Wall clock time and date at job start Tue Mar 31 2020 19:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46786 * 2 1 4 4 C 1.50698 * 109.46877 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.98918 * 269.97544 * 4 3 2 6 6 N 1.39935 * 108.89523 * 179.76817 * 5 4 3 7 7 H 0.97005 * 125.75145 * 180.27231 * 6 5 4 8 8 C 1.34257 * 108.49562 * 0.42828 * 6 5 4 9 9 C 1.38051 * 107.41106 * 359.58122 * 8 6 5 10 10 C 1.47430 * 126.41060 * 180.26211 * 9 8 6 11 11 O 1.21604 * 119.99766 * 179.97438 * 10 9 8 12 12 N 1.34770 * 120.00262 * 359.97438 * 10 9 8 13 13 C 1.46505 * 120.00079 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47099 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46908 * 180.02562 * 14 13 12 16 16 C 1.53042 * 109.46139 * 295.03184 * 15 14 13 17 17 C 1.53192 * 109.31189 * 178.60320 * 16 15 14 18 18 N 1.46930 * 108.76804 * 54.65569 * 17 16 15 19 19 C 1.36934 * 120.63454 * 126.40283 * 18 17 16 20 20 H 1.08000 * 119.99766 * 331.83138 * 19 18 17 21 21 C 1.38807 * 119.99872 * 151.81988 * 19 18 17 22 22 N 1.31614 * 120.00488 * 343.08253 * 21 19 18 23 23 Si 1.86806 * 119.99847 * 163.08253 * 21 19 18 24 24 H 1.48499 * 109.47199 * 60.00025 * 23 21 19 25 25 H 1.48499 * 109.47422 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47231 * 300.00187 * 23 21 19 27 27 C 1.46928 * 118.73432 * 306.38128 * 18 17 16 28 28 C 1.53044 * 109.45899 * 174.97735 * 15 14 13 29 29 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47707 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47038 * 60.00185 * 1 2 3 32 32 H 1.08988 * 109.47258 * 240.00253 * 2 1 3 33 33 H 1.09001 * 109.47038 * 119.99815 * 2 1 3 34 34 H 1.09001 * 109.46711 * 60.00199 * 3 2 1 35 35 H 1.08993 * 109.47269 * 300.00355 * 3 2 1 36 36 H 1.07999 * 126.29699 * 179.84489 * 8 6 5 37 37 H 0.96999 * 120.00393 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47085 * 300.00738 * 13 12 10 39 39 H 1.09005 * 109.46610 * 60.00515 * 13 12 10 40 40 H 1.08993 * 109.47320 * 300.00250 * 14 13 12 41 41 H 1.09007 * 109.46787 * 60.00221 * 14 13 12 42 42 H 1.08993 * 109.46467 * 55.00250 * 15 14 13 43 43 H 1.09003 * 109.49421 * 298.56393 * 16 15 14 44 44 H 1.08993 * 109.50070 * 58.66028 * 16 15 14 45 45 H 1.08994 * 109.59910 * 294.86464 * 17 16 15 46 46 H 1.09002 * 109.70351 * 174.50305 * 17 16 15 47 47 H 0.96997 * 120.00545 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58891 * 293.82157 * 27 18 17 49 49 H 1.08999 * 109.69955 * 173.46688 * 27 18 17 50 50 H 1.08997 * 109.49776 * 301.33593 * 28 15 14 51 51 H 1.08997 * 109.49750 * 61.39971 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3130 1.4432 1.0564 6 7 5.6507 1.4377 0.6457 7 1 6.4236 1.4331 1.2319 8 6 5.6841 1.4431 -0.6965 9 6 4.3776 1.4425 -1.1422 10 6 3.9325 1.4419 -2.5477 11 8 2.7449 1.4409 -2.8094 12 7 4.8417 1.4424 -3.5425 13 6 4.3993 1.4412 -4.9392 14 6 5.6205 1.4415 -5.8610 15 6 5.1586 1.4409 -7.3195 16 6 4.4231 0.1331 -7.6209 17 6 3.9317 0.1509 -9.0718 18 7 5.0754 0.4171 -9.9549 19 6 5.3616 -0.4224 -10.9982 20 1 5.0905 -1.4663 -10.9413 21 6 5.9998 0.0683 -12.1290 22 7 6.0344 1.3645 -12.3549 23 14 6.8098 -1.1110 -13.3301 24 1 5.7897 -2.0449 -13.8709 25 1 7.4179 -0.3417 -14.4453 26 1 7.8662 -1.8839 -12.6288 27 6 5.9059 1.6015 -9.6976 28 6 6.3749 1.5676 -8.2397 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 6.5702 1.4432 -1.3139 37 1 5.7890 1.4428 -3.3339 38 1 3.8007 0.5506 -5.1300 39 1 3.7988 2.3306 -5.1308 40 1 6.2195 2.3319 -5.6703 41 1 6.2207 0.5520 -5.6692 42 1 4.4866 2.2824 -7.4880 43 1 5.1019 -0.7075 -7.4768 44 1 3.5705 0.0320 -6.9494 45 1 3.1846 0.9348 -9.1951 46 1 3.4931 -0.8148 -9.3231 47 1 6.4807 1.7074 -13.1448 48 1 5.3197 2.5038 -9.8720 49 1 6.7714 1.5944 -10.3602 50 1 6.9116 2.4877 -8.0087 51 1 7.0354 0.7136 -8.0892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319027706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:40 Heat of formation + Delta-G solvation = 2.975527 kcal Electronic energy + Delta-G solvation = -28399.845840 eV Core-core repulsion = 24527.072891 eV Total energy + Delta-G solvation = -3872.772949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.42099 -40.22595 -39.37850 -36.71339 -36.09494 -34.98053 -33.09892 -32.56295 -31.79029 -31.31731 -29.68869 -28.05040 -26.83880 -24.85476 -23.96244 -23.37554 -22.86186 -22.12697 -21.33307 -20.66900 -20.44309 -19.32502 -18.66936 -17.39270 -16.82925 -16.61013 -16.54690 -16.04274 -15.85355 -15.64689 -15.35809 -15.26752 -15.03022 -14.89291 -14.75815 -14.35208 -14.17805 -13.93120 -13.87963 -13.78715 -13.00678 -12.92050 -12.86557 -12.75861 -12.50972 -12.45251 -12.26221 -12.17143 -12.09038 -11.96704 -11.90787 -11.77747 -11.58106 -11.46153 -11.07198 -10.94312 -10.74976 -10.51561 -10.50194 -10.09569 -9.69045 -8.64269 -7.85137 -5.30762 0.57651 1.09627 1.47286 1.49267 1.56390 1.82083 2.35038 2.49883 2.52713 3.28515 3.46541 3.74996 3.75448 3.91092 3.98889 4.12031 4.13694 4.19497 4.23657 4.36752 4.37855 4.46057 4.52117 4.60302 4.63416 4.73294 4.79566 4.83638 4.86610 4.89069 4.94742 4.99956 5.07703 5.12577 5.13330 5.17317 5.32683 5.33848 5.40774 5.42169 5.44716 5.46028 5.51602 5.57354 5.59720 5.70128 5.84683 6.28642 6.41695 6.50427 6.75314 7.17733 7.40660 7.90135 8.41639 9.20601 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.001913 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.558935 B =14635.050650 C =15351.064984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.044 4.044 4 C 0.122 3.878 5 N -0.325 5.325 6 N -0.447 5.447 7 H 0.461 0.539 8 C 0.137 3.863 9 C -0.320 4.320 10 C 0.587 3.413 11 O -0.581 6.581 12 N -0.714 5.714 13 C 0.126 3.874 14 C -0.107 4.107 15 C -0.071 4.071 16 C -0.117 4.117 17 C 0.137 3.863 18 N -0.612 5.612 19 C -0.263 4.263 20 H 0.064 0.936 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.173 3.827 28 C -0.120 4.120 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.236 0.764 37 H 0.413 0.587 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.007 0.993 46 H 0.047 0.953 47 H 0.250 0.750 48 H -0.010 1.010 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 0.795 29.401 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.083 4.083 4 C -0.046 4.046 5 N -0.148 5.148 6 N -0.153 5.153 7 H 0.310 0.690 8 C -0.017 4.017 9 C -0.335 4.335 10 C 0.376 3.624 11 O -0.462 6.462 12 N -0.366 5.366 13 C 0.002 3.998 14 C -0.145 4.145 15 C -0.090 4.090 16 C -0.155 4.155 17 C 0.012 3.988 18 N -0.336 5.336 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.202 1.202 27 C 0.048 3.952 28 C -0.159 4.159 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.252 0.748 37 H 0.250 0.750 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.009 0.991 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.137 0.872 30.359 30.393 hybrid contribution 1.011 -0.306 -1.838 2.119 sum 2.148 0.566 28.521 28.607 Atomic orbital electron populations 1.21726 0.94356 1.02239 1.02151 1.21288 0.96852 0.94920 1.01194 1.20170 0.85735 0.98835 1.03607 1.22597 0.97431 0.95151 0.89380 1.77120 0.87729 1.27253 1.22676 1.46165 1.07413 1.55619 1.06106 0.69049 1.23795 0.99072 0.93176 0.85692 1.20317 0.93747 1.25854 0.93535 1.17537 0.85323 0.75158 0.84431 1.90741 1.18133 1.52451 1.84882 1.45677 1.10107 1.75379 1.05427 1.21299 0.97316 1.01497 0.79648 1.21691 0.96661 1.03847 0.92261 1.20884 0.96611 0.97383 0.94108 1.21964 0.99993 0.97707 0.95884 1.21081 0.89020 0.97732 0.90988 1.44347 1.29415 1.28255 1.31546 1.19480 1.34847 0.90707 0.94279 0.91871 1.25817 1.03251 0.97227 0.98546 1.70185 1.46846 1.12969 1.28225 0.85340 0.78699 0.78237 0.78167 1.20272 1.21997 1.20246 1.20623 0.94018 0.86926 0.93655 1.22011 0.97346 1.01061 0.95458 0.91994 0.91570 0.93099 0.93455 0.92000 0.89851 0.89817 0.74823 0.74992 0.92387 0.92751 0.89597 0.90189 0.92410 0.92455 0.90777 0.97480 0.93434 0.94139 0.99148 0.93100 0.91081 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.10 -2.01 5.92 30.60 0.18 -1.83 16 3 C -0.04 -0.91 5.25 29.85 0.16 -0.75 16 4 C 0.12 2.52 6.52 43.51 0.28 2.81 16 5 N -0.33 -5.99 12.63 -46.68 -0.59 -6.58 16 6 N -0.45 -4.19 7.29 -56.31 -0.41 -4.60 16 7 H 0.46 0.73 8.96 -213.42 -1.91 -1.18 16 8 C 0.14 1.14 11.52 84.28 0.97 2.11 16 9 C -0.32 -5.76 6.13 -20.15 -0.12 -5.88 16 10 C 0.59 13.21 7.81 86.67 0.68 13.89 16 11 O -0.58 -17.96 14.92 -4.04 -0.06 -18.02 16 12 N -0.71 -11.92 5.54 -466.36 -2.59 -14.50 16 13 C 0.13 2.65 5.43 86.38 0.47 3.11 16 14 C -0.11 -2.08 4.80 30.59 0.15 -1.94 16 15 C -0.07 -2.05 2.15 -10.77 -0.02 -2.08 16 16 C -0.12 -3.77 5.14 30.67 0.16 -3.61 16 17 C 0.14 5.83 6.52 86.36 0.56 6.39 16 18 N -0.61 -31.27 2.99 -699.09 -2.09 -33.36 16 19 C -0.26 -14.73 9.58 84.03 0.81 -13.92 16 20 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 21 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 22 N -0.94 -56.12 11.19 21.65 0.24 -55.88 16 23 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.17 8.35 5.30 86.36 0.46 8.81 16 28 C -0.12 -4.16 5.36 30.67 0.16 -4.00 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 2.03 6.56 -2.39 -0.02 2.01 16 36 H 0.24 -0.60 7.46 -2.91 -0.02 -0.62 16 37 H 0.41 3.55 7.40 -92.71 -0.69 2.86 16 38 H 0.06 1.41 6.54 -2.39 -0.02 1.39 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.09 6.50 -2.39 -0.02 2.07 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 50 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -78.27 403.47 0.89 -77.38 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -1.67 Total: 9.51 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.02 Total: -1.19 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -5.44 Total: -114.92 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.06 Total: -18.02 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -78.27 0.89 -77.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319027706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.356 kcal (2) G-P(sol) polarization free energy of solvation -78.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds