Wall clock time and date at job start Tue Mar 31 2020 18:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46805 * 2 1 4 4 C 1.39678 * 126.06772 * 125.31265 * 3 2 1 5 5 C 1.38404 * 105.35688 * 180.12553 * 4 3 2 6 6 C 1.47165 * 126.88287 * 179.86094 * 5 4 3 7 7 O 1.21632 * 119.99611 * 353.88229 * 6 5 4 8 8 N 1.34768 * 119.99802 * 173.60948 * 6 5 4 9 9 C 1.46502 * 119.99826 * 175.18100 * 8 6 5 10 10 H 1.09004 * 109.47356 * 344.22681 * 9 8 6 11 11 C 1.53000 * 109.47103 * 224.22527 * 9 8 6 12 12 N 1.46501 * 109.47261 * 54.99934 * 11 9 8 13 13 C 1.36935 * 120.00332 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99664 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00316 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99759 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47246 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47164 * 120.00042 * 17 15 13 20 20 H 1.48502 * 109.46958 * 240.00151 * 17 15 13 21 21 C 1.53005 * 109.47433 * 104.22369 * 9 8 6 22 22 C 1.54266 * 110.02956 * 51.70920 * 21 9 8 23 23 C 1.54890 * 104.19529 * 217.10612 * 22 21 9 24 24 C 1.54889 * 102.74812 * 37.94152 * 23 22 21 25 25 C 1.53877 * 110.03019 * 294.54141 * 21 9 8 26 26 N 1.36594 * 106.23368 * 359.59494 * 5 4 3 27 27 C 1.46495 * 125.19261 * 180.26732 * 26 5 4 28 28 N 1.28443 * 109.62046 * 0.26520 * 26 5 4 29 29 H 1.08995 * 109.46800 * 299.99868 * 1 2 3 30 30 H 1.08999 * 109.46941 * 60.00197 * 1 2 3 31 31 H 1.09005 * 109.46611 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47487 * 240.00025 * 2 1 3 33 33 H 1.08999 * 109.46941 * 119.99803 * 2 1 3 34 34 H 1.08002 * 127.32008 * 359.97438 * 4 3 2 35 35 H 0.97000 * 120.00908 * 355.17573 * 8 6 5 36 36 H 1.09003 * 109.47002 * 175.00049 * 11 9 8 37 37 H 1.08997 * 109.47032 * 294.99696 * 11 9 8 38 38 H 0.97002 * 119.99841 * 0.02562 * 12 11 9 39 39 H 0.96999 * 119.99624 * 180.02562 * 16 15 13 40 40 H 1.08995 * 110.01714 * 173.14861 * 21 9 8 41 41 H 1.09005 * 110.48491 * 335.78125 * 22 21 9 42 42 H 1.09001 * 110.48853 * 98.42697 * 22 21 9 43 43 H 1.08994 * 110.75389 * 279.62960 * 23 22 21 44 44 H 1.09000 * 110.75923 * 156.25365 * 23 22 21 45 45 H 1.08994 * 110.48848 * 203.38154 * 24 23 22 46 46 H 1.08999 * 110.60186 * 80.79198 * 24 23 22 47 47 H 1.08998 * 110.02788 * 238.56493 * 25 21 9 48 48 H 1.08998 * 110.03162 * 359.95190 * 25 21 9 49 49 H 1.09001 * 109.47368 * 83.57350 * 27 26 5 50 50 H 1.09003 * 109.47388 * 203.57807 * 27 26 5 51 51 H 1.09003 * 109.47283 * 323.57621 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9217 1.9787 0.9213 5 6 3.0842 3.2943 0.5236 6 6 3.9250 4.3149 1.1695 7 8 4.4812 4.0671 2.2224 8 7 4.0830 5.5221 0.5916 9 6 4.8324 6.5733 1.2841 10 1 4.9406 6.3095 2.3362 11 6 4.0786 7.8994 1.1658 12 7 2.7118 7.7305 1.6654 13 6 1.8443 8.7900 1.6581 14 1 2.1678 9.7503 1.2844 15 6 0.5494 8.6301 2.1319 16 7 0.1553 7.4599 2.5878 17 14 -0.6338 10.0755 2.1226 18 1 0.0490 11.2705 1.5648 19 1 -1.8143 9.7435 1.2854 20 1 -1.0763 10.3619 3.5110 21 6 6.2172 6.7154 0.6492 22 6 6.0833 6.8828 -0.8785 23 6 7.2871 6.0960 -1.4538 24 6 7.3731 4.8677 -0.5143 25 6 7.0372 5.4341 0.8808 26 7 2.3124 3.4541 -0.5921 27 6 2.1830 4.6958 -1.3585 28 7 1.7175 2.3494 -0.8667 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3825 1.4883 1.7661 35 1 3.7008 5.6950 -0.2830 36 1 4.5892 8.6614 1.7547 37 1 4.0480 8.2079 0.1208 38 1 2.4213 6.8681 2.0013 39 1 -0.7497 7.3481 2.9186 40 1 6.7368 7.5734 1.0754 41 1 5.1445 6.4533 -1.2285 42 1 6.1486 7.9354 -1.1542 43 1 8.1992 6.6900 -1.3974 44 1 7.0904 5.7846 -2.4797 45 1 8.3796 4.4496 -0.5240 46 1 6.6440 4.1111 -0.8044 47 1 7.9553 5.6706 1.4187 48 1 6.4490 4.7114 1.4463 49 1 3.0120 4.7769 -2.0616 50 1 1.2410 4.6880 -1.9067 51 1 2.1999 5.5467 -0.6773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324508149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:24 Heat of formation + Delta-G solvation = 42.038403 kcal Electronic energy + Delta-G solvation = -30634.592298 eV Core-core repulsion = 26763.513242 eV Total energy + Delta-G solvation = -3871.079056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.43999 -39.94687 -37.80238 -35.48551 -34.87729 -33.55882 -31.91970 -31.43149 -30.48155 -29.47798 -28.66629 -26.99882 -26.33757 -23.85806 -23.41286 -22.81076 -21.52884 -20.96809 -20.40140 -19.45470 -19.25028 -17.45495 -17.21870 -16.28142 -16.00669 -15.84478 -15.61340 -14.92069 -14.59688 -14.51568 -14.14298 -13.97795 -13.82818 -13.60681 -13.35275 -13.33311 -13.15851 -12.93438 -12.73949 -12.43385 -12.14347 -11.97889 -11.71392 -11.49471 -11.26822 -11.23698 -11.05624 -10.98863 -10.90146 -10.71458 -10.62649 -10.49806 -10.45745 -10.32989 -10.06159 -9.80837 -9.79709 -8.97724 -8.95388 -8.76732 -8.66801 -7.01243 -5.82533 -3.13136 1.46437 2.52949 2.69260 3.29114 3.38191 3.43984 3.46524 3.49101 4.43589 4.50067 4.62980 4.68414 4.75021 4.79353 4.89077 4.99833 5.08516 5.23888 5.32857 5.38537 5.45501 5.47523 5.49913 5.51135 5.60047 5.62016 5.67651 5.69333 5.72216 5.81745 5.85638 5.89893 5.94143 5.98098 6.02041 6.09664 6.11883 6.23628 6.25876 6.28564 6.35153 6.39176 6.54625 6.59368 6.64048 6.80809 6.88675 7.63215 7.65492 8.15854 8.34472 8.38639 9.46467 10.02416 10.37403 11.39317 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007265 B = 0.005140 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.196055 B = 5446.437017 C = 8339.511876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.019 3.981 4 C -0.160 4.160 5 C -0.031 4.031 6 C 0.596 3.404 7 O -0.526 6.526 8 N -0.708 5.708 9 C 0.138 3.862 10 H 0.100 0.900 11 C 0.143 3.857 12 N -0.731 5.731 13 C -0.244 4.244 14 H 0.071 0.929 15 C -0.010 4.010 16 N -0.928 5.928 17 Si 0.905 3.095 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.291 1.291 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.128 4.128 26 N -0.270 5.270 27 C 0.069 3.931 28 N -0.273 5.273 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.396 0.604 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 -10.071 -9.999 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.189 4.189 5 C -0.158 4.158 6 C 0.381 3.619 7 O -0.401 6.401 8 N -0.363 5.363 9 C 0.033 3.967 10 H 0.118 0.882 11 C 0.014 3.986 12 N -0.376 5.376 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.576 5.576 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.218 1.218 21 C -0.119 4.119 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.166 4.166 26 N -0.059 5.059 27 C -0.072 4.072 28 N -0.107 5.107 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.236 0.764 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.125 0.875 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.174 -9.674 -10.272 17.396 hybrid contribution -0.635 0.698 0.460 1.050 sum 9.539 -8.975 -9.812 16.365 Atomic orbital electron populations 1.21719 0.94656 1.01389 1.02710 1.19828 0.96138 0.88493 1.02724 1.21938 1.00401 0.96672 0.94747 1.21980 1.02474 0.92145 1.02271 1.21762 1.02896 0.97367 0.93760 1.16893 0.79750 0.81072 0.84190 1.90787 1.48111 1.79223 1.22009 1.46282 1.55655 1.12045 1.22300 1.21446 0.89789 0.87563 0.97875 0.88213 1.21022 0.87285 0.92878 0.97398 1.42352 1.07162 1.12209 1.75855 1.19240 0.92041 0.90928 1.35302 0.91090 1.24753 0.97588 0.96824 1.01528 1.69682 1.18180 1.22114 1.47669 0.86148 0.81183 0.81725 0.77289 1.20540 1.21901 1.21825 1.22138 0.95426 0.98507 0.95799 1.22391 0.98028 1.00141 0.94851 1.22487 0.98438 0.96782 0.98408 1.22300 1.00648 0.97399 0.95455 1.22312 0.99709 0.97415 0.97117 1.45564 1.31273 1.09292 1.19803 1.22489 1.05365 0.82183 0.97121 1.72991 1.19357 0.92636 1.25725 0.92515 0.92168 0.92514 0.90757 0.90159 0.82194 0.76382 0.94908 0.95806 0.78124 0.93490 0.89947 0.92080 0.91426 0.91662 0.92106 0.92282 0.92316 0.92272 0.90014 0.89649 0.87504 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.88 37.16 0.37 -1.19 16 2 C -0.03 -0.35 6.51 -27.88 -0.18 -0.54 16 3 C 0.02 0.28 6.49 -82.47 -0.54 -0.26 16 4 C -0.16 -2.49 10.78 -38.98 -0.42 -2.91 16 5 C -0.03 -0.51 6.96 -82.06 -0.57 -1.08 16 6 C 0.60 10.44 7.21 -12.64 -0.09 10.35 16 7 O -0.53 -10.51 14.70 5.25 0.08 -10.43 16 8 N -0.71 -10.96 3.22 -54.96 -0.18 -11.14 16 9 C 0.14 2.19 1.99 -67.93 -0.13 2.06 16 10 H 0.10 1.84 7.11 -51.93 -0.37 1.47 16 11 C 0.14 2.63 5.86 -4.04 -0.02 2.61 16 12 N -0.73 -17.57 5.43 -59.91 -0.33 -17.90 16 13 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 14 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 17 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C -0.10 -1.25 2.76 -89.50 -0.25 -1.50 16 22 C -0.12 -1.29 5.36 -25.07 -0.13 -1.42 16 23 C -0.12 -1.22 6.91 -24.74 -0.17 -1.40 16 24 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 25 C -0.13 -1.62 6.25 -25.61 -0.16 -1.78 16 26 N -0.27 -4.15 3.75 -63.88 -0.24 -4.39 16 27 C 0.07 0.85 9.72 59.84 0.58 1.44 16 28 N -0.27 -4.27 11.87 33.64 0.40 -3.87 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.40 5.53 3.43 -40.82 -0.14 5.39 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.42 7.39 -51.93 -0.38 0.04 16 38 H 0.38 10.10 7.33 -40.82 -0.30 9.80 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.68 6.06 -51.93 -0.31 0.37 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 1.24 5.20 -51.93 -0.27 0.97 16 49 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 50 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 51 H 0.11 1.56 6.05 -51.93 -0.31 1.25 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -32.54 400.69 -9.06 -41.60 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -8.40 Total: 14.37 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.14 Total: -4.20 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 0.38 Total: -64.34 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.54 -9.06 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324508149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.638 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds