Wall clock time and date at job start Tue Mar 31 2020 19:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46786 * 2 1 4 4 C 1.50698 * 109.46877 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.98918 * 269.97544 * 4 3 2 6 6 N 1.39935 * 108.89523 * 179.76817 * 5 4 3 7 7 H 0.97005 * 125.75145 * 180.27231 * 6 5 4 8 8 C 1.34257 * 108.49562 * 0.42828 * 6 5 4 9 9 C 1.38051 * 107.41106 * 359.58122 * 8 6 5 10 10 C 1.47430 * 126.41060 * 180.26211 * 9 8 6 11 11 O 1.21604 * 119.99766 * 179.97438 * 10 9 8 12 12 N 1.34770 * 120.00262 * 359.97438 * 10 9 8 13 13 C 1.46505 * 120.00079 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47099 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46908 * 180.02562 * 14 13 12 16 16 C 1.53042 * 109.46139 * 295.03184 * 15 14 13 17 17 C 1.53192 * 109.31189 * 178.60320 * 16 15 14 18 18 N 1.46930 * 108.76804 * 54.65569 * 17 16 15 19 19 C 1.36934 * 120.63454 * 126.40283 * 18 17 16 20 20 H 1.08000 * 119.99766 * 331.83138 * 19 18 17 21 21 C 1.38807 * 119.99872 * 151.81988 * 19 18 17 22 22 N 1.31614 * 120.00488 * 343.08253 * 21 19 18 23 23 Si 1.86806 * 119.99847 * 163.08253 * 21 19 18 24 24 H 1.48499 * 109.47199 * 60.00025 * 23 21 19 25 25 H 1.48499 * 109.47422 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47231 * 300.00187 * 23 21 19 27 27 C 1.46928 * 118.73432 * 306.38128 * 18 17 16 28 28 C 1.53044 * 109.45899 * 174.97735 * 15 14 13 29 29 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47707 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47038 * 60.00185 * 1 2 3 32 32 H 1.08988 * 109.47258 * 240.00253 * 2 1 3 33 33 H 1.09001 * 109.47038 * 119.99815 * 2 1 3 34 34 H 1.09001 * 109.46711 * 60.00199 * 3 2 1 35 35 H 1.08993 * 109.47269 * 300.00355 * 3 2 1 36 36 H 1.07999 * 126.29699 * 179.84489 * 8 6 5 37 37 H 0.96999 * 120.00393 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47085 * 300.00738 * 13 12 10 39 39 H 1.09005 * 109.46610 * 60.00515 * 13 12 10 40 40 H 1.08993 * 109.47320 * 300.00250 * 14 13 12 41 41 H 1.09007 * 109.46787 * 60.00221 * 14 13 12 42 42 H 1.08993 * 109.46467 * 55.00250 * 15 14 13 43 43 H 1.09003 * 109.49421 * 298.56393 * 16 15 14 44 44 H 1.08993 * 109.50070 * 58.66028 * 16 15 14 45 45 H 1.08994 * 109.59910 * 294.86464 * 17 16 15 46 46 H 1.09002 * 109.70351 * 174.50305 * 17 16 15 47 47 H 0.96997 * 120.00545 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58891 * 293.82157 * 27 18 17 49 49 H 1.08999 * 109.69955 * 173.46688 * 27 18 17 50 50 H 1.08997 * 109.49776 * 301.33593 * 28 15 14 51 51 H 1.08997 * 109.49750 * 61.39971 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3130 1.4432 1.0564 6 7 5.6507 1.4377 0.6457 7 1 6.4236 1.4331 1.2319 8 6 5.6841 1.4431 -0.6965 9 6 4.3776 1.4425 -1.1422 10 6 3.9325 1.4419 -2.5477 11 8 2.7449 1.4409 -2.8094 12 7 4.8417 1.4424 -3.5425 13 6 4.3993 1.4412 -4.9392 14 6 5.6205 1.4415 -5.8610 15 6 5.1586 1.4409 -7.3195 16 6 4.4231 0.1331 -7.6209 17 6 3.9317 0.1509 -9.0718 18 7 5.0754 0.4171 -9.9549 19 6 5.3616 -0.4224 -10.9982 20 1 5.0905 -1.4663 -10.9413 21 6 5.9998 0.0683 -12.1290 22 7 6.0344 1.3645 -12.3549 23 14 6.8098 -1.1110 -13.3301 24 1 5.7897 -2.0449 -13.8709 25 1 7.4179 -0.3417 -14.4453 26 1 7.8662 -1.8839 -12.6288 27 6 5.9059 1.6015 -9.6976 28 6 6.3749 1.5676 -8.2397 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 6.5702 1.4432 -1.3139 37 1 5.7890 1.4428 -3.3339 38 1 3.8007 0.5506 -5.1300 39 1 3.7988 2.3306 -5.1308 40 1 6.2195 2.3319 -5.6703 41 1 6.2207 0.5520 -5.6692 42 1 4.4866 2.2824 -7.4880 43 1 5.1019 -0.7075 -7.4768 44 1 3.5705 0.0320 -6.9494 45 1 3.1846 0.9348 -9.1951 46 1 3.4931 -0.8148 -9.3231 47 1 6.4807 1.7074 -13.1448 48 1 5.3197 2.5038 -9.8720 49 1 6.7714 1.5944 -10.3602 50 1 6.9116 2.4877 -8.0087 51 1 7.0354 0.7136 -8.0892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319027706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:42 Heat of formation + Delta-G solvation = 25.360484 kcal Electronic energy + Delta-G solvation = -28398.875155 eV Core-core repulsion = 24527.072891 eV Total energy + Delta-G solvation = -3871.802264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.78774 -39.30242 -37.92413 -35.68810 -35.12267 -33.53475 -31.92337 -31.50667 -30.66190 -29.85070 -28.36762 -27.33072 -25.22724 -23.60015 -22.84349 -22.19182 -21.87323 -20.82560 -20.49533 -19.78077 -19.05004 -18.68471 -16.74709 -16.61039 -15.74163 -15.70114 -15.32014 -15.05095 -14.79668 -14.69070 -14.13440 -14.01150 -13.70915 -13.58589 -13.45854 -13.29005 -13.22853 -12.78116 -12.51247 -12.25360 -12.14474 -11.76501 -11.54139 -11.46946 -11.31313 -11.28059 -11.18685 -10.85577 -10.80073 -10.67846 -10.43989 -10.18701 -10.13443 -9.95797 -9.86903 -9.80457 -9.43255 -9.35926 -9.25912 -8.95695 -8.42997 -6.61559 -5.75162 -3.17263 1.13177 1.84975 2.29268 3.15633 3.30119 3.39925 3.45387 3.46718 4.09823 4.23294 4.52531 4.71985 4.85050 4.90517 4.98675 5.02556 5.08543 5.12651 5.27857 5.33288 5.41922 5.49656 5.54081 5.62015 5.65476 5.71041 5.77675 5.83505 5.86433 6.05317 6.06972 6.07757 6.12395 6.16502 6.20417 6.26781 6.41164 6.42354 6.60225 6.67416 6.68298 6.74976 6.87561 6.90839 7.06784 7.14466 7.42142 7.46392 7.70225 7.82615 8.20279 8.49533 9.25825 9.89693 10.46988 11.33248 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.001913 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.558935 B =14635.050650 C =15351.064984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.046 4.046 4 C 0.139 3.861 5 N -0.299 5.299 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.103 3.897 9 C -0.284 4.284 10 C 0.589 3.411 11 O -0.537 6.537 12 N -0.729 5.729 13 C 0.119 3.881 14 C -0.125 4.125 15 C -0.075 4.075 16 C -0.129 4.129 17 C 0.144 3.856 18 N -0.593 5.593 19 C -0.250 4.250 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.171 3.829 28 C -0.134 4.134 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.186 0.814 37 H 0.394 0.606 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.051 0.949 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.085 0.915 50 H 0.046 0.954 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 1.400 27.156 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.085 4.085 4 C -0.029 4.029 5 N -0.121 5.121 6 N -0.166 5.166 7 H 0.288 0.712 8 C -0.050 4.050 9 C -0.299 4.299 10 C 0.376 3.624 11 O -0.414 6.414 12 N -0.380 5.380 13 C -0.004 4.004 14 C -0.163 4.163 15 C -0.094 4.094 16 C -0.169 4.169 17 C 0.018 3.982 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.045 3.955 28 C -0.173 4.173 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.203 0.797 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.982 1.489 28.053 28.110 hybrid contribution 1.669 -0.513 -1.156 2.094 sum 0.688 0.975 26.897 26.924 Atomic orbital electron populations 1.21738 0.95238 1.01739 1.01998 1.21365 0.96092 0.95309 1.02140 1.20250 0.85178 0.98820 1.04264 1.22503 0.97169 0.94608 0.88625 1.77191 0.86160 1.26301 1.22457 1.46119 1.07919 1.57120 1.05463 0.71163 1.23170 0.99037 0.97060 0.85748 1.20373 0.92066 1.22659 0.94804 1.17230 0.85741 0.75984 0.83419 1.90762 1.16198 1.50316 1.84171 1.45923 1.09279 1.76122 1.06643 1.21528 0.97560 1.02735 0.78547 1.21906 0.96660 1.02000 0.95719 1.20968 0.98066 0.98540 0.91806 1.22114 0.99062 0.96826 0.98853 1.20902 0.90062 0.98399 0.88849 1.44051 1.27895 1.28279 1.31352 1.19148 1.35156 0.90215 0.93489 0.91841 1.25041 1.02332 0.95719 0.96693 1.70021 1.45833 1.11255 1.27754 0.86381 0.79644 0.80292 0.80518 1.20903 1.21684 1.21116 1.20754 0.95896 0.88338 0.90533 1.22220 0.96244 0.99832 0.99031 0.92681 0.92860 0.92144 0.91422 0.92378 0.90628 0.87901 0.79733 0.77237 0.90918 0.91457 0.91860 0.91658 0.91665 0.92486 0.93000 0.96577 0.93006 0.93653 0.96575 0.89647 0.93509 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.11 -1.05 5.92 -26.73 -0.16 -1.20 16 3 C -0.05 -0.46 5.25 -27.88 -0.15 -0.60 16 4 C 0.14 1.49 6.52 -82.02 -0.53 0.95 16 5 N -0.30 -2.99 12.63 33.89 0.43 -2.56 16 6 N -0.46 -2.91 7.29 30.85 0.22 -2.69 16 7 H 0.44 1.18 8.96 -182.72 -1.64 -0.46 16 8 C 0.10 0.63 11.52 -16.56 -0.19 0.44 16 9 C -0.28 -2.81 6.13 -105.07 -0.64 -3.46 16 10 C 0.59 6.99 7.81 -12.52 -0.10 6.89 16 11 O -0.54 -8.16 14.92 5.27 0.08 -8.08 16 12 N -0.73 -7.12 5.54 -61.38 -0.34 -7.46 16 13 C 0.12 1.39 5.43 -4.04 -0.02 1.37 16 14 C -0.12 -1.45 4.80 -26.73 -0.13 -1.58 16 15 C -0.07 -1.16 2.15 -90.58 -0.19 -1.36 16 16 C -0.13 -2.18 5.14 -26.61 -0.14 -2.32 16 17 C 0.14 3.04 6.52 -3.71 -0.02 3.02 16 18 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 19 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 20 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 22 N -0.90 -26.33 11.19 55.49 0.62 -25.71 16 23 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 28 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 1.16 6.56 -51.93 -0.34 0.82 16 36 H 0.19 0.34 7.46 -52.49 -0.39 -0.05 16 37 H 0.39 2.59 7.40 -40.82 -0.30 2.29 16 38 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.78 6.50 -51.93 -0.34 0.44 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.26 6.07 -51.93 -0.31 1.95 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 403.47 15.07 6.08 6.08 Total: -1.00 -34.07 403.47 -10.72 -44.79 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -9.97 Total: -1.26 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.30 Total: -4.40 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.42 Total: -53.83 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.07 -10.72 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319027706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.146 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds