Wall clock time and date at job start Tue Mar 31 2020 17:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47082 * 2 1 4 4 N 1.30443 * 125.98886 * 270.31910 * 3 2 1 5 5 N 1.39943 * 108.89718 * 180.13104 * 4 3 2 6 6 C 1.46498 * 125.75354 * 179.85246 * 5 4 3 7 7 C 1.34254 * 108.48808 * 359.58593 * 5 4 3 8 8 C 1.38043 * 107.42153 * 0.24584 * 7 5 4 9 9 C 1.47427 * 126.41412 * 180.02562 * 8 7 5 10 10 O 1.21610 * 119.99748 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00366 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47045 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47112 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47126 * 186.09460 * 14 13 12 16 16 H 1.08995 * 109.87507 * 50.47601 * 15 14 13 17 17 C 1.54326 * 109.88382 * 171.65552 * 15 14 13 18 18 C 1.55158 * 102.94348 * 141.60404 * 17 15 14 19 19 C 1.54916 * 101.58227 * 324.49930 * 18 17 15 20 20 N 1.47024 * 109.87850 * 289.46287 * 15 14 13 21 21 C 1.36932 * 125.65049 * 61.60869 * 20 15 14 22 22 H 1.08002 * 119.99727 * 307.12741 * 21 20 15 23 23 C 1.38811 * 120.00270 * 127.13408 * 21 20 15 24 24 N 1.31614 * 120.00239 * 172.04930 * 23 21 20 25 25 Si 1.86798 * 119.99773 * 352.04367 * 23 21 20 26 26 H 1.48499 * 109.47410 * 93.99485 * 25 23 21 27 27 H 1.48510 * 109.47068 * 213.99484 * 25 23 21 28 28 H 1.48502 * 109.47179 * 333.99094 * 25 23 21 29 29 H 1.09005 * 109.47206 * 60.00219 * 1 2 3 30 30 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47430 * 300.00033 * 1 2 3 32 32 H 1.09005 * 109.47276 * 239.99620 * 2 1 3 33 33 H 1.09003 * 109.46675 * 120.00317 * 2 1 3 34 34 H 1.08999 * 109.47277 * 269.69486 * 6 5 4 35 35 H 1.09002 * 109.47254 * 149.69114 * 6 5 4 36 36 H 1.09009 * 109.46789 * 29.69309 * 6 5 4 37 37 H 1.08001 * 126.28607 * 180.21958 * 7 5 4 38 38 H 0.97007 * 119.99654 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.46895 * 299.99584 * 12 11 9 40 40 H 1.08993 * 109.47375 * 59.99521 * 12 11 9 41 41 H 1.09005 * 109.46967 * 299.99580 * 13 12 11 42 42 H 1.09000 * 109.47789 * 59.99532 * 13 12 11 43 43 H 1.08998 * 109.46992 * 306.08763 * 14 13 12 44 44 H 1.08998 * 109.47224 * 66.08823 * 14 13 12 45 45 H 1.08995 * 110.71997 * 259.97156 * 17 15 14 46 46 H 1.09008 * 110.71790 * 23.24438 * 17 15 14 47 47 H 1.09001 * 111.00416 * 206.42525 * 18 17 15 48 48 H 1.08998 * 111.03371 * 82.58855 * 18 17 15 49 49 H 1.08995 * 110.36247 * 278.16928 * 19 18 17 50 50 H 1.08996 * 110.36314 * 155.84640 * 19 18 17 51 51 H 0.97001 * 120.00190 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2822 2.1454 -1.0554 5 7 2.7331 3.4048 -0.6442 6 6 3.1215 4.5059 -1.5290 7 6 2.7442 3.4356 0.6980 8 6 2.3091 2.2035 1.1433 9 6 2.1603 1.7834 2.5486 10 8 1.7644 0.6636 2.8098 11 7 2.4630 2.6403 3.5438 12 6 2.3157 2.2226 4.9402 13 6 2.7229 3.3735 5.8624 14 6 2.5685 2.9375 7.3208 15 6 2.8287 4.1322 8.2406 16 1 2.2330 4.9857 7.9170 17 6 2.4734 3.7615 9.6959 18 6 3.5861 4.4666 10.5158 19 6 4.8070 4.3200 9.5735 20 7 4.2568 4.4809 8.2152 21 6 4.9597 4.8871 7.1125 22 1 4.9405 4.2928 6.2109 23 6 5.6971 6.0624 7.1535 24 7 6.4953 6.3738 6.1544 25 14 5.5563 7.2023 8.6267 26 1 6.6309 6.8862 9.6017 27 1 5.6942 8.6111 8.1775 28 1 4.2319 7.0160 9.2720 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 4.1869 4.4370 -1.7487 35 1 2.9122 5.4568 -1.0390 36 1 2.5542 4.4430 -2.4577 37 1 3.0396 4.2707 1.3157 38 1 2.7792 3.5334 3.3354 39 1 1.2768 1.9536 5.1313 40 1 2.9551 1.3609 5.1311 41 1 3.7619 3.6421 5.6712 42 1 2.0838 4.2357 5.6717 43 1 1.5564 2.5672 7.4841 44 1 3.2849 2.1463 7.5414 45 1 1.4913 4.1507 9.9642 46 1 2.5140 2.6817 9.8397 47 1 3.7589 3.9535 11.4618 48 1 3.3442 5.5164 10.6815 49 1 5.2568 3.3336 9.6863 50 1 5.5412 5.0986 9.7802 51 1 7.0108 7.1949 6.1833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317425414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:32 Heat of formation + Delta-G solvation = 46.359950 kcal Electronic energy + Delta-G solvation = -28924.645903 eV Core-core repulsion = 25053.754244 eV Total energy + Delta-G solvation = -3870.891659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 7.04 seconds Orbital eigenvalues (eV) -41.51037 -38.97566 -38.04397 -35.35672 -34.60273 -32.67143 -32.61459 -31.79231 -30.47199 -29.92362 -28.30245 -27.00950 -24.94584 -24.20730 -23.45790 -22.28774 -21.33842 -20.32930 -20.22084 -19.48917 -19.22970 -17.64351 -16.92044 -16.16669 -16.00949 -15.86380 -15.35231 -15.09977 -14.71941 -14.48058 -14.24971 -14.08579 -13.68661 -13.40083 -13.22270 -13.03860 -12.81880 -12.78827 -12.56244 -12.37787 -12.10669 -12.00425 -11.92417 -11.53184 -11.33065 -11.19797 -11.18148 -10.90209 -10.81571 -10.76690 -10.57692 -10.28648 -9.99577 -9.94820 -9.87003 -9.54166 -9.46940 -9.36146 -8.89589 -8.58359 -8.55321 -6.49392 -6.00747 -3.69743 1.43643 2.13676 2.20465 3.29336 3.40849 3.49285 3.51434 3.60954 4.19316 4.47622 4.50425 4.72352 4.86016 5.04411 5.05311 5.11794 5.15680 5.19784 5.30901 5.35178 5.39382 5.47806 5.52868 5.58659 5.59659 5.63062 5.69858 5.88873 5.92471 6.04820 6.11165 6.13733 6.17724 6.21532 6.23043 6.34027 6.38519 6.46087 6.51183 6.53483 6.64261 6.67931 6.76096 6.83035 6.91382 7.04652 7.12272 7.47760 7.81921 8.06157 8.44832 8.51227 8.84392 9.59952 10.31841 11.07837 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.002674 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.741117 B =10467.883343 C =12122.095738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 C 0.135 3.865 4 N -0.305 5.305 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.102 3.898 8 C -0.286 4.286 9 C 0.591 3.409 10 O -0.548 6.548 11 N -0.724 5.724 12 C 0.123 3.877 13 C -0.141 4.141 14 C -0.112 4.112 15 C 0.155 3.845 16 H 0.040 0.960 17 C -0.126 4.126 18 C -0.139 4.139 19 C 0.119 3.881 20 N -0.602 5.602 21 C -0.254 4.254 22 H 0.086 0.914 23 C 0.043 3.957 24 N -0.906 5.906 25 Si 0.891 3.109 26 H -0.287 1.287 27 H -0.303 1.303 28 H -0.262 1.262 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.186 0.814 38 H 0.399 0.601 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.027 0.973 50 H 0.038 0.962 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -4.662 -9.307 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.033 4.033 4 N -0.126 5.126 5 N -0.141 5.141 6 C -0.044 4.044 7 C -0.050 4.050 8 C -0.301 4.301 9 C 0.379 3.621 10 O -0.427 6.427 11 N -0.374 5.374 12 C 0.000 4.000 13 C -0.179 4.179 14 C -0.152 4.152 15 C 0.049 3.951 16 H 0.057 0.943 17 C -0.164 4.164 18 C -0.177 4.177 19 C -0.005 4.005 20 N -0.329 5.329 21 C -0.382 4.382 22 H 0.103 0.897 23 C -0.158 4.158 24 N -0.546 5.546 25 Si 0.721 3.279 26 H -0.214 1.214 27 H -0.231 1.231 28 H -0.187 1.187 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.203 0.797 38 H 0.233 0.767 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.056 0.944 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.753 -5.125 -10.646 15.321 hybrid contribution 0.433 1.510 1.534 2.196 sum -9.320 -3.615 -9.112 13.526 Atomic orbital electron populations 1.21607 0.94115 1.01915 1.01896 1.20103 0.96405 0.88120 1.04009 1.22438 0.95272 0.96817 0.88773 1.77153 1.22133 0.90565 1.22722 1.48288 1.49317 1.11667 1.04801 1.21999 1.01886 0.85917 0.94613 1.23197 0.97408 0.99096 0.85262 1.20308 1.19631 0.95437 0.94705 1.17226 0.76903 0.84552 0.83458 1.90713 1.47502 1.20133 1.84345 1.45923 1.67999 1.16952 1.06528 1.21470 1.00719 0.98529 0.79273 1.22184 1.05466 0.96010 0.94202 1.21844 0.99533 0.99270 0.94564 1.21116 0.87673 0.94391 0.91906 0.94255 1.22579 0.97785 0.99869 0.96178 1.22794 0.97071 1.00202 0.97644 1.21856 0.94191 0.97914 0.86587 1.44568 1.03531 1.79731 1.05092 1.18611 1.24987 1.02755 0.91865 0.89675 1.25872 0.97144 0.96515 0.96309 1.69766 1.27576 1.25376 1.31880 0.86602 0.78902 0.79417 0.83012 1.21435 1.23070 1.18690 0.93137 0.92002 0.92159 0.90832 0.88036 0.90138 0.88921 0.89014 0.79744 0.76709 0.92410 0.91953 0.87475 0.92276 0.93447 0.92217 0.92106 0.91715 0.92019 0.91870 0.95516 0.94388 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.58 5.97 -27.89 -0.17 -0.75 16 3 C 0.13 1.87 6.52 -82.02 -0.53 1.34 16 4 N -0.30 -4.11 12.50 33.89 0.42 -3.69 16 5 N -0.36 -4.00 3.98 -67.60 -0.27 -4.27 16 6 C 0.10 0.62 11.44 59.85 0.68 1.30 16 7 C 0.10 1.14 10.99 -16.56 -0.18 0.96 16 8 C -0.29 -3.97 6.13 -105.07 -0.64 -4.62 16 9 C 0.59 9.21 7.81 -12.52 -0.10 9.11 16 10 O -0.55 -9.90 14.92 5.27 0.08 -9.82 16 11 N -0.72 -10.40 5.54 -61.38 -0.34 -10.74 16 12 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 13 C -0.14 -2.34 4.86 -26.73 -0.13 -2.47 16 14 C -0.11 -1.86 4.69 -26.73 -0.13 -1.99 16 15 C 0.16 2.91 3.21 -66.95 -0.22 2.69 16 16 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 17 C -0.13 -2.00 6.47 -24.89 -0.16 -2.16 16 18 C -0.14 -2.37 7.09 -24.58 -0.17 -2.54 16 19 C 0.12 2.47 6.19 -2.52 -0.02 2.45 16 20 N -0.60 -13.54 2.38 -162.57 -0.39 -13.92 16 21 C -0.25 -6.57 9.34 -15.06 -0.14 -6.71 16 22 H 0.09 2.31 5.18 -52.49 -0.27 2.03 16 23 C 0.04 1.19 5.50 -17.43 -0.10 1.09 16 24 N -0.91 -26.08 13.97 55.49 0.78 -25.30 16 25 Si 0.89 21.72 25.12 -169.99 -4.27 17.45 16 26 H -0.29 -6.99 7.00 56.52 0.40 -6.59 16 27 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.26 -6.22 6.44 56.52 0.36 -5.85 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.38 6.55 -51.93 -0.34 1.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.19 1.48 7.46 -52.49 -0.39 1.09 16 38 H 0.40 5.03 7.40 -40.82 -0.30 4.72 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 2.12 4.50 -51.93 -0.23 1.89 16 42 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.94 7.85 -51.92 -0.41 0.53 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 1.12 7.54 -51.93 -0.39 0.73 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.04 0.85 4.62 -51.93 -0.24 0.61 16 51 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -32.80 400.37 -8.13 -40.93 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.52 Total: 4.90 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.65 Total: -1.57 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.20 Total: -57.92 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.27 Total: 17.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.80 -8.13 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317425414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.287 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.04 seconds