Wall clock time and date at job start Tue Mar 31 2020 17:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47082 * 2 1 4 4 N 1.30443 * 125.98886 * 270.31910 * 3 2 1 5 5 N 1.39943 * 108.89718 * 180.13104 * 4 3 2 6 6 C 1.46498 * 125.75354 * 179.85246 * 5 4 3 7 7 C 1.34254 * 108.48808 * 359.58593 * 5 4 3 8 8 C 1.38043 * 107.42153 * 0.24584 * 7 5 4 9 9 C 1.47427 * 126.41412 * 180.02562 * 8 7 5 10 10 O 1.21610 * 119.99748 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00366 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47045 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47112 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47126 * 186.09460 * 14 13 12 16 16 H 1.08995 * 109.87507 * 50.47601 * 15 14 13 17 17 C 1.54326 * 109.88382 * 171.65552 * 15 14 13 18 18 C 1.55158 * 102.94348 * 141.60404 * 17 15 14 19 19 C 1.54916 * 101.58227 * 324.49930 * 18 17 15 20 20 N 1.47024 * 109.87850 * 289.46287 * 15 14 13 21 21 C 1.36932 * 125.65049 * 61.60869 * 20 15 14 22 22 H 1.08002 * 119.99727 * 307.12741 * 21 20 15 23 23 C 1.38811 * 120.00270 * 127.13408 * 21 20 15 24 24 N 1.31614 * 120.00239 * 172.04930 * 23 21 20 25 25 Si 1.86798 * 119.99773 * 352.04367 * 23 21 20 26 26 H 1.48499 * 109.47410 * 93.99485 * 25 23 21 27 27 H 1.48510 * 109.47068 * 213.99484 * 25 23 21 28 28 H 1.48502 * 109.47179 * 333.99094 * 25 23 21 29 29 H 1.09005 * 109.47206 * 60.00219 * 1 2 3 30 30 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47430 * 300.00033 * 1 2 3 32 32 H 1.09005 * 109.47276 * 239.99620 * 2 1 3 33 33 H 1.09003 * 109.46675 * 120.00317 * 2 1 3 34 34 H 1.08999 * 109.47277 * 269.69486 * 6 5 4 35 35 H 1.09002 * 109.47254 * 149.69114 * 6 5 4 36 36 H 1.09009 * 109.46789 * 29.69309 * 6 5 4 37 37 H 1.08001 * 126.28607 * 180.21958 * 7 5 4 38 38 H 0.97007 * 119.99654 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.46895 * 299.99584 * 12 11 9 40 40 H 1.08993 * 109.47375 * 59.99521 * 12 11 9 41 41 H 1.09005 * 109.46967 * 299.99580 * 13 12 11 42 42 H 1.09000 * 109.47789 * 59.99532 * 13 12 11 43 43 H 1.08998 * 109.46992 * 306.08763 * 14 13 12 44 44 H 1.08998 * 109.47224 * 66.08823 * 14 13 12 45 45 H 1.08995 * 110.71997 * 259.97156 * 17 15 14 46 46 H 1.09008 * 110.71790 * 23.24438 * 17 15 14 47 47 H 1.09001 * 111.00416 * 206.42525 * 18 17 15 48 48 H 1.08998 * 111.03371 * 82.58855 * 18 17 15 49 49 H 1.08995 * 110.36247 * 278.16928 * 19 18 17 50 50 H 1.08996 * 110.36314 * 155.84640 * 19 18 17 51 51 H 0.97001 * 120.00190 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2822 2.1454 -1.0554 5 7 2.7331 3.4048 -0.6442 6 6 3.1215 4.5059 -1.5290 7 6 2.7442 3.4356 0.6980 8 6 2.3091 2.2035 1.1433 9 6 2.1603 1.7834 2.5486 10 8 1.7644 0.6636 2.8098 11 7 2.4630 2.6403 3.5438 12 6 2.3157 2.2226 4.9402 13 6 2.7229 3.3735 5.8624 14 6 2.5685 2.9375 7.3208 15 6 2.8287 4.1322 8.2406 16 1 2.2330 4.9857 7.9170 17 6 2.4734 3.7615 9.6959 18 6 3.5861 4.4666 10.5158 19 6 4.8070 4.3200 9.5735 20 7 4.2568 4.4809 8.2152 21 6 4.9597 4.8871 7.1125 22 1 4.9405 4.2928 6.2109 23 6 5.6971 6.0624 7.1535 24 7 6.4953 6.3738 6.1544 25 14 5.5563 7.2023 8.6267 26 1 6.6309 6.8862 9.6017 27 1 5.6942 8.6111 8.1775 28 1 4.2319 7.0160 9.2720 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 4.1869 4.4370 -1.7487 35 1 2.9122 5.4568 -1.0390 36 1 2.5542 4.4430 -2.4577 37 1 3.0396 4.2707 1.3157 38 1 2.7792 3.5334 3.3354 39 1 1.2768 1.9536 5.1313 40 1 2.9551 1.3609 5.1311 41 1 3.7619 3.6421 5.6712 42 1 2.0838 4.2357 5.6717 43 1 1.5564 2.5672 7.4841 44 1 3.2849 2.1463 7.5414 45 1 1.4913 4.1507 9.9642 46 1 2.5140 2.6817 9.8397 47 1 3.7589 3.9535 11.4618 48 1 3.3442 5.5164 10.6815 49 1 5.2568 3.3336 9.6863 50 1 5.5412 5.0986 9.7802 51 1 7.0108 7.1949 6.1833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317425414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:23 Heat of formation + Delta-G solvation = 25.385321 kcal Electronic energy + Delta-G solvation = -28925.555431 eV Core-core repulsion = 25053.754244 eV Total energy + Delta-G solvation = -3871.801187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.46111 -40.20520 -39.55107 -36.58881 -35.57444 -34.57651 -33.92739 -32.66742 -31.68633 -31.51046 -29.61957 -27.81865 -26.45050 -25.73048 -24.52010 -23.28677 -22.80274 -21.69947 -21.33671 -20.81530 -20.47581 -18.90528 -18.51079 -17.80593 -17.07542 -16.82295 -16.54744 -16.37351 -16.07845 -15.61824 -15.51531 -15.16558 -14.94445 -14.77664 -14.62803 -14.11171 -14.02566 -13.92096 -13.77893 -13.52939 -13.48807 -13.32165 -13.01541 -12.93566 -12.90219 -12.44780 -12.43032 -12.38907 -12.12758 -12.07809 -11.86496 -11.77049 -11.58615 -11.35087 -11.31678 -11.07460 -10.76709 -10.59380 -10.40925 -10.08828 -9.60807 -8.37911 -8.02055 -5.73859 0.49683 1.08525 1.33975 1.41395 1.43564 1.54635 2.34664 2.46176 2.46853 3.15289 3.33907 3.47672 3.67483 3.94266 4.00159 4.06707 4.14481 4.22054 4.24181 4.27563 4.32441 4.39976 4.41994 4.47109 4.53759 4.62598 4.64544 4.68881 4.70359 4.79783 4.85882 4.88834 4.97396 5.03621 5.03929 5.06872 5.16994 5.22458 5.28188 5.29692 5.34028 5.47064 5.48581 5.55003 5.61437 5.70712 5.86778 6.06643 6.47302 6.50194 6.69016 7.00811 7.32696 7.59895 8.38788 9.03980 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.002674 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.741117 B =10467.883343 C =12122.095738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 C 0.121 3.879 4 N -0.325 5.325 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.117 3.883 8 C -0.318 4.318 9 C 0.590 3.410 10 O -0.580 6.580 11 N -0.719 5.719 12 C 0.134 3.866 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.146 3.854 16 H 0.030 0.970 17 C -0.116 4.116 18 C -0.131 4.131 19 C 0.108 3.892 20 N -0.619 5.619 21 C -0.236 4.236 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.949 5.949 25 Si 0.942 3.058 26 H -0.289 1.289 27 H -0.311 1.311 28 H -0.250 1.250 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.216 0.784 38 H 0.407 0.593 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.018 0.982 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 -4.366 -8.370 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.046 4.046 4 N -0.146 5.146 5 N -0.135 5.135 6 C -0.053 4.053 7 C -0.037 4.037 8 C -0.333 4.333 9 C 0.379 3.621 10 O -0.461 6.461 11 N -0.370 5.370 12 C 0.011 3.989 13 C -0.165 4.165 14 C -0.146 4.146 15 C 0.041 3.959 16 H 0.047 0.953 17 C -0.154 4.154 18 C -0.169 4.169 19 C -0.016 4.016 20 N -0.346 5.346 21 C -0.366 4.366 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.593 5.593 25 Si 0.772 3.228 26 H -0.216 1.216 27 H -0.240 1.240 28 H -0.173 1.173 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.243 0.757 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.075 0.925 49 H 0.048 0.952 50 H 0.036 0.964 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.431 -4.823 -9.707 15.753 hybrid contribution 0.969 1.383 1.177 2.058 sum -10.463 -3.440 -8.530 13.931 Atomic orbital electron populations 1.21541 0.93221 1.02835 1.01117 1.20104 0.97162 0.87700 1.03684 1.22674 0.95490 0.97471 0.88981 1.77091 1.22896 0.91761 1.22879 1.48693 1.47863 1.11666 1.05326 1.22420 1.02719 0.85520 0.94673 1.23608 0.95491 0.98871 0.85689 1.20287 1.22190 0.96991 0.93789 1.17483 0.76227 0.84127 0.84254 1.90685 1.49087 1.21412 1.84912 1.45856 1.67773 1.17284 1.06076 1.21280 1.00697 0.97399 0.79547 1.21961 1.03139 0.96514 0.94905 1.21770 1.00968 0.98092 0.93758 1.21325 0.85067 0.94706 0.94773 0.95250 1.22587 0.98592 1.01028 0.93177 1.22765 0.95285 1.00553 0.98276 1.21997 0.95699 0.97354 0.86578 1.44750 1.05345 1.79661 1.04866 1.18654 1.23764 1.01772 0.92360 0.91623 1.26441 0.97740 0.98162 0.98428 1.69877 1.29454 1.26030 1.33907 0.85770 0.79228 0.77317 0.80520 1.21640 1.23961 1.17349 0.92632 0.90261 0.94020 0.89558 0.89802 0.88986 0.86169 0.88183 0.76741 0.75722 0.91626 0.93327 0.90971 0.91980 0.90371 0.93245 0.89404 0.89911 0.88752 0.92484 0.95184 0.96415 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.89 71.98 0.71 -2.13 16 2 C -0.05 -1.18 5.97 29.84 0.18 -1.01 16 3 C 0.12 3.38 6.52 43.51 0.28 3.66 16 4 N -0.32 -8.57 12.50 -46.68 -0.58 -9.16 16 5 N -0.36 -7.36 3.98 -367.78 -1.46 -8.82 16 6 C 0.09 0.89 11.44 127.77 1.46 2.35 16 7 C 0.12 2.47 10.99 84.28 0.93 3.39 16 8 C -0.32 -8.82 6.13 -20.15 -0.12 -8.95 16 9 C 0.59 18.63 7.81 86.66 0.68 19.31 16 10 O -0.58 -21.49 14.92 -4.06 -0.06 -21.55 16 11 N -0.72 -20.65 5.54 -466.37 -2.59 -23.24 16 12 C 0.13 4.06 5.67 86.38 0.49 4.55 16 13 C -0.13 -4.17 4.86 30.59 0.15 -4.02 16 14 C -0.11 -3.33 4.69 30.59 0.14 -3.19 16 15 C 0.15 5.16 3.21 45.34 0.15 5.31 16 16 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 17 C -0.12 -3.19 6.47 31.78 0.21 -2.98 16 18 C -0.13 -3.97 7.09 31.99 0.23 -3.75 16 19 C 0.11 4.30 6.19 86.86 0.54 4.83 16 20 N -0.62 -27.26 2.38 -668.24 -1.59 -28.85 16 21 C -0.24 -12.37 9.34 84.03 0.79 -11.59 16 22 H 0.07 3.69 5.18 -2.91 -0.02 3.68 16 23 C -0.01 -0.58 5.50 84.86 0.47 -0.12 16 24 N -0.95 -56.16 13.97 21.65 0.30 -55.86 16 25 Si 0.94 45.17 25.12 68.60 1.72 46.90 16 26 H -0.29 -13.78 7.00 99.48 0.70 -13.08 16 27 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 28 H -0.25 -11.27 6.44 99.48 0.64 -10.63 16 29 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 33 H 0.08 2.39 6.55 -2.39 -0.02 2.37 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.22 3.00 7.46 -2.91 -0.02 2.98 16 38 H 0.41 10.15 7.40 -92.70 -0.69 9.46 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.93 4.50 -2.38 -0.01 2.92 16 42 H 0.06 1.97 8.11 -2.39 -0.02 1.95 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.01 7.85 -2.38 -0.02 1.99 16 47 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.06 1.81 7.54 -2.39 -0.02 1.80 16 49 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.02 0.77 4.62 -2.39 -0.01 0.76 16 51 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.04 400.37 3.17 -69.87 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.17 Total: 25.02 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 7.27 Total: 5.69 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -5.92 Total: -125.93 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.72 Total: 46.90 kcal Total: -73.04 3.17 -69.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317425414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.255 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds