Wall clock time and date at job start Tue Mar 31 2020 19:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.50693 * 109.46915 * 120.00357 * 2 1 3 5 5 C 1.35364 * 126.38670 * 325.02211 * 4 2 1 6 6 C 1.41504 * 105.50394 * 179.97438 * 5 4 2 7 7 C 1.47709 * 126.52150 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99491 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00165 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99904 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.53913 * 327.61030 * 10 9 7 12 12 C 1.54968 * 110.53200 * 90.24241 * 10 9 7 13 13 C 1.54890 * 102.77665 * 156.56825 * 12 10 9 14 14 C 1.54267 * 104.19471 * 322.08042 * 13 12 10 15 15 C 1.53879 * 106.59823 * 23.61259 * 14 13 12 16 16 H 1.09000 * 110.03088 * 240.66112 * 15 14 13 17 17 C 1.53004 * 110.02989 * 119.28086 * 15 14 13 18 18 N 1.46504 * 109.46932 * 67.09457 * 17 15 14 19 19 C 1.36934 * 119.99567 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00537 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99798 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00229 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00112 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00128 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99958 * 23 21 19 27 27 N 1.31813 * 106.96155 * 0.23972 * 6 5 4 28 28 N 1.28469 * 110.07556 * 359.59459 * 27 6 5 29 29 C 1.46491 * 124.88643 * 180.12983 * 28 27 6 30 30 H 1.09004 * 109.46827 * 59.99599 * 1 2 3 31 31 H 1.08994 * 109.47728 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47019 * 299.99908 * 1 2 3 33 33 H 1.09003 * 109.46511 * 240.00102 * 2 1 3 34 34 H 1.09004 * 109.47040 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47399 * 300.00359 * 3 2 1 36 36 H 1.09000 * 109.47011 * 60.00088 * 3 2 1 37 37 H 1.07995 * 127.24806 * 359.95465 * 5 4 2 38 38 H 0.96995 * 120.00183 * 0.02562 * 9 7 6 39 39 H 1.09003 * 110.71812 * 38.25115 * 12 10 9 40 40 H 1.09004 * 110.91950 * 274.98037 * 12 10 9 41 41 H 1.09003 * 110.47947 * 203.40520 * 13 12 10 42 42 H 1.08998 * 110.48419 * 80.76240 * 13 12 10 43 43 H 1.08993 * 110.03429 * 264.32907 * 14 13 12 44 44 H 1.08996 * 110.06999 * 142.91776 * 14 13 12 45 45 H 1.08998 * 109.47524 * 307.09101 * 17 15 14 46 46 H 1.08997 * 109.47093 * 187.09002 * 17 15 14 47 47 H 0.97000 * 119.99825 * 359.97438 * 18 17 15 48 48 H 0.97005 * 119.99717 * 0.02562 * 22 21 19 49 49 H 1.08996 * 109.47901 * 270.32981 * 29 28 27 50 50 H 1.09007 * 109.47452 * 30.33177 * 29 28 27 51 51 H 1.09002 * 109.47111 * 150.32583 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4581 -0.6969 2.4561 6 6 2.2881 -1.5022 3.2716 7 6 2.0883 -1.8023 4.7040 8 8 1.1319 -1.3390 5.2944 9 7 2.9656 -2.5906 5.3561 10 6 2.7671 -2.8887 6.7767 11 1 2.2959 -2.0457 7.2821 12 6 1.9131 -4.1703 6.9490 13 6 2.3098 -4.6585 8.3644 14 6 3.8210 -4.3630 8.4568 15 6 4.1114 -3.2379 7.4480 16 1 4.8244 -3.5828 6.6991 17 6 4.6678 -2.0123 8.1756 18 7 5.9908 -2.3270 8.7208 19 6 6.6880 -1.3763 9.4172 20 1 6.2630 -0.3944 9.5643 21 6 7.9412 -1.6745 9.9342 22 7 8.4591 -2.8713 9.7555 23 14 8.8928 -0.3774 10.8837 24 1 9.7397 0.4014 9.9449 25 1 7.9402 0.5356 11.5649 26 1 9.7551 -1.0382 11.8962 27 7 3.2766 -1.9290 2.5112 28 7 3.1388 -1.4799 1.3155 29 6 4.0541 -1.7569 0.2057 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.5566 -0.1800 2.7500 38 1 3.7285 -2.9606 4.8849 39 1 2.1765 -4.9133 6.1961 40 1 0.8491 -3.9379 6.9044 41 1 2.1232 -5.7277 8.4652 42 1 1.7648 -4.1016 9.1266 43 1 4.3923 -5.2541 8.1969 44 1 4.0773 -4.0362 9.4646 45 1 3.9961 -1.7362 8.9884 46 1 4.7518 -1.1812 7.4755 47 1 6.3727 -3.2088 8.5884 48 1 7.9651 -3.5448 9.2621 49 1 4.8367 -0.9987 0.1822 50 1 4.5046 -2.7400 0.3430 51 1 3.5019 -1.7384 -0.7339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320135901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:16 Heat of formation + Delta-G solvation = 31.199207 kcal Electronic energy + Delta-G solvation = -28859.920673 eV Core-core repulsion = 24988.371594 eV Total energy + Delta-G solvation = -3871.549078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.93735 -39.72913 -37.88438 -36.18263 -34.67395 -33.81592 -33.39786 -31.35860 -29.92882 -28.46140 -28.22328 -27.62118 -26.96485 -24.27255 -23.41903 -22.85450 -22.26092 -20.71042 -20.42235 -19.96055 -19.07723 -17.66141 -17.18935 -16.58987 -16.55296 -16.25914 -15.14291 -14.98591 -14.72389 -14.50592 -14.27264 -14.12459 -14.08720 -13.65899 -13.56084 -13.42018 -13.24561 -13.04742 -12.92827 -12.79996 -12.58961 -12.28887 -12.04884 -11.86390 -11.67766 -11.33123 -11.11950 -10.95094 -10.84676 -10.72634 -10.64230 -10.47850 -10.43229 -10.10069 -9.99907 -9.96385 -9.32970 -9.15396 -9.13354 -8.82562 -8.81597 -6.93635 -6.05399 -3.03958 1.47235 1.92511 2.19520 3.23558 3.45391 3.55047 3.60163 3.74135 4.02545 4.10925 4.35093 4.57656 4.61640 4.69143 4.70720 4.80217 4.84943 4.85971 4.99514 5.09529 5.14522 5.20385 5.29825 5.36901 5.40614 5.51101 5.55482 5.58334 5.60873 5.66356 5.68013 5.74599 5.77595 5.84662 5.89700 5.94240 6.06558 6.11819 6.21847 6.29082 6.30849 6.48800 6.50911 6.56705 6.64665 6.80258 6.92405 7.51488 7.80572 7.87635 8.29549 8.81541 9.29393 10.15713 10.31423 11.43578 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.002534 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.347649 B =11046.789861 C =12400.700679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.015 3.985 5 C -0.173 4.173 6 C -0.012 4.012 7 C 0.605 3.395 8 O -0.536 6.536 9 N -0.705 5.705 10 C 0.147 3.853 11 H 0.099 0.901 12 C -0.132 4.132 13 C -0.121 4.121 14 C -0.115 4.115 15 C -0.104 4.104 16 H 0.075 0.925 17 C 0.166 3.834 18 N -0.742 5.742 19 C -0.328 4.328 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.946 5.946 23 Si 1.083 2.917 24 H -0.296 1.296 25 H -0.295 1.295 26 H -0.288 1.288 27 N -0.260 5.260 28 N -0.281 5.281 29 C 0.084 3.916 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.160 0.840 38 H 0.406 0.594 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.018 0.982 47 H 0.367 0.633 48 H 0.254 0.746 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 0.976 -23.963 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.109 4.109 5 C -0.201 4.201 6 C -0.172 4.172 7 C 0.389 3.611 8 O -0.411 6.411 9 N -0.355 5.355 10 C 0.042 3.958 11 H 0.117 0.883 12 C -0.171 4.171 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.123 4.123 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.388 5.388 19 C -0.459 4.459 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.593 5.593 23 Si 0.914 3.086 24 H -0.224 1.224 25 H -0.222 1.222 26 H -0.214 1.214 27 N -0.096 5.096 28 N -0.069 5.069 29 C -0.056 4.056 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.178 0.822 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.200 0.800 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.368 1.169 -22.720 26.907 hybrid contribution -1.437 -0.254 -1.249 1.921 sum -15.804 0.914 -23.969 28.725 Atomic orbital electron populations 1.21830 0.93003 1.02580 1.02706 1.19671 0.96804 0.95474 0.92353 1.21858 1.01147 0.94498 1.02774 1.21358 0.91006 1.00345 0.98217 1.21440 1.03062 1.04557 0.91049 1.21918 0.95754 1.04273 0.95297 1.16878 0.82454 0.78212 0.83547 1.90778 1.30424 1.52694 1.67176 1.45919 1.28174 1.50160 1.11285 1.21955 0.95990 0.98031 0.79831 0.88346 1.22871 0.99823 0.96907 0.97473 1.22308 0.96542 1.00651 0.96406 1.22135 0.95234 0.97571 1.00393 1.22207 0.95165 0.97251 0.97721 0.90713 1.20667 0.87567 0.93291 0.94600 1.42357 1.16282 1.13914 1.66234 1.20075 1.01338 0.94393 1.30070 0.91831 1.25757 0.95376 1.01581 1.01746 1.70851 1.40255 1.03944 1.44210 0.83196 0.75432 0.73950 0.76057 1.22407 1.22166 1.21402 1.73553 1.23358 1.21160 0.91492 1.45288 1.19230 1.34663 1.07698 1.22165 0.92952 1.04487 0.86016 0.91753 0.92180 0.91638 0.90248 0.92657 0.91672 0.91719 0.82223 0.75909 0.91423 0.91297 0.91712 0.91444 0.91967 0.90358 0.95967 0.96407 0.80018 0.93441 0.89604 0.88364 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.78 37.16 0.33 -0.45 16 2 C -0.02 -0.14 3.09 -91.77 -0.28 -0.42 16 3 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 4 C 0.01 0.14 5.84 -82.21 -0.48 -0.34 16 5 C -0.17 -2.10 9.96 -39.36 -0.39 -2.49 16 6 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 7 C 0.60 9.72 7.82 -12.39 -0.10 9.62 16 8 O -0.54 -9.94 16.58 5.30 0.09 -9.85 16 9 N -0.71 -10.49 5.16 -53.14 -0.27 -10.76 16 10 C 0.15 2.25 2.75 -66.23 -0.18 2.07 16 11 H 0.10 1.69 7.27 -51.93 -0.38 1.31 16 12 C -0.13 -1.76 6.58 -24.70 -0.16 -1.92 16 13 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 14 C -0.12 -1.81 6.15 -25.61 -0.16 -1.97 16 15 C -0.10 -1.76 2.70 -89.50 -0.24 -2.00 16 16 H 0.07 1.27 7.73 -51.93 -0.40 0.86 16 17 C 0.17 3.58 5.28 -4.04 -0.02 3.56 16 18 N -0.74 -19.34 5.36 -59.91 -0.32 -19.66 16 19 C -0.33 -9.61 9.99 -15.06 -0.15 -9.76 16 20 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.05 -1.42 5.50 -17.43 -0.10 -1.52 16 22 N -0.95 -29.87 13.70 55.49 0.76 -29.11 16 23 Si 1.08 26.77 29.92 -169.99 -5.09 21.68 16 24 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 N -0.26 -3.39 11.67 33.42 0.39 -3.00 16 28 N -0.28 -2.81 3.70 -63.86 -0.24 -3.04 16 29 C 0.08 0.45 11.11 59.84 0.66 1.11 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.39 7.35 -51.93 -0.38 0.01 16 33 H 0.08 0.34 6.86 -51.93 -0.36 -0.02 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.16 1.80 7.47 -52.49 -0.39 1.41 16 38 H 0.41 5.61 8.09 -40.82 -0.33 5.28 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.42 7.59 -51.93 -0.39 1.02 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.37 9.65 6.36 -40.82 -0.26 9.39 16 48 H 0.25 7.89 6.77 -40.82 -0.28 7.61 16 49 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 51 H 0.09 0.24 6.87 -51.93 -0.36 -0.11 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -36.21 410.29 -8.84 -45.05 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -8.65 Total: 10.04 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.69 Total: -7.52 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: 0.32 Total: -65.58 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -5.09 Total: 21.68 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.21 -8.84 -45.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320135901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.249 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds