Wall clock time and date at job start Tue Mar 31 2020 18:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47013 * 2 1 4 4 N 1.30445 * 125.99016 * 270.00074 * 3 2 1 5 5 N 1.39934 * 108.90096 * 179.77981 * 4 3 2 6 6 C 1.46501 * 125.75597 * 180.23946 * 5 4 3 7 7 C 1.34258 * 108.49108 * 0.36787 * 5 4 3 8 8 C 1.38040 * 107.41601 * 359.63851 * 7 5 4 9 9 C 1.47428 * 126.41744 * 180.22795 * 8 7 5 10 10 O 1.21602 * 120.00383 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00029 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00173 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46864 * 35.00290 * 12 11 9 14 14 C 1.53000 * 109.47258 * 275.00086 * 12 11 9 15 15 C 1.52999 * 109.47393 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47085 * 59.99960 * 15 14 12 17 17 C 1.53000 * 109.47037 * 300.00258 * 16 15 14 18 18 C 1.52999 * 109.47020 * 59.99967 * 17 16 15 19 19 H 1.09002 * 109.47342 * 60.00000 * 18 17 16 20 20 C 1.53000 * 109.47020 * 180.02562 * 18 17 16 21 21 N 1.46506 * 109.46993 * 294.99858 * 20 18 17 22 22 C 1.36938 * 119.99933 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99787 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00143 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46724 * 90.00137 * 26 24 22 28 28 H 1.48489 * 109.47359 * 210.00296 * 26 24 22 29 29 H 1.48497 * 109.46894 * 330.00584 * 26 24 22 30 30 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47495 * 299.99846 * 1 2 3 32 32 H 1.09001 * 109.46981 * 60.00429 * 1 2 3 33 33 H 1.08998 * 109.47486 * 239.99666 * 2 1 3 34 34 H 1.09001 * 109.46981 * 119.99571 * 2 1 3 35 35 H 1.09001 * 109.46919 * 270.14852 * 6 5 4 36 36 H 1.09002 * 109.47262 * 30.14776 * 6 5 4 37 37 H 1.09002 * 109.46889 * 150.15257 * 6 5 4 38 38 H 1.08002 * 126.29527 * 179.90965 * 7 5 4 39 39 H 0.97000 * 119.99565 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.47062 * 300.00261 * 14 12 11 41 41 H 1.09000 * 109.47026 * 59.99960 * 14 12 11 42 42 H 1.09002 * 109.47061 * 180.02562 * 15 14 12 43 43 H 1.08996 * 109.46693 * 300.00183 * 15 14 12 44 44 H 1.08995 * 109.46636 * 59.99974 * 16 15 14 45 45 H 1.08991 * 109.47075 * 180.02562 * 16 15 14 46 46 H 1.08995 * 109.46775 * 179.97438 * 17 16 15 47 47 H 1.08996 * 109.47350 * 300.00151 * 17 16 15 48 48 H 1.08999 * 109.47428 * 54.99939 * 20 18 17 49 49 H 1.09004 * 109.47447 * 175.00467 * 20 18 17 50 50 H 0.96993 * 119.99949 * 359.97438 * 21 20 18 51 51 H 0.97000 * 120.00293 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2878 2.1435 -1.0555 5 7 2.7288 3.4063 -0.6443 6 6 3.1118 4.5093 -1.5291 7 6 2.7445 3.4356 0.6979 8 6 2.3090 2.2037 1.1432 9 6 2.1604 1.7835 2.5485 10 8 1.7649 0.6636 2.8097 11 7 2.4628 2.6405 3.5438 12 6 2.3157 2.2228 4.9402 13 1 2.5682 1.1665 5.0319 14 6 0.8694 2.4423 5.3886 15 6 0.7158 2.0067 6.8472 16 6 1.6541 2.8342 7.7281 17 6 3.1003 2.6147 7.2797 18 6 3.2538 3.0504 5.8211 19 1 3.0012 4.1067 5.7289 20 6 4.6999 2.8302 5.3726 21 7 5.5874 3.7114 6.1357 22 6 6.9371 3.6897 5.9056 23 1 7.3474 3.0233 5.1612 24 6 7.7779 4.5249 6.6282 25 7 7.2779 5.3374 7.5350 26 14 9.6190 4.4959 6.3139 27 1 9.9562 5.4827 5.2565 28 1 10.3403 4.8443 7.5642 29 1 10.0241 3.1378 5.8707 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.1766 4.4430 -1.7524 36 1 2.5415 4.4464 -2.4559 37 1 2.9022 5.4592 -1.0372 38 1 3.0392 4.2710 1.3157 39 1 2.7779 3.5340 3.3354 40 1 0.6169 3.4987 5.2968 41 1 0.2010 1.8531 4.7607 42 1 -0.3146 2.1626 7.1664 43 1 0.9685 0.9504 6.9393 44 1 1.4014 3.8904 7.6358 45 1 1.5450 2.5235 8.7671 46 1 3.7686 3.2045 7.9070 47 1 3.3530 1.5584 7.3718 48 1 4.9806 1.7917 5.5478 49 1 4.7893 3.0565 4.3100 50 1 5.2189 4.3101 6.8039 51 1 7.8655 5.9208 8.0403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322335622.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:03 Heat of formation + Delta-G solvation = 22.953262 kcal Electronic energy + Delta-G solvation = -29607.328673 eV Core-core repulsion = 25735.422023 eV Total energy + Delta-G solvation = -3871.906649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -41.56342 -39.71587 -37.89725 -34.89318 -34.60024 -33.94104 -31.99745 -31.83405 -30.76360 -29.60325 -28.86235 -27.03908 -25.21618 -23.99078 -23.04438 -22.70202 -21.77390 -20.59663 -20.17014 -19.97711 -19.32875 -17.77258 -17.04953 -16.11634 -15.91955 -15.79651 -14.93902 -14.83870 -14.53337 -14.43454 -14.21703 -14.14920 -13.79362 -13.66537 -13.38690 -13.17143 -13.08424 -12.97002 -12.85285 -12.63691 -12.35665 -12.11824 -11.79007 -11.56294 -11.49553 -11.22097 -11.04552 -10.89439 -10.86899 -10.81145 -10.69055 -10.33445 -10.21033 -10.05946 -9.93818 -9.64856 -9.56715 -9.50219 -8.92853 -8.85800 -8.62047 -6.91517 -5.77595 -3.05520 1.39324 2.10400 2.16447 3.38649 3.41892 3.47915 3.49487 3.56002 4.15050 4.44246 4.57090 4.67978 4.82038 4.85713 4.95577 5.02270 5.07356 5.07849 5.19795 5.29284 5.32408 5.36557 5.41153 5.51050 5.57399 5.58299 5.64890 5.69261 5.73243 5.79542 5.90276 5.94027 6.09934 6.15543 6.17584 6.20341 6.26623 6.29991 6.33389 6.43617 6.43757 6.60160 6.60367 6.69023 6.72225 6.82636 6.95381 7.44108 7.69817 7.74744 8.41789 8.46089 9.53066 10.11352 10.46308 11.45273 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.003479 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.739534 B = 8047.098657 C =10273.634984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C 0.135 3.865 4 N -0.304 5.304 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.101 3.899 8 C -0.285 4.285 9 C 0.595 3.405 10 O -0.544 6.544 11 N -0.719 5.719 12 C 0.157 3.843 13 H 0.088 0.912 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.107 4.107 18 C -0.100 4.100 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.731 5.731 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.184 0.816 39 H 0.397 0.603 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.018 0.982 49 H 0.018 0.982 50 H 0.384 0.616 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.803 -2.955 -13.120 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.032 4.032 4 N -0.125 5.125 5 N -0.140 5.140 6 C -0.044 4.044 7 C -0.050 4.050 8 C -0.300 4.300 9 C 0.383 3.617 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.052 3.948 13 H 0.106 0.894 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.119 4.119 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.375 5.375 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.201 0.799 39 H 0.231 0.769 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.036 0.964 49 H 0.036 0.964 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.844 -3.628 -14.389 21.708 hybrid contribution 1.325 1.036 0.788 1.857 sum -14.520 -2.593 -13.601 20.063 Atomic orbital electron populations 1.21602 0.94111 1.01922 1.01842 1.20108 0.96378 0.88110 1.04083 1.22442 0.95178 0.96846 0.88753 1.77163 1.22244 0.90368 1.22727 1.48285 1.49536 1.11444 1.04780 1.21995 1.02001 0.85798 0.94621 1.23151 0.97500 0.99103 0.85273 1.20299 1.19511 0.95480 0.94706 1.17188 0.76656 0.84494 0.83375 1.90716 1.47247 1.20046 1.84219 1.45927 1.68068 1.16839 1.06074 1.20966 0.94441 1.00213 0.79142 0.89371 1.21890 0.96659 1.01382 0.96460 1.21486 0.99154 1.00195 0.94443 1.21594 0.95434 1.00010 0.98827 1.21488 0.95870 1.01925 0.95195 1.21590 0.95705 0.99537 0.95053 0.90844 1.20665 0.87491 0.94221 0.94504 1.42372 1.03414 1.46302 1.45450 1.19225 0.83389 1.17610 1.16604 0.91345 1.24710 0.97903 0.99311 0.99040 1.69651 1.34021 1.27538 1.27072 0.86218 0.85665 0.77521 0.76985 1.21827 1.21776 1.20785 0.91999 0.92188 0.93163 0.90826 0.87981 0.90140 0.88991 0.88981 0.79941 0.76923 0.92090 0.91735 0.92273 0.91887 0.92101 0.92164 0.90323 0.92028 0.96370 0.96392 0.78241 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.05 -0.57 5.97 -27.88 -0.17 -0.73 16 3 C 0.14 1.81 6.52 -82.02 -0.53 1.28 16 4 N -0.30 -3.98 12.50 33.90 0.42 -3.56 16 5 N -0.36 -3.81 3.98 -67.60 -0.27 -4.08 16 6 C 0.10 0.57 11.44 59.85 0.68 1.26 16 7 C 0.10 1.06 10.99 -16.56 -0.18 0.88 16 8 C -0.28 -3.74 6.13 -105.07 -0.64 -4.39 16 9 C 0.60 8.60 7.78 -12.52 -0.10 8.50 16 10 O -0.54 -9.17 14.58 5.28 0.08 -9.09 16 11 N -0.72 -9.34 4.29 -54.88 -0.24 -9.58 16 12 C 0.16 2.17 1.90 -67.93 -0.13 2.04 16 13 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 14 C -0.13 -1.53 5.49 -26.73 -0.15 -1.67 16 15 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.11 -1.61 5.08 -26.73 -0.14 -1.75 16 18 C -0.10 -1.53 1.80 -90.62 -0.16 -1.69 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.11 5.56 -4.04 -0.02 3.09 16 21 N -0.73 -17.90 5.33 -59.90 -0.32 -18.22 16 22 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 26 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.35 6.55 -51.93 -0.34 1.01 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.18 1.31 7.46 -52.49 -0.39 0.92 16 39 H 0.40 4.48 7.31 -40.82 -0.30 4.18 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.02 0.36 7.30 -51.93 -0.38 -0.02 16 50 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 51 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 407.16 15.07 6.14 6.14 Total: -1.00 -33.86 407.16 -8.98 -42.84 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.77 Total: 9.89 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.73 Total: -4.57 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.32 Total: -62.44 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.86 -8.98 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322335622.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.797 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds