Wall clock time and date at job start Tue Mar 31 2020 19:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.50698 * 109.46986 * 120.00076 * 2 1 3 5 5 N 1.30442 * 125.99359 * 300.04033 * 4 2 1 6 6 N 1.39935 * 108.90061 * 179.97438 * 5 4 2 7 7 C 1.46498 * 125.75266 * 179.97438 * 6 5 4 8 8 C 1.34258 * 108.48986 * 359.75369 * 6 5 4 9 9 C 1.38045 * 107.41864 * 0.38880 * 8 6 5 10 10 C 1.47431 * 126.41601 * 179.86997 * 9 8 6 11 11 O 1.21603 * 119.99448 * 139.28678 * 10 9 8 12 12 N 1.34771 * 120.00055 * 319.28879 * 10 9 8 13 13 C 1.46919 * 120.63151 * 174.48353 * 12 10 9 14 14 C 1.53192 * 108.78029 * 126.41004 * 13 12 10 15 15 C 1.53044 * 109.31042 * 54.63418 * 14 13 12 16 16 C 1.53003 * 109.46020 * 178.62745 * 15 14 13 17 17 N 1.46505 * 109.45857 * 58.65709 * 15 14 13 18 18 C 1.36936 * 119.99832 * 179.97438 * 17 15 14 19 19 H 1.07990 * 120.00035 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47041 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47209 * 299.99629 * 22 20 18 25 25 H 1.48507 * 109.47006 * 59.99863 * 22 20 18 26 26 C 1.53041 * 109.52782 * 298.64514 * 15 14 13 27 27 C 1.46927 * 120.63341 * 354.50220 * 12 10 9 28 28 H 1.08995 * 109.46708 * 300.00173 * 1 2 3 29 29 H 1.09002 * 109.46799 * 59.99798 * 1 2 3 30 30 H 1.08996 * 109.47252 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46978 * 240.00512 * 2 1 3 32 32 H 1.09000 * 109.46814 * 60.00412 * 3 2 1 33 33 H 1.09000 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47449 * 300.00307 * 3 2 1 35 35 H 1.09000 * 109.46548 * 89.98223 * 7 6 5 36 36 H 1.09000 * 109.46616 * 209.97272 * 7 6 5 37 37 H 1.09000 * 109.47428 * 329.97913 * 7 6 5 38 38 H 1.07996 * 126.29319 * 180.24622 * 8 6 5 39 39 H 1.09002 * 109.58924 * 6.62480 * 13 12 10 40 40 H 1.09000 * 109.58752 * 246.19924 * 13 12 10 41 41 H 1.08999 * 109.49936 * 294.68899 * 14 13 12 42 42 H 1.08997 * 109.52781 * 174.60170 * 14 13 12 43 43 H 1.08994 * 109.47282 * 300.02908 * 16 15 14 44 44 H 1.09003 * 109.46726 * 60.03260 * 16 15 14 45 45 H 1.09003 * 109.46620 * 180.02562 * 16 15 14 46 46 H 0.97004 * 119.99886 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99982 * 0.02562 * 21 20 18 48 48 H 1.08995 * 109.49644 * 181.30552 * 26 15 14 49 49 H 1.08993 * 109.49579 * 301.40577 * 26 15 14 50 50 H 1.09009 * 109.58323 * 353.37615 * 27 12 10 51 51 H 1.09003 * 109.58698 * 113.79574 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7898 -0.3687 2.4657 6 7 2.4292 -1.2736 3.3203 7 6 2.4011 -1.2343 4.7845 8 6 3.0689 -2.1866 2.5721 9 6 2.8482 -1.8639 1.2482 10 6 3.3624 -2.5904 0.0729 11 8 2.6480 -2.7622 -0.8961 12 7 4.6242 -3.0641 0.0724 13 6 5.1123 -3.8926 -1.0384 14 6 6.4036 -3.2748 -1.5840 15 6 7.4056 -3.1039 -0.4398 16 6 8.7092 -2.5188 -0.9870 17 7 7.6748 -4.4075 0.1721 18 6 8.5474 -4.5035 1.2230 19 1 9.0375 -3.6184 1.6004 20 6 8.8029 -5.7388 1.8024 21 7 8.2059 -6.8178 1.3420 22 14 9.9927 -5.8697 3.2364 23 1 10.0901 -7.2863 3.6711 24 1 11.3322 -5.3880 2.8137 25 1 9.5011 -5.0388 4.3649 26 6 6.8239 -2.1571 0.6125 27 6 5.5376 -2.7622 1.1829 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.5547 -1.8175 5.1473 36 1 3.3269 -1.6548 5.1770 37 1 2.3006 -0.2016 5.1185 38 1 3.6511 -3.0191 2.9387 39 1 4.3611 -3.9251 -1.8276 40 1 5.3131 -4.9023 -0.6804 41 1 6.1841 -2.3019 -2.0236 42 1 6.8281 -3.9302 -2.3444 43 1 9.1239 -3.1932 -1.7361 44 1 8.5091 -1.5488 -1.4422 45 1 9.4231 -2.3974 -0.1722 46 1 7.2348 -5.2027 -0.1673 47 1 7.5877 -6.7498 0.5976 48 1 7.5472 -2.0175 1.4158 49 1 6.6003 -1.1948 0.1521 50 1 5.0669 -2.0488 1.8595 51 1 5.7731 -3.6797 1.7222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328049062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:05 Heat of formation + Delta-G solvation = 47.829690 kcal Electronic energy + Delta-G solvation = -30753.444981 eV Core-core repulsion = 26882.617055 eV Total energy + Delta-G solvation = -3870.827926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.57297 -39.59631 -37.68051 -35.88244 -34.53741 -32.77551 -32.43399 -31.21159 -29.92231 -28.72493 -27.78599 -27.17498 -26.95769 -24.02400 -23.36689 -23.02321 -22.41950 -21.59250 -19.96501 -19.02383 -18.39455 -17.16944 -16.88797 -16.35952 -15.73054 -15.43289 -15.17639 -14.80817 -14.62240 -14.41078 -14.12763 -13.64024 -13.57738 -13.53022 -13.47113 -13.34732 -12.89513 -12.74608 -12.56593 -12.54544 -12.23481 -12.08824 -11.60264 -11.50389 -11.36181 -11.25669 -11.22772 -11.03987 -10.85009 -10.77961 -10.66882 -10.51871 -10.25885 -10.00346 -9.85340 -9.55843 -9.36019 -9.11288 -8.96086 -8.60518 -8.17258 -7.05128 -6.11211 -3.11600 1.56540 2.23533 2.27479 3.24614 3.46393 3.49758 3.51366 3.67415 4.25006 4.54951 4.62783 4.73149 4.89531 4.93195 4.96819 5.14497 5.15702 5.22965 5.27163 5.33467 5.43008 5.48589 5.54760 5.56350 5.59328 5.60233 5.70575 5.76044 5.79074 5.87257 5.95122 6.00127 6.02277 6.13899 6.20722 6.20915 6.23822 6.34958 6.39478 6.45437 6.49634 6.52736 6.71111 6.77195 6.78394 6.97774 7.04118 7.55464 7.79315 7.81028 8.51627 8.73188 9.20185 10.06847 10.23220 11.36493 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.003698 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.137070 B = 7568.987240 C = 8620.286218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.020 4.020 3 C -0.141 4.141 4 C 0.133 3.867 5 N -0.298 5.298 6 N -0.365 5.365 7 C 0.098 3.902 8 C 0.099 3.901 9 C -0.277 4.277 10 C 0.593 3.407 11 O -0.552 6.552 12 N -0.596 5.596 13 C 0.119 3.881 14 C -0.130 4.130 15 C 0.203 3.797 16 C -0.149 4.149 17 N -0.728 5.728 18 C -0.321 4.321 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.945 5.945 22 Si 1.074 2.926 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.297 1.297 26 C -0.132 4.132 27 C 0.113 3.887 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.185 0.815 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.366 0.634 47 H 0.255 0.745 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 13.705 2.096 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.034 4.034 5 N -0.119 5.119 6 N -0.143 5.143 7 C -0.043 4.043 8 C -0.052 4.052 9 C -0.292 4.292 10 C 0.381 3.619 11 O -0.432 6.432 12 N -0.328 5.328 13 C -0.003 4.003 14 C -0.169 4.169 15 C 0.112 3.888 16 C -0.208 4.208 17 N -0.371 5.371 18 C -0.452 4.452 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.590 5.590 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.225 1.225 26 C -0.172 4.172 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.202 0.798 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.388 13.550 3.730 18.089 hybrid contribution -0.050 0.138 -1.332 1.340 sum -11.439 13.689 2.398 17.999 Atomic orbital electron populations 1.21749 0.93712 1.02198 1.01845 1.19732 0.96247 0.95294 0.92788 1.21811 1.01171 0.94818 1.02089 1.22255 0.94340 0.93476 0.93368 1.77061 1.20171 1.14653 1.00022 1.48269 1.38403 1.20686 1.06965 1.21968 1.03848 1.04871 0.73601 1.23180 0.96176 0.95016 0.90787 1.20193 1.12371 1.03801 0.92867 1.17302 0.81128 0.77769 0.85710 1.90708 1.57569 1.59267 1.35616 1.47946 1.11172 1.50887 1.22802 1.21521 0.95748 0.93895 0.89174 1.22101 0.95312 1.01129 0.98351 1.19467 0.91815 0.87216 0.90339 1.22194 0.99263 0.98555 1.00781 1.42516 1.53172 1.02689 1.38771 1.19907 1.20313 0.95639 1.09367 0.91816 1.25625 1.03168 0.91468 1.03954 1.70888 1.31058 1.29097 1.27986 0.83306 0.75224 0.75673 0.75192 1.21198 1.22431 1.22471 1.22251 0.96604 0.97807 1.00538 1.21856 0.89517 1.01226 0.88310 0.92404 0.92096 0.92428 0.88234 0.92218 0.92679 0.92018 0.90442 0.88932 0.88991 0.79810 0.89662 0.91113 0.91738 0.90969 0.93285 0.94548 0.92541 0.79926 0.93414 0.90812 0.93351 0.91089 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.02 -0.26 3.26 -91.77 -0.30 -0.56 16 3 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 4 C 0.13 1.93 5.77 -82.02 -0.47 1.45 16 5 N -0.30 -4.12 12.50 33.90 0.42 -3.70 16 6 N -0.36 -4.31 3.98 -67.60 -0.27 -4.58 16 7 C 0.10 0.69 11.44 59.85 0.68 1.38 16 8 C 0.10 1.27 9.11 -16.56 -0.15 1.12 16 9 C -0.28 -4.23 5.21 -105.06 -0.55 -4.77 16 10 C 0.59 10.19 7.33 -12.52 -0.09 10.10 16 11 O -0.55 -10.76 15.20 5.27 0.08 -10.68 16 12 N -0.60 -9.92 2.97 -174.05 -0.52 -10.44 16 13 C 0.12 2.00 6.17 -3.71 -0.02 1.98 16 14 C -0.13 -2.12 4.96 -26.61 -0.13 -2.26 16 15 C 0.20 3.71 0.74 -131.77 -0.10 3.61 16 16 C -0.15 -2.64 8.44 37.16 0.31 -2.33 16 17 N -0.73 -16.22 4.13 -47.19 -0.19 -16.41 16 18 C -0.32 -8.10 8.68 -15.06 -0.13 -8.23 16 19 H 0.06 1.60 6.70 -52.49 -0.35 1.25 16 20 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 21 N -0.94 -27.59 13.70 55.49 0.76 -26.83 16 22 Si 1.07 24.59 29.92 -169.99 -5.09 19.50 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.30 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.13 -2.24 4.70 -26.63 -0.13 -2.36 16 27 C 0.11 1.84 5.22 -3.73 -0.02 1.82 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.44 6.59 -51.93 -0.34 1.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.18 2.03 7.35 -52.49 -0.39 1.64 16 39 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 40 H 0.07 1.28 6.94 -51.93 -0.36 0.92 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16 46 H 0.37 8.65 5.29 -40.82 -0.22 8.44 16 47 H 0.25 7.34 6.77 -40.82 -0.28 7.06 16 48 H 0.07 1.33 7.31 -51.93 -0.38 0.95 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 1.03 4.81 -51.92 -0.25 0.78 16 51 H 0.08 1.58 7.74 -51.93 -0.40 1.18 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -32.00 396.37 -7.75 -39.76 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.42 Total: 10.13 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.51 Total: -2.73 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.20 Total: -61.96 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.09 Total: 19.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.00 -7.75 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328049062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.586 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds