Wall clock time and date at job start Tue Mar 31 2020 18:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47220 * 2 1 4 4 N 1.30454 * 125.99034 * 270.03915 * 3 2 1 5 5 N 1.39932 * 108.89720 * 179.97438 * 4 3 2 6 6 C 1.46502 * 125.75081 * 179.97438 * 5 4 3 7 7 C 1.34261 * 108.49364 * 359.75390 * 5 4 3 8 8 C 1.38046 * 107.41671 * 0.38950 * 7 5 4 9 9 C 1.47427 * 126.41440 * 179.87441 * 8 7 5 10 10 O 1.21600 * 119.99764 * 179.69175 * 9 8 7 11 11 N 1.34779 * 119.99900 * 359.68792 * 9 8 7 12 12 C 1.46500 * 119.99793 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47092 * 325.00176 * 12 11 9 14 14 C 1.53005 * 109.47094 * 84.99912 * 12 11 9 15 15 C 1.52999 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.47007 * 205.00228 * 12 11 9 19 19 H 1.09002 * 109.46695 * 299.99637 * 18 12 11 20 20 C 1.52997 * 109.47232 * 59.99903 * 18 12 11 21 21 N 1.46501 * 109.46866 * 184.99942 * 20 18 12 22 22 C 1.36939 * 119.99364 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00666 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99537 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99924 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00007 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47042 * 89.99809 * 26 24 22 28 28 H 1.48495 * 109.46994 * 209.99798 * 26 24 22 29 29 H 1.48499 * 109.47099 * 330.00104 * 26 24 22 30 30 H 1.08996 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46865 * 300.00432 * 1 2 3 32 32 H 1.09004 * 109.46730 * 59.99723 * 1 2 3 33 33 H 1.08999 * 109.47294 * 239.99888 * 2 1 3 34 34 H 1.09000 * 109.46482 * 119.99845 * 2 1 3 35 35 H 1.09008 * 109.46628 * 89.98252 * 6 5 4 36 36 H 1.08996 * 109.47164 * 209.97404 * 6 5 4 37 37 H 1.08999 * 109.47480 * 329.98080 * 6 5 4 38 38 H 1.08005 * 126.29163 * 180.24603 * 7 5 4 39 39 H 0.97004 * 119.99983 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47360 * 300.00194 * 14 12 11 41 41 H 1.09002 * 109.46935 * 60.00169 * 14 12 11 42 42 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 44 44 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 45 45 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 47 47 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 48 48 H 1.09002 * 109.47223 * 304.99821 * 20 18 12 49 49 H 1.09001 * 109.46547 * 65.00156 * 20 18 12 50 50 H 0.96998 * 120.00018 * 0.02562 * 21 20 18 51 51 H 0.96996 * 119.99897 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2872 2.1437 -1.0555 5 7 2.7328 3.4049 -0.6442 6 6 3.1218 4.5058 -1.5291 7 6 2.7391 3.4374 0.6980 8 6 2.3093 2.2035 1.1433 9 6 2.1610 1.7832 2.5486 10 8 1.7652 0.6634 2.8097 11 7 2.4642 2.6400 3.5438 12 6 2.3174 2.2222 4.9402 13 1 1.4578 1.5582 5.0323 14 6 3.5813 1.4851 5.3876 15 6 3.4282 1.0493 6.8462 16 6 3.2177 2.2821 7.7275 17 6 1.9538 3.0190 7.2801 18 6 2.1066 3.4547 5.8218 19 1 2.9662 4.1185 5.7297 20 6 0.8427 4.1917 5.3744 21 7 0.7057 5.4342 6.1384 22 6 -0.3586 6.2649 5.9093 23 1 -1.0971 6.0040 5.1658 24 6 -0.4887 7.4420 6.6336 25 7 -1.5119 8.2402 6.4138 26 14 0.7883 7.8930 7.9202 27 1 1.8672 8.6935 7.2874 28 1 0.1466 8.6902 8.9962 29 1 1.3662 6.6539 8.4996 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2491 5.1210 -1.7488 36 1 3.8814 5.1147 -1.0391 37 1 3.5240 4.1009 -2.4577 38 1 3.0295 4.2744 1.3158 39 1 2.7796 3.5334 3.3354 40 1 3.7315 0.6070 4.7595 41 1 4.4409 2.1490 5.2955 42 1 4.3285 0.5238 7.1647 43 1 2.5686 0.3854 6.9387 44 1 4.0774 2.9459 7.6350 45 1 3.1082 1.9714 8.7666 46 1 1.0942 2.3553 7.3726 47 1 1.8041 3.8976 7.9077 48 1 0.9147 4.4245 4.3120 49 1 -0.0278 3.5595 5.5498 50 1 1.3688 5.6684 6.8065 51 1 -1.6026 9.0629 6.9196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322335620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:31 Heat of formation + Delta-G solvation = 27.152918 kcal Electronic energy + Delta-G solvation = -29704.150041 eV Core-core repulsion = 25832.425502 eV Total energy + Delta-G solvation = -3871.724539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.57567 -39.80110 -37.98923 -34.91305 -34.78694 -34.00477 -32.01732 -31.88018 -30.80019 -30.03417 -29.00730 -27.05185 -25.46706 -23.99994 -22.98339 -22.52705 -21.78032 -20.70568 -20.22705 -20.03894 -19.39404 -17.92813 -17.42075 -16.16653 -15.93026 -15.88606 -14.92428 -14.88722 -14.55963 -14.43014 -14.32472 -14.17800 -13.98879 -13.79656 -13.38961 -13.25558 -13.08110 -12.90283 -12.84957 -12.73974 -12.51868 -12.10558 -12.04978 -11.66613 -11.53290 -11.21036 -11.19083 -11.05315 -10.97895 -10.82379 -10.79837 -10.45479 -10.32745 -10.10793 -10.01253 -9.63045 -9.58098 -9.51999 -8.97819 -8.88782 -8.66220 -7.23679 -5.78285 -3.13516 1.37878 2.09038 2.15886 3.32623 3.34078 3.36408 3.42802 3.52867 4.14375 4.42619 4.56787 4.67846 4.69879 4.82062 4.84573 4.95765 5.01428 5.08150 5.14847 5.17327 5.27862 5.31908 5.38990 5.49805 5.51646 5.55089 5.56223 5.58543 5.62016 5.65518 5.78411 5.85124 5.92539 6.07739 6.11091 6.13114 6.18230 6.22516 6.25170 6.29055 6.42280 6.47143 6.52193 6.57467 6.63369 6.69626 6.83167 7.42876 7.69419 7.98851 8.40803 8.41894 9.20282 9.92451 10.12641 11.40330 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.003507 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.342332 B = 7982.760086 C = 9663.565962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C 0.136 3.864 4 N -0.303 5.303 5 N -0.362 5.362 6 C 0.097 3.903 7 C 0.102 3.898 8 C -0.286 4.286 9 C 0.596 3.404 10 O -0.543 6.543 11 N -0.721 5.721 12 C 0.158 3.842 13 H 0.090 0.910 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.104 4.104 19 H 0.073 0.927 20 C 0.163 3.837 21 N -0.755 5.755 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.183 0.817 39 H 0.397 0.603 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.021 -13.271 -10.821 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.032 4.032 4 N -0.125 5.125 5 N -0.140 5.140 6 C -0.044 4.044 7 C -0.050 4.050 8 C -0.301 4.301 9 C 0.384 3.616 10 O -0.421 6.421 11 N -0.370 5.370 12 C 0.053 3.947 13 H 0.108 0.892 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.147 4.147 18 C -0.124 4.124 19 H 0.091 0.909 20 C 0.036 3.964 21 N -0.400 5.400 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.714 3.286 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.200 0.800 39 H 0.231 0.769 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.193 0.807 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.580 -13.801 -12.129 22.847 hybrid contribution 1.022 1.342 1.676 2.378 sum 14.602 -12.458 -10.453 21.856 Atomic orbital electron populations 1.21619 0.93941 1.01981 1.02160 1.20101 0.96556 0.88026 1.03860 1.22454 0.95133 0.96880 0.88741 1.77173 1.22145 0.90430 1.22708 1.48290 1.49380 1.11530 1.04779 1.22001 1.01650 0.86172 0.94618 1.23144 0.97812 0.98742 0.85300 1.20280 1.19752 0.95386 0.94652 1.17184 0.76490 0.84549 0.83376 1.90719 1.47046 1.20120 1.84212 1.45912 1.68409 1.16736 1.05993 1.20931 0.98521 0.96045 0.79184 0.89169 1.21898 0.97744 1.00347 0.96446 1.21481 1.01652 0.97736 0.94412 1.21599 0.98429 0.96926 0.98964 1.21510 0.97499 1.00611 0.95095 1.21638 0.99914 0.95663 0.95138 0.90892 1.20642 0.93743 0.87357 0.94664 1.42724 1.29330 1.22304 1.45685 1.19064 1.00926 0.99246 1.17977 0.89338 1.24669 0.97707 0.97204 0.99589 1.69703 1.30529 1.13714 1.44363 0.86561 0.81716 0.78016 0.82294 1.21193 1.21763 1.20281 0.91978 0.91963 0.93064 0.90910 0.88106 0.90084 0.88996 0.88967 0.79968 0.76920 0.91564 0.92093 0.92175 0.91749 0.92170 0.92087 0.91574 0.90960 0.95506 0.95514 0.80677 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.90 37.16 0.37 -1.21 16 2 C -0.05 -0.54 5.97 -27.88 -0.17 -0.71 16 3 C 0.14 1.80 6.52 -82.02 -0.53 1.26 16 4 N -0.30 -3.95 12.50 33.90 0.42 -3.53 16 5 N -0.36 -3.77 3.98 -67.59 -0.27 -4.04 16 6 C 0.10 0.57 11.44 59.85 0.68 1.25 16 7 C 0.10 1.04 10.99 -16.56 -0.18 0.86 16 8 C -0.29 -3.68 6.13 -105.06 -0.64 -4.33 16 9 C 0.60 8.36 7.78 -12.52 -0.10 8.26 16 10 O -0.54 -8.93 14.58 5.28 0.08 -8.86 16 11 N -0.72 -8.89 4.29 -54.88 -0.24 -9.13 16 12 C 0.16 2.05 1.90 -67.93 -0.13 1.92 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 14 C -0.13 -1.43 5.50 -26.73 -0.15 -1.58 16 15 C -0.11 -1.21 5.92 -26.73 -0.16 -1.37 16 16 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 17 C -0.11 -1.52 5.08 -26.75 -0.14 -1.66 16 18 C -0.10 -1.48 1.80 -90.64 -0.16 -1.65 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 20 C 0.16 3.04 5.57 -4.04 -0.02 3.02 16 21 N -0.75 -17.29 5.13 -59.91 -0.31 -17.60 16 22 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 25 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 26 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.27 6.55 -51.93 -0.34 0.93 16 35 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.18 1.25 7.46 -52.48 -0.39 0.86 16 39 H 0.40 4.19 7.32 -40.82 -0.30 3.89 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.15 7.18 -51.93 -0.37 0.78 16 48 H 0.03 0.50 7.30 -51.93 -0.38 0.12 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.36 8.01 4.71 -40.82 -0.19 7.81 16 51 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -34.94 404.04 -8.63 -43.57 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.72 Total: 9.31 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.74 Total: -4.36 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.39 Total: -62.71 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.94 -8.63 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322335620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.719 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds