Wall clock time and date at job start Tue Mar 31 2020 18:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47220 * 2 1 4 4 N 1.30454 * 125.99034 * 270.03915 * 3 2 1 5 5 N 1.39932 * 108.89720 * 179.97438 * 4 3 2 6 6 C 1.46502 * 125.75081 * 179.97438 * 5 4 3 7 7 C 1.34261 * 108.49364 * 359.75390 * 5 4 3 8 8 C 1.38046 * 107.41671 * 0.38950 * 7 5 4 9 9 C 1.47427 * 126.41440 * 179.87441 * 8 7 5 10 10 O 1.21600 * 119.99764 * 179.69175 * 9 8 7 11 11 N 1.34779 * 119.99900 * 359.68792 * 9 8 7 12 12 C 1.46500 * 119.99793 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47092 * 325.00176 * 12 11 9 14 14 C 1.53005 * 109.47094 * 84.99912 * 12 11 9 15 15 C 1.52999 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.47007 * 205.00228 * 12 11 9 19 19 H 1.09002 * 109.46695 * 299.99637 * 18 12 11 20 20 C 1.52997 * 109.47232 * 59.99903 * 18 12 11 21 21 N 1.46501 * 109.46866 * 184.99942 * 20 18 12 22 22 C 1.36939 * 119.99364 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00666 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99537 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99924 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00007 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47042 * 89.99809 * 26 24 22 28 28 H 1.48495 * 109.46994 * 209.99798 * 26 24 22 29 29 H 1.48499 * 109.47099 * 330.00104 * 26 24 22 30 30 H 1.08996 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46865 * 300.00432 * 1 2 3 32 32 H 1.09004 * 109.46730 * 59.99723 * 1 2 3 33 33 H 1.08999 * 109.47294 * 239.99888 * 2 1 3 34 34 H 1.09000 * 109.46482 * 119.99845 * 2 1 3 35 35 H 1.09008 * 109.46628 * 89.98252 * 6 5 4 36 36 H 1.08996 * 109.47164 * 209.97404 * 6 5 4 37 37 H 1.08999 * 109.47480 * 329.98080 * 6 5 4 38 38 H 1.08005 * 126.29163 * 180.24603 * 7 5 4 39 39 H 0.97004 * 119.99983 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47360 * 300.00194 * 14 12 11 41 41 H 1.09002 * 109.46935 * 60.00169 * 14 12 11 42 42 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 44 44 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 45 45 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 47 47 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 48 48 H 1.09002 * 109.47223 * 304.99821 * 20 18 12 49 49 H 1.09001 * 109.46547 * 65.00156 * 20 18 12 50 50 H 0.96998 * 120.00018 * 0.02562 * 21 20 18 51 51 H 0.96996 * 119.99897 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2872 2.1437 -1.0555 5 7 2.7328 3.4049 -0.6442 6 6 3.1218 4.5058 -1.5291 7 6 2.7391 3.4374 0.6980 8 6 2.3093 2.2035 1.1433 9 6 2.1610 1.7832 2.5486 10 8 1.7652 0.6634 2.8097 11 7 2.4642 2.6400 3.5438 12 6 2.3174 2.2222 4.9402 13 1 1.4578 1.5582 5.0323 14 6 3.5813 1.4851 5.3876 15 6 3.4282 1.0493 6.8462 16 6 3.2177 2.2821 7.7275 17 6 1.9538 3.0190 7.2801 18 6 2.1066 3.4547 5.8218 19 1 2.9662 4.1185 5.7297 20 6 0.8427 4.1917 5.3744 21 7 0.7057 5.4342 6.1384 22 6 -0.3586 6.2649 5.9093 23 1 -1.0971 6.0040 5.1658 24 6 -0.4887 7.4420 6.6336 25 7 -1.5119 8.2402 6.4138 26 14 0.7883 7.8930 7.9202 27 1 1.8672 8.6935 7.2874 28 1 0.1466 8.6902 8.9962 29 1 1.3662 6.6539 8.4996 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2491 5.1210 -1.7488 36 1 3.8814 5.1147 -1.0391 37 1 3.5240 4.1009 -2.4577 38 1 3.0295 4.2744 1.3158 39 1 2.7796 3.5334 3.3354 40 1 3.7315 0.6070 4.7595 41 1 4.4409 2.1490 5.2955 42 1 4.3285 0.5238 7.1647 43 1 2.5686 0.3854 6.9387 44 1 4.0774 2.9459 7.6350 45 1 3.1082 1.9714 8.7666 46 1 1.0942 2.3553 7.3726 47 1 1.8041 3.8976 7.9077 48 1 0.9147 4.4245 4.3120 49 1 -0.0278 3.5595 5.5498 50 1 1.3688 5.6684 6.8065 51 1 -1.6026 9.0629 6.9196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322335620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:22 Heat of formation + Delta-G solvation = 4.143150 kcal Electronic energy + Delta-G solvation = -29705.147819 eV Core-core repulsion = 25832.425502 eV Total energy + Delta-G solvation = -3872.722317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -42.45576 -40.87929 -39.11154 -36.55259 -35.75530 -35.04114 -33.82289 -32.75406 -31.76431 -31.56327 -30.01212 -27.80049 -27.03101 -24.95490 -24.40866 -23.70165 -22.77954 -22.07106 -21.25601 -20.97709 -20.40205 -19.71269 -18.56552 -17.18898 -16.90993 -16.71595 -16.54884 -16.07393 -15.75568 -15.53422 -15.44173 -15.34972 -15.04547 -14.81336 -14.70000 -14.58879 -14.25870 -13.99857 -13.77892 -13.67677 -13.65314 -13.47254 -13.01217 -12.89245 -12.73537 -12.63020 -12.45036 -12.17119 -12.12518 -12.11033 -11.87934 -11.83033 -11.75545 -11.47152 -11.31083 -11.11611 -10.96308 -10.68530 -10.39402 -9.99709 -9.58299 -9.27521 -8.01481 -5.35192 0.53207 1.11050 1.39110 1.43364 1.45715 1.51052 2.31023 2.50000 2.50340 3.29843 3.35842 3.46076 3.69224 3.79049 3.90646 3.99808 4.01464 4.19908 4.24755 4.30567 4.34652 4.39317 4.43514 4.46301 4.48168 4.50255 4.57163 4.60568 4.65208 4.69404 4.71745 4.88519 4.91712 5.02459 5.07879 5.14048 5.17142 5.21774 5.27064 5.29151 5.32544 5.34384 5.44309 5.49704 5.55936 5.67438 5.76529 5.89303 6.22054 6.51857 6.71831 7.09505 7.38295 7.84563 8.06227 9.20385 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.003507 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.342332 B = 7982.760086 C = 9663.565962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C 0.119 3.881 4 N -0.328 5.328 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.117 3.883 8 C -0.317 4.317 9 C 0.595 3.405 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.164 3.836 13 H 0.065 0.935 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.089 4.089 19 H 0.091 0.909 20 C 0.163 3.837 21 N -0.751 5.751 22 C -0.235 4.235 23 H 0.049 0.951 24 C -0.063 4.063 25 N -0.986 5.986 26 Si 0.957 3.043 27 H -0.273 1.273 28 H -0.299 1.299 29 H -0.248 1.248 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.219 0.781 39 H 0.407 0.593 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.005 0.995 50 H 0.368 0.632 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.369 -12.963 -10.250 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.048 4.048 4 N -0.149 5.149 5 N -0.136 5.136 6 C -0.053 4.053 7 C -0.036 4.036 8 C -0.332 4.332 9 C 0.384 3.616 10 O -0.456 6.456 11 N -0.364 5.364 12 C 0.059 3.941 13 H 0.083 0.917 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.108 4.108 19 H 0.109 0.891 20 C 0.036 3.964 21 N -0.398 5.398 22 C -0.366 4.366 23 H 0.067 0.933 24 C -0.255 4.255 25 N -0.637 5.637 26 Si 0.783 3.217 27 H -0.199 1.199 28 H -0.226 1.226 29 H -0.172 1.172 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.023 0.977 50 H 0.202 0.798 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.968 -13.516 -11.588 24.594 hybrid contribution -0.113 1.257 1.367 1.860 sum 16.856 -12.258 -10.221 23.213 Atomic orbital electron populations 1.21555 0.93872 1.02719 1.00860 1.20077 0.96559 0.87904 1.03843 1.22668 0.95467 0.97472 0.89153 1.77102 1.23013 0.91794 1.23022 1.48686 1.48053 1.11444 1.05459 1.22408 1.02900 0.85261 0.94753 1.23630 0.95817 0.98595 0.85588 1.20313 1.22079 0.96847 0.93930 1.17392 0.75921 0.84233 0.84098 1.90696 1.48626 1.21555 1.84747 1.45814 1.67997 1.17057 1.05492 1.20800 0.98818 0.95101 0.79344 0.91697 1.21819 0.96970 0.99961 0.96782 1.21475 1.02362 0.97528 0.93628 1.21547 0.97071 0.96910 0.99570 1.21507 0.98930 1.00088 0.94354 1.21500 0.97850 0.95804 0.95651 0.89071 1.20745 0.95427 0.85820 0.94363 1.42640 1.28045 1.22799 1.46268 1.18995 1.01211 0.99867 1.16535 0.93309 1.25536 1.00273 0.97199 1.02456 1.69902 1.33219 1.14429 1.46127 0.85388 0.78823 0.78635 0.78815 1.19888 1.22616 1.17206 0.90260 0.94414 0.92989 0.89523 0.89357 0.89363 0.85835 0.88304 0.76439 0.75660 0.92498 0.90401 0.90097 0.92534 0.90868 0.90979 0.92658 0.92568 0.95328 0.97652 0.79778 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.90 71.98 0.71 -2.39 16 2 C -0.04 -1.08 5.97 29.85 0.18 -0.90 16 3 C 0.12 3.19 6.52 43.51 0.28 3.47 16 4 N -0.33 -8.35 12.50 -46.68 -0.58 -8.93 16 5 N -0.36 -6.84 3.98 -367.76 -1.46 -8.31 16 6 C 0.09 0.79 11.44 127.77 1.46 2.25 16 7 C 0.12 2.18 10.99 84.28 0.93 3.10 16 8 C -0.32 -8.06 6.13 -20.15 -0.12 -8.18 16 9 C 0.59 16.73 7.78 86.66 0.67 17.40 16 10 O -0.58 -19.60 14.58 -4.03 -0.06 -19.66 16 11 N -0.71 -16.86 4.29 -445.79 -1.91 -18.77 16 12 C 0.16 4.10 1.90 44.99 0.09 4.18 16 13 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 14 C -0.12 -2.39 5.50 30.60 0.17 -2.22 16 15 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 16 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 17 C -0.11 -2.88 5.08 30.58 0.16 -2.73 16 18 C -0.09 -2.37 1.80 -10.81 -0.02 -2.39 16 19 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 20 C 0.16 6.01 5.57 86.38 0.48 6.49 16 21 N -0.75 -33.79 5.13 -343.45 -1.76 -35.55 16 22 C -0.24 -13.32 10.47 84.04 0.88 -12.44 16 23 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 24 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 25 N -0.99 -62.95 13.97 21.65 0.30 -62.65 16 26 Si 0.96 44.00 27.74 68.60 1.90 45.90 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.25 -10.10 6.52 99.48 0.65 -9.45 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.35 6.55 -2.39 -0.02 2.33 16 35 H 0.09 0.72 8.14 -2.38 -0.02 0.71 16 36 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.22 2.24 7.46 -2.91 -0.02 2.22 16 39 H 0.41 7.71 7.32 -92.71 -0.68 7.03 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 1.65 7.18 -2.39 -0.02 1.64 16 48 H 0.03 1.06 7.30 -2.39 -0.02 1.04 16 49 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.37 15.45 4.71 -92.71 -0.44 15.01 16 51 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -78.66 404.04 2.87 -75.79 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.25 Total: 33.63 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.69 Total: -1.45 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -5.42 Total: -134.21 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.06 Total: -19.66 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Total: -78.66 2.87 -75.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322335620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.933 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds