0.87774 1.03857 1.22676 0.95480 0.97522 0.89000 1.77088 1.22935 0.91734 1.22861 1.48698 1.47974 1.11523 1.05340 1.22425 1.02955 0.85245 0.94705 1.23616 0.95724 0.98584 0.85688 1.20288 1.22246 0.97005 0.93749 1.17501 0.76183 0.84174 0.84296 1.90683 1.48888 1.21665 1.84923 1.45830 1.67842 1.17218 1.06016 1.21257 1.00295 0.97736 0.79641 1.21931 1.02118 0.97935 0.94732 1.21827 1.00648 0.98546 0.94118 1.21269 0.92833 0.86307 0.95008 0.93757 1.22626 1.02748 0.97149 0.93018 1.22676 0.98362 0.97627 0.97250 1.22214 0.96291 0.98163 0.86851 1.45170 1.50417 1.34206 1.04997 1.18715 1.04620 1.16060 0.93261 0.89633 1.25380 1.00299 0.98625 0.99206 1.69882 1.30496 1.20612 1.39931 0.86252 0.80406 0.77855 0.78973 1.20831 1.25166 1.19636 0.90157 0.94483 0.92751 0.89293 0.89577 0.89125 0.86015 0.88147 0.76631 0.75665 0.91437 0.93858 0.91322 0.90851 0.93963 0.89978 0.90618 0.88407 0.89153 0.90771 0.96202 0.94735 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.89 71.98 0.71 -2.42 16 2 C -0.05 -1.15 5.97 29.85 0.18 -0.98 16 3 C 0.12 3.40 6.52 43.52 0.28 3.68 16 4 N -0.32 -8.62 12.50 -46.67 -0.58 -9.21 16 5 N -0.36 -7.37 3.98 -367.76 -1.46 -8.83 16 6 C 0.09 0.88 11.44 127.77 1.46 2.35 16 7 C 0.12 2.48 10.99 84.28 0.93 3.40 16 8 C -0.32 -8.91 6.13 -20.15 -0.12 -9.03 16 9 C 0.59 18.84 7.81 86.66 0.68 19.52 16 10 O -0.58 -21.83 14.92 -4.04 -0.06 -21.89 16 11 N -0.72 -20.76 5.54 -466.38 -2.59 -23.34 16 12 C 0.13 4.11 5.67 86.38 0.49 4.60 16 13 C -0.13 -4.15 4.64 30.59 0.14 -4.01 16 14 C -0.11 -3.47 4.72 30.59 0.14 -3.32 16 15 C 0.15 5.08 3.22 45.34 0.15 5.23 16 16 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 17 C -0.12 -3.07 6.48 31.78 0.21 -2.87 16 18 C -0.12 -3.51 7.08 31.98 0.23 -3.28 16 19 C 0.09 3.63 4.67 86.79 0.41 4.04 16 20 N -0.62 -27.22 2.99 -667.45 -1.99 -29.21 16 21 C -0.20 -10.28 8.39 84.04 0.70 -9.57 16 22 H 0.09 4.60 6.63 -2.91 -0.02 4.58 16 23 C -0.04 -2.37 5.47 84.86 0.46 -1.90 16 24 N -0.96 -58.08 13.97 21.65 0.30 -57.78 16 25 Si 0.93 46.91 24.24 68.60 1.66 48.58 16 26 H -0.28 -13.61 6.43 99.48 0.64 -12.97 16 27 H -0.32 -16.81 7.11 99.48 0.71 -16.11 16 28 H -0.27 -13.22 6.20 99.48 0.62 -12.60 16 29 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.43 6.56 -2.38 -0.02 2.41 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.22 2.95 7.46 -2.91 -0.02 2.93 16 38 H 0.41 10.05 7.40 -92.71 -0.69 9.36 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.97 4.92 -2.39 -0.01 2.96 16 43 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 1.85 7.85 -2.38 -0.02 1.83 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.02 0.86 5.44 -2.39 -0.01 0.85 16 50 H 0.03 1.55 6.13 -2.39 -0.01 1.53 16 51 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -75.24 397.95 2.41 -72.83 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.08 Total: 23.42 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 7.05 Total: 5.43 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -6.32 Total: -128.37 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.66 Total: 48.58 kcal Total: -75.24 2.41 -72.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317425413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.625 kcal (2) G-P(sol) polarization free energy of solvation -75.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds