Wall clock time and date at job start Tue Mar 31 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46805 * 2 1 4 4 C 1.39678 * 126.06772 * 125.31265 * 3 2 1 5 5 C 1.38404 * 105.35688 * 180.12553 * 4 3 2 6 6 C 1.47165 * 126.88287 * 179.86094 * 5 4 3 7 7 O 1.21632 * 119.99611 * 353.88229 * 6 5 4 8 8 N 1.34768 * 119.99802 * 173.60948 * 6 5 4 9 9 C 1.46502 * 119.99826 * 175.18100 * 8 6 5 10 10 H 1.09004 * 109.47356 * 344.22681 * 9 8 6 11 11 C 1.53000 * 109.47103 * 224.22527 * 9 8 6 12 12 N 1.46501 * 109.47261 * 54.99934 * 11 9 8 13 13 C 1.36935 * 120.00332 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99664 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00316 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99759 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47246 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47164 * 120.00042 * 17 15 13 20 20 H 1.48502 * 109.46958 * 240.00151 * 17 15 13 21 21 C 1.53005 * 109.47433 * 104.22369 * 9 8 6 22 22 C 1.54266 * 110.02956 * 51.70920 * 21 9 8 23 23 C 1.54890 * 104.19529 * 217.10612 * 22 21 9 24 24 C 1.54889 * 102.74812 * 37.94152 * 23 22 21 25 25 C 1.53877 * 110.03019 * 294.54141 * 21 9 8 26 26 N 1.36594 * 106.23368 * 359.59494 * 5 4 3 27 27 C 1.46495 * 125.19261 * 180.26732 * 26 5 4 28 28 N 1.28443 * 109.62046 * 0.26520 * 26 5 4 29 29 H 1.08995 * 109.46800 * 299.99868 * 1 2 3 30 30 H 1.08999 * 109.46941 * 60.00197 * 1 2 3 31 31 H 1.09005 * 109.46611 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47487 * 240.00025 * 2 1 3 33 33 H 1.08999 * 109.46941 * 119.99803 * 2 1 3 34 34 H 1.08002 * 127.32008 * 359.97438 * 4 3 2 35 35 H 0.97000 * 120.00908 * 355.17573 * 8 6 5 36 36 H 1.09003 * 109.47002 * 175.00049 * 11 9 8 37 37 H 1.08997 * 109.47032 * 294.99696 * 11 9 8 38 38 H 0.97002 * 119.99841 * 0.02562 * 12 11 9 39 39 H 0.96999 * 119.99624 * 180.02562 * 16 15 13 40 40 H 1.08995 * 110.01714 * 173.14861 * 21 9 8 41 41 H 1.09005 * 110.48491 * 335.78125 * 22 21 9 42 42 H 1.09001 * 110.48853 * 98.42697 * 22 21 9 43 43 H 1.08994 * 110.75389 * 279.62960 * 23 22 21 44 44 H 1.09000 * 110.75923 * 156.25365 * 23 22 21 45 45 H 1.08994 * 110.48848 * 203.38154 * 24 23 22 46 46 H 1.08999 * 110.60186 * 80.79198 * 24 23 22 47 47 H 1.08998 * 110.02788 * 238.56493 * 25 21 9 48 48 H 1.08998 * 110.03162 * 359.95190 * 25 21 9 49 49 H 1.09001 * 109.47368 * 83.57350 * 27 26 5 50 50 H 1.09003 * 109.47388 * 203.57807 * 27 26 5 51 51 H 1.09003 * 109.47283 * 323.57621 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9217 1.9787 0.9213 5 6 3.0842 3.2943 0.5236 6 6 3.9250 4.3149 1.1695 7 8 4.4812 4.0671 2.2224 8 7 4.0830 5.5221 0.5916 9 6 4.8324 6.5733 1.2841 10 1 4.9406 6.3095 2.3362 11 6 4.0786 7.8994 1.1658 12 7 2.7118 7.7305 1.6654 13 6 1.8443 8.7900 1.6581 14 1 2.1678 9.7503 1.2844 15 6 0.5494 8.6301 2.1319 16 7 0.1553 7.4599 2.5878 17 14 -0.6338 10.0755 2.1226 18 1 0.0490 11.2705 1.5648 19 1 -1.8143 9.7435 1.2854 20 1 -1.0763 10.3619 3.5110 21 6 6.2172 6.7154 0.6492 22 6 6.0833 6.8828 -0.8785 23 6 7.2871 6.0960 -1.4538 24 6 7.3731 4.8677 -0.5143 25 6 7.0372 5.4341 0.8808 26 7 2.3124 3.4541 -0.5921 27 6 2.1830 4.6958 -1.3585 28 7 1.7175 2.3494 -0.8667 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3825 1.4883 1.7661 35 1 3.7008 5.6950 -0.2830 36 1 4.5892 8.6614 1.7547 37 1 4.0480 8.2079 0.1208 38 1 2.4213 6.8681 2.0013 39 1 -0.7497 7.3481 2.9186 40 1 6.7368 7.5734 1.0754 41 1 5.1445 6.4533 -1.2285 42 1 6.1486 7.9354 -1.1542 43 1 8.1992 6.6900 -1.3974 44 1 7.0904 5.7846 -2.4797 45 1 8.3796 4.4496 -0.5240 46 1 6.6440 4.1111 -0.8044 47 1 7.9553 5.6706 1.4187 48 1 6.4490 4.7114 1.4463 49 1 3.0120 4.7769 -2.0616 50 1 1.2410 4.6880 -1.9067 51 1 2.1999 5.5467 -0.6773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324508149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:19 Heat of formation + Delta-G solvation = 22.481463 kcal Electronic energy + Delta-G solvation = -30635.440350 eV Core-core repulsion = 26763.513242 eV Total energy + Delta-G solvation = -3871.927108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -43.62272 -41.21557 -38.99424 -36.94086 -36.05139 -35.10542 -33.30412 -32.69356 -31.98214 -30.73256 -29.60018 -28.05587 -27.81894 -25.46384 -24.36392 -24.35098 -22.79991 -22.19882 -21.43713 -20.62182 -20.38158 -19.22016 -18.55643 -17.47994 -17.32437 -16.99239 -16.81081 -16.51530 -16.00942 -15.70312 -15.23383 -15.13019 -15.07662 -14.99807 -14.86427 -14.71662 -14.18214 -14.02675 -13.88443 -13.79483 -13.33187 -13.09829 -13.01434 -12.97020 -12.80779 -12.40480 -12.20261 -12.17273 -12.05445 -11.92094 -11.87214 -11.71043 -11.58346 -11.53990 -11.46222 -11.40047 -11.20770 -10.96326 -10.26521 -9.97032 -9.86488 -9.02679 -7.95795 -5.25597 0.18601 1.40418 1.45615 1.47128 1.54272 1.56551 1.99409 2.17131 2.53936 3.31758 3.39035 3.49517 3.60550 3.71291 3.80400 3.89140 4.09048 4.09718 4.13524 4.17067 4.31733 4.38931 4.45952 4.46808 4.53008 4.59039 4.60583 4.68086 4.70769 4.75732 4.85765 4.86903 4.87938 4.88201 5.06648 5.09514 5.10234 5.14135 5.22707 5.27762 5.31989 5.38290 5.45547 5.49132 5.50296 5.53153 5.55000 5.74338 6.23665 6.35495 6.94881 7.07778 7.31370 8.05500 8.28442 9.27111 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007265 B = 0.005140 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.196055 B = 5446.437017 C = 8339.511876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C 0.018 3.982 4 C -0.171 4.171 5 C -0.054 4.054 6 C 0.593 3.407 7 O -0.560 6.560 8 N -0.695 5.695 9 C 0.147 3.853 10 H 0.068 0.932 11 C 0.143 3.857 12 N -0.743 5.743 13 C -0.238 4.238 14 H 0.082 0.918 15 C -0.073 4.073 16 N -0.970 5.970 17 Si 0.970 3.030 18 H -0.262 1.262 19 H -0.295 1.295 20 H -0.300 1.300 21 C -0.092 4.092 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.128 4.128 26 N -0.271 5.271 27 C 0.063 3.937 28 N -0.285 5.285 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.405 0.595 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.370 0.630 39 H 0.248 0.752 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.555 -9.604 -12.136 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.201 4.201 5 C -0.182 4.182 6 C 0.379 3.621 7 O -0.438 6.438 8 N -0.351 5.351 9 C 0.042 3.958 10 H 0.087 0.913 11 C 0.016 3.984 12 N -0.385 5.385 13 C -0.370 4.370 14 H 0.100 0.900 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.222 1.222 20 H -0.228 1.228 21 C -0.112 4.112 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.165 4.165 26 N -0.060 5.060 27 C -0.076 4.076 28 N -0.119 5.119 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.185 0.815 35 H 0.247 0.753 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.284 -9.159 -12.465 19.147 hybrid contribution -0.906 0.544 1.132 1.549 sum 10.378 -8.615 -11.333 17.617 Atomic orbital electron populations 1.21692 0.94514 1.02688 1.01237 1.20018 0.96140 0.86450 1.04540 1.22540 0.99521 0.98032 0.93716 1.22274 1.02872 0.92117 1.02794 1.21795 1.03835 0.97698 0.94869 1.17064 0.79518 0.81658 0.83837 1.90757 1.49573 1.79955 1.23475 1.46179 1.55176 1.11338 1.22368 1.21294 0.91463 0.86251 0.96798 0.91333 1.21202 0.84806 0.94352 0.98029 1.42547 1.09031 1.10988 1.75981 1.19668 0.92298 0.91756 1.33234 0.90017 1.25522 0.99520 0.99106 1.02402 1.69856 1.18078 1.24314 1.49800 0.85123 0.78958 0.79448 0.76522 1.18577 1.22224 1.22790 1.22106 0.92999 0.99027 0.97087 1.22420 0.98626 1.01208 0.93167 1.22455 0.98336 0.95832 0.98575 1.22275 1.00925 0.97754 0.94584 1.22270 0.99549 0.96698 0.98030 1.45792 1.30756 1.09925 1.19565 1.22678 1.07529 0.80471 0.96934 1.72993 1.19596 0.92989 1.26309 0.94220 0.93354 0.89840 0.88921 0.88313 0.81479 0.75335 0.94544 0.93622 0.79821 0.94347 0.88788 0.92390 0.90149 0.90315 0.90769 0.91059 0.93570 0.91322 0.92989 0.86188 0.86420 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.88 71.98 0.71 -2.16 16 2 C -0.03 -0.66 6.51 29.85 0.19 -0.46 16 3 C 0.02 0.53 6.49 43.05 0.28 0.81 16 4 C -0.17 -5.45 10.78 22.66 0.24 -5.21 16 5 C -0.05 -1.87 6.96 40.79 0.28 -1.58 16 6 C 0.59 21.68 7.21 86.59 0.62 22.30 16 7 O -0.56 -23.64 14.70 -4.13 -0.06 -23.70 16 8 N -0.70 -21.92 3.22 -446.05 -1.44 -23.36 16 9 C 0.15 4.69 1.99 44.99 0.09 4.78 16 10 H 0.07 2.65 7.11 -2.38 -0.02 2.64 16 11 C 0.14 5.18 5.86 86.38 0.51 5.68 16 12 N -0.74 -35.98 5.43 -343.45 -1.87 -37.84 16 13 C -0.24 -12.67 9.99 84.03 0.84 -11.83 16 14 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 15 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 16 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 17 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 C -0.09 -2.22 2.76 -10.07 -0.03 -2.25 16 22 C -0.12 -2.27 5.36 31.67 0.17 -2.10 16 23 C -0.11 -1.91 6.91 31.89 0.22 -1.69 16 24 C -0.12 -2.40 6.83 31.67 0.22 -2.19 16 25 C -0.13 -3.15 6.25 31.32 0.20 -2.95 16 26 N -0.27 -8.36 3.75 -356.03 -1.33 -9.70 16 27 C 0.06 1.54 9.72 127.77 1.24 2.78 16 28 N -0.28 -8.82 11.87 -47.49 -0.56 -9.39 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.61 8.12 -2.39 -0.02 1.59 16 34 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.41 11.24 3.43 -92.71 -0.32 10.92 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.50 7.39 -2.39 -0.02 1.48 16 38 H 0.37 20.04 7.33 -92.71 -0.68 19.36 16 39 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.16 6.06 -2.38 -0.01 1.15 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.05 1.63 5.20 -2.39 -0.01 1.61 16 49 H 0.12 2.01 8.06 -2.39 -0.02 1.99 16 50 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.09 2.57 6.05 -2.39 -0.01 2.55 16 Total: -1.00 -71.79 400.69 3.24 -68.54 By element: Atomic # 1 Polarization: 46.98 SS G_CDS: -0.06 Total: 46.92 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 6.25 Total: 0.28 kcal Atomic # 7 Polarization: -134.55 SS G_CDS: -4.92 Total: -139.47 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.06 Total: -23.70 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.79 3.24 -68.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324508149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.026 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds