Wall clock time and date at job start Tue Mar 31 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47013 * 2 1 4 4 N 1.30445 * 125.99016 * 270.00074 * 3 2 1 5 5 N 1.39934 * 108.90096 * 179.77981 * 4 3 2 6 6 C 1.46501 * 125.75597 * 180.23946 * 5 4 3 7 7 C 1.34258 * 108.49108 * 0.36787 * 5 4 3 8 8 C 1.38040 * 107.41601 * 359.63851 * 7 5 4 9 9 C 1.47428 * 126.41744 * 180.22795 * 8 7 5 10 10 O 1.21602 * 120.00383 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00029 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00173 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46864 * 35.00290 * 12 11 9 14 14 C 1.53000 * 109.47258 * 275.00086 * 12 11 9 15 15 C 1.52999 * 109.47393 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47085 * 59.99960 * 15 14 12 17 17 C 1.53000 * 109.47037 * 300.00258 * 16 15 14 18 18 C 1.52999 * 109.47020 * 59.99967 * 17 16 15 19 19 H 1.09002 * 109.47342 * 60.00000 * 18 17 16 20 20 C 1.53000 * 109.47020 * 180.02562 * 18 17 16 21 21 N 1.46506 * 109.46993 * 294.99858 * 20 18 17 22 22 C 1.36938 * 119.99933 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99787 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00143 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46724 * 90.00137 * 26 24 22 28 28 H 1.48489 * 109.47359 * 210.00296 * 26 24 22 29 29 H 1.48497 * 109.46894 * 330.00584 * 26 24 22 30 30 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47495 * 299.99846 * 1 2 3 32 32 H 1.09001 * 109.46981 * 60.00429 * 1 2 3 33 33 H 1.08998 * 109.47486 * 239.99666 * 2 1 3 34 34 H 1.09001 * 109.46981 * 119.99571 * 2 1 3 35 35 H 1.09001 * 109.46919 * 270.14852 * 6 5 4 36 36 H 1.09002 * 109.47262 * 30.14776 * 6 5 4 37 37 H 1.09002 * 109.46889 * 150.15257 * 6 5 4 38 38 H 1.08002 * 126.29527 * 179.90965 * 7 5 4 39 39 H 0.97000 * 119.99565 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.47062 * 300.00261 * 14 12 11 41 41 H 1.09000 * 109.47026 * 59.99960 * 14 12 11 42 42 H 1.09002 * 109.47061 * 180.02562 * 15 14 12 43 43 H 1.08996 * 109.46693 * 300.00183 * 15 14 12 44 44 H 1.08995 * 109.46636 * 59.99974 * 16 15 14 45 45 H 1.08991 * 109.47075 * 180.02562 * 16 15 14 46 46 H 1.08995 * 109.46775 * 179.97438 * 17 16 15 47 47 H 1.08996 * 109.47350 * 300.00151 * 17 16 15 48 48 H 1.08999 * 109.47428 * 54.99939 * 20 18 17 49 49 H 1.09004 * 109.47447 * 175.00467 * 20 18 17 50 50 H 0.96993 * 119.99949 * 359.97438 * 21 20 18 51 51 H 0.97000 * 120.00293 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2878 2.1435 -1.0555 5 7 2.7288 3.4063 -0.6443 6 6 3.1118 4.5093 -1.5291 7 6 2.7445 3.4356 0.6979 8 6 2.3090 2.2037 1.1432 9 6 2.1604 1.7835 2.5485 10 8 1.7649 0.6636 2.8097 11 7 2.4628 2.6405 3.5438 12 6 2.3157 2.2228 4.9402 13 1 2.5682 1.1665 5.0319 14 6 0.8694 2.4423 5.3886 15 6 0.7158 2.0067 6.8472 16 6 1.6541 2.8342 7.7281 17 6 3.1003 2.6147 7.2797 18 6 3.2538 3.0504 5.8211 19 1 3.0012 4.1067 5.7289 20 6 4.6999 2.8302 5.3726 21 7 5.5874 3.7114 6.1357 22 6 6.9371 3.6897 5.9056 23 1 7.3474 3.0233 5.1612 24 6 7.7779 4.5249 6.6282 25 7 7.2779 5.3374 7.5350 26 14 9.6190 4.4959 6.3139 27 1 9.9562 5.4827 5.2565 28 1 10.3403 4.8443 7.5642 29 1 10.0241 3.1378 5.8707 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.1766 4.4430 -1.7524 36 1 2.5415 4.4464 -2.4559 37 1 2.9022 5.4592 -1.0372 38 1 3.0392 4.2710 1.3157 39 1 2.7779 3.5340 3.3354 40 1 0.6169 3.4987 5.2968 41 1 0.2010 1.8531 4.7607 42 1 -0.3146 2.1626 7.1664 43 1 0.9685 0.9504 6.9393 44 1 1.4014 3.8904 7.6358 45 1 1.5450 2.5235 8.7671 46 1 3.7686 3.2045 7.9070 47 1 3.3530 1.5584 7.3718 48 1 4.9806 1.7917 5.5478 49 1 4.7893 3.0565 4.3100 50 1 5.2189 4.3101 6.8039 51 1 7.8655 5.9208 8.0403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322335622.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:55 Heat of formation + Delta-G solvation = 1.662340 kcal Electronic energy + Delta-G solvation = -29608.251916 eV Core-core repulsion = 25735.422023 eV Total energy + Delta-G solvation = -3872.829893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.45532 -40.85637 -39.07670 -36.39984 -35.74883 -35.03237 -33.66330 -32.74065 -31.73042 -31.18736 -29.96679 -27.77771 -26.89750 -24.94505 -24.69355 -23.72081 -22.79445 -21.95844 -21.25040 -20.96380 -20.36768 -19.27584 -18.50010 -17.16530 -16.88659 -16.71515 -16.65626 -15.83706 -15.73972 -15.56599 -15.39007 -15.25970 -15.06709 -14.95501 -14.70771 -14.53616 -14.09372 -13.98072 -13.75407 -13.59957 -13.48049 -13.28810 -12.93220 -12.87552 -12.73616 -12.63909 -12.43339 -12.18129 -12.09870 -12.07876 -11.89352 -11.83992 -11.74203 -11.45837 -11.29708 -11.07926 -10.92694 -10.67543 -10.38904 -9.98919 -9.57743 -8.96402 -7.93933 -5.21579 0.53123 1.11461 1.45653 1.47272 1.48505 1.56980 2.31753 2.50580 2.56266 3.35877 3.39439 3.60618 3.69638 3.82944 3.97736 4.01088 4.13192 4.20683 4.25680 4.32161 4.40662 4.42480 4.44699 4.48547 4.50648 4.55065 4.58426 4.62713 4.66757 4.69702 4.72874 4.90474 4.93730 5.04920 5.09319 5.17349 5.18570 5.22910 5.29117 5.30430 5.34331 5.36094 5.47830 5.49905 5.51366 5.57534 5.68649 5.89358 6.28669 6.52041 6.72259 7.35885 7.38398 8.11504 8.36734 9.29175 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.003479 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.739534 B = 8047.098657 C =10273.634984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 C 0.120 3.880 4 N -0.327 5.327 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.117 3.883 8 C -0.316 4.316 9 C 0.595 3.405 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.166 3.834 13 H 0.066 0.934 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.084 4.084 19 H 0.081 0.919 20 C 0.161 3.839 21 N -0.738 5.738 22 C -0.244 4.244 23 H 0.068 0.932 24 C -0.069 4.069 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.284 1.284 28 H -0.295 1.295 29 H -0.275 1.275 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.218 0.782 39 H 0.406 0.594 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.002 0.998 49 H 0.025 0.975 50 H 0.377 0.623 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.391 -1.831 -14.101 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.047 4.047 4 N -0.149 5.149 5 N -0.136 5.136 6 C -0.053 4.053 7 C -0.036 4.036 8 C -0.331 4.331 9 C 0.384 3.616 10 O -0.456 6.456 11 N -0.363 5.363 12 C 0.061 3.939 13 H 0.084 0.916 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.143 4.143 18 C -0.103 4.103 19 H 0.099 0.901 20 C 0.034 3.966 21 N -0.381 5.381 22 C -0.376 4.376 23 H 0.086 0.914 24 C -0.262 4.262 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.211 1.211 28 H -0.222 1.222 29 H -0.200 1.200 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.234 0.766 39 H 0.242 0.758 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.020 0.980 49 H 0.042 0.958 50 H 0.210 0.790 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.441 -2.503 -15.417 22.677 hybrid contribution 1.532 0.691 1.024 1.968 sum -14.908 -1.812 -14.392 20.801 Atomic orbital electron populations 1.21528 0.93154 1.02747 1.01165 1.20095 0.97201 0.87832 1.03564 1.22654 0.95471 0.97424 0.89108 1.77097 1.23111 0.91684 1.22982 1.48683 1.48148 1.11372 1.05409 1.22409 1.02668 0.85524 0.94712 1.23611 0.95482 0.98936 0.85604 1.20300 1.21955 0.96984 0.93869 1.17404 0.76062 0.84091 0.84093 1.90694 1.48811 1.21380 1.84752 1.45827 1.67831 1.17141 1.05503 1.20791 0.95263 0.98503 0.79374 0.91593 1.21817 0.94804 1.02133 0.96798 1.21471 1.00113 0.99671 0.93598 1.21533 0.93241 1.00726 0.99556 1.21432 0.97574 1.00782 0.94538 1.21424 0.93166 1.00220 0.95501 0.90083 1.20758 0.89327 0.92251 0.94257 1.42506 1.03137 1.46757 1.45738 1.19555 0.84951 1.17017 1.16098 0.91375 1.25455 1.01979 0.99492 0.99286 1.69792 1.35203 1.28436 1.28151 0.85226 0.80714 0.77736 0.76605 1.21143 1.22167 1.20046 0.90451 0.93790 0.92706 0.89877 0.89805 0.89208 0.88325 0.85946 0.76569 0.75769 0.90715 0.92306 0.90046 0.92358 0.91327 0.91116 0.93089 0.92857 0.98032 0.95755 0.79045 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.89 71.98 0.71 -1.98 16 2 C -0.05 -1.16 5.97 29.85 0.18 -0.98 16 3 C 0.12 3.22 6.52 43.52 0.28 3.50 16 4 N -0.33 -8.29 12.50 -46.68 -0.58 -8.87 16 5 N -0.36 -6.82 3.98 -367.77 -1.46 -8.28 16 6 C 0.09 0.77 11.44 127.77 1.46 2.24 16 7 C 0.12 2.21 10.99 84.27 0.93 3.14 16 8 C -0.32 -8.13 6.13 -20.15 -0.12 -8.26 16 9 C 0.59 17.14 7.78 86.66 0.67 17.81 16 10 O -0.58 -19.92 14.58 -4.04 -0.06 -19.98 16 11 N -0.71 -17.91 4.29 -445.80 -1.91 -19.83 16 12 C 0.17 4.48 1.90 44.99 0.09 4.56 16 13 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 14 C -0.12 -2.65 5.49 30.59 0.17 -2.49 16 15 C -0.11 -2.31 5.92 30.60 0.18 -2.12 16 16 C -0.11 -2.60 5.92 30.60 0.18 -2.42 16 17 C -0.10 -3.17 5.08 30.59 0.16 -3.01 16 18 C -0.08 -2.53 1.80 -10.79 -0.02 -2.55 16 19 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 20 C 0.16 6.32 5.56 86.38 0.48 6.80 16 21 N -0.74 -36.42 5.33 -343.43 -1.83 -38.25 16 22 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 23 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 25 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 26 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.33 6.55 -2.39 -0.02 2.31 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.22 2.37 7.46 -2.91 -0.02 2.35 16 39 H 0.41 8.47 7.31 -92.71 -0.68 7.79 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.82 7.18 -2.39 -0.02 1.80 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.02 0.94 7.30 -2.38 -0.02 0.92 16 50 H 0.38 19.50 6.85 -92.71 -0.64 18.87 16 51 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -73.80 407.16 2.72 -71.08 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.39 Total: 35.73 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.65 Total: -1.89 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -5.51 Total: -132.62 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.98 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.80 2.72 -71.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322335622.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -73.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds