Wall clock time and date at job start Tue Mar 31 2020 19:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.50698 * 109.46986 * 120.00076 * 2 1 3 5 5 N 1.30442 * 125.99359 * 300.04033 * 4 2 1 6 6 N 1.39935 * 108.90061 * 179.97438 * 5 4 2 7 7 C 1.46498 * 125.75266 * 179.97438 * 6 5 4 8 8 C 1.34258 * 108.48986 * 359.75369 * 6 5 4 9 9 C 1.38045 * 107.41864 * 0.38880 * 8 6 5 10 10 C 1.47431 * 126.41601 * 179.86997 * 9 8 6 11 11 O 1.21603 * 119.99448 * 139.28678 * 10 9 8 12 12 N 1.34771 * 120.00055 * 319.28879 * 10 9 8 13 13 C 1.46919 * 120.63151 * 174.48353 * 12 10 9 14 14 C 1.53192 * 108.78029 * 126.41004 * 13 12 10 15 15 C 1.53044 * 109.31042 * 54.63418 * 14 13 12 16 16 C 1.53003 * 109.46020 * 178.62745 * 15 14 13 17 17 N 1.46505 * 109.45857 * 58.65709 * 15 14 13 18 18 C 1.36936 * 119.99832 * 179.97438 * 17 15 14 19 19 H 1.07990 * 120.00035 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47041 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47209 * 299.99629 * 22 20 18 25 25 H 1.48507 * 109.47006 * 59.99863 * 22 20 18 26 26 C 1.53041 * 109.52782 * 298.64514 * 15 14 13 27 27 C 1.46927 * 120.63341 * 354.50220 * 12 10 9 28 28 H 1.08995 * 109.46708 * 300.00173 * 1 2 3 29 29 H 1.09002 * 109.46799 * 59.99798 * 1 2 3 30 30 H 1.08996 * 109.47252 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46978 * 240.00512 * 2 1 3 32 32 H 1.09000 * 109.46814 * 60.00412 * 3 2 1 33 33 H 1.09000 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47449 * 300.00307 * 3 2 1 35 35 H 1.09000 * 109.46548 * 89.98223 * 7 6 5 36 36 H 1.09000 * 109.46616 * 209.97272 * 7 6 5 37 37 H 1.09000 * 109.47428 * 329.97913 * 7 6 5 38 38 H 1.07996 * 126.29319 * 180.24622 * 8 6 5 39 39 H 1.09002 * 109.58924 * 6.62480 * 13 12 10 40 40 H 1.09000 * 109.58752 * 246.19924 * 13 12 10 41 41 H 1.08999 * 109.49936 * 294.68899 * 14 13 12 42 42 H 1.08997 * 109.52781 * 174.60170 * 14 13 12 43 43 H 1.08994 * 109.47282 * 300.02908 * 16 15 14 44 44 H 1.09003 * 109.46726 * 60.03260 * 16 15 14 45 45 H 1.09003 * 109.46620 * 180.02562 * 16 15 14 46 46 H 0.97004 * 119.99886 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99982 * 0.02562 * 21 20 18 48 48 H 1.08995 * 109.49644 * 181.30552 * 26 15 14 49 49 H 1.08993 * 109.49579 * 301.40577 * 26 15 14 50 50 H 1.09009 * 109.58323 * 353.37615 * 27 12 10 51 51 H 1.09003 * 109.58698 * 113.79574 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7898 -0.3687 2.4657 6 7 2.4292 -1.2736 3.3203 7 6 2.4011 -1.2343 4.7845 8 6 3.0689 -2.1866 2.5721 9 6 2.8482 -1.8639 1.2482 10 6 3.3624 -2.5904 0.0729 11 8 2.6480 -2.7622 -0.8961 12 7 4.6242 -3.0641 0.0724 13 6 5.1123 -3.8926 -1.0384 14 6 6.4036 -3.2748 -1.5840 15 6 7.4056 -3.1039 -0.4398 16 6 8.7092 -2.5188 -0.9870 17 7 7.6748 -4.4075 0.1721 18 6 8.5474 -4.5035 1.2230 19 1 9.0375 -3.6184 1.6004 20 6 8.8029 -5.7388 1.8024 21 7 8.2059 -6.8178 1.3420 22 14 9.9927 -5.8697 3.2364 23 1 10.0901 -7.2863 3.6711 24 1 11.3322 -5.3880 2.8137 25 1 9.5011 -5.0388 4.3649 26 6 6.8239 -2.1571 0.6125 27 6 5.5376 -2.7622 1.1829 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.5547 -1.8175 5.1473 36 1 3.3269 -1.6548 5.1770 37 1 2.3006 -0.2016 5.1185 38 1 3.6511 -3.0191 2.9387 39 1 4.3611 -3.9251 -1.8276 40 1 5.3131 -4.9023 -0.6804 41 1 6.1841 -2.3019 -2.0236 42 1 6.8281 -3.9302 -2.3444 43 1 9.1239 -3.1932 -1.7361 44 1 8.5091 -1.5488 -1.4422 45 1 9.4231 -2.3974 -0.1722 46 1 7.2348 -5.2027 -0.1673 47 1 7.5877 -6.7498 0.5976 48 1 7.5472 -2.0175 1.4158 49 1 6.6003 -1.1948 0.1521 50 1 5.0669 -2.0488 1.8595 51 1 5.7731 -3.6797 1.7222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328049062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:59 Heat of formation + Delta-G solvation = 28.928398 kcal Electronic energy + Delta-G solvation = -30754.264603 eV Core-core repulsion = 26882.617055 eV Total energy + Delta-G solvation = -3871.647548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -42.62328 -40.95142 -39.13352 -36.84778 -36.09907 -34.41718 -33.43601 -32.50308 -31.11829 -30.48762 -29.15319 -28.04062 -27.83650 -25.76580 -24.81714 -24.37424 -23.44925 -22.77002 -21.24151 -20.23578 -19.71618 -18.89962 -18.23646 -17.53619 -16.81022 -16.69803 -16.61402 -15.98490 -15.80296 -15.66045 -15.47158 -15.34053 -15.02865 -14.71791 -14.51930 -14.35487 -14.12120 -13.96514 -13.64425 -13.53558 -13.30690 -13.23734 -12.97051 -12.79889 -12.71769 -12.58502 -12.43383 -12.25856 -12.16477 -12.12380 -11.98262 -11.88972 -11.75092 -11.63946 -11.43661 -10.93489 -10.89681 -10.80073 -10.33528 -9.75895 -9.51538 -8.95459 -8.21530 -5.15438 0.52487 1.12055 1.41204 1.62842 1.71174 1.86828 1.96634 2.23179 2.78762 3.29617 3.54037 3.59211 3.67973 3.75847 3.90075 3.93227 4.03688 4.11691 4.14633 4.22922 4.25620 4.35443 4.40590 4.42993 4.54452 4.57480 4.59864 4.64610 4.68347 4.75584 4.78349 4.82280 4.93227 4.93641 4.94191 4.98521 5.03751 5.08147 5.09874 5.26058 5.29045 5.31124 5.32652 5.50159 5.51016 5.64494 5.78793 5.86327 6.43917 6.56865 6.64599 7.18052 7.23641 8.14825 8.28168 9.29895 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.003698 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.137070 B = 7568.987240 C = 8620.286218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.024 4.024 3 C -0.133 4.133 4 C 0.124 3.876 5 N -0.309 5.309 6 N -0.357 5.357 7 C 0.086 3.914 8 C 0.108 3.892 9 C -0.309 4.309 10 C 0.593 3.407 11 O -0.581 6.581 12 N -0.595 5.595 13 C 0.122 3.878 14 C -0.121 4.121 15 C 0.194 3.806 16 C -0.143 4.143 17 N -0.734 5.734 18 C -0.298 4.298 19 H 0.068 0.932 20 C -0.105 4.105 21 N -0.983 5.983 22 Si 1.116 2.884 23 H -0.303 1.303 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.126 4.126 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.201 0.799 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.358 0.642 47 H 0.243 0.757 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.408 16.020 3.210 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.044 4.044 3 C -0.191 4.191 4 C -0.043 4.043 5 N -0.131 5.131 6 N -0.134 5.134 7 C -0.053 4.053 8 C -0.044 4.044 9 C -0.324 4.324 10 C 0.383 3.617 11 O -0.463 6.463 12 N -0.326 5.326 13 C -0.001 4.001 14 C -0.159 4.159 15 C 0.104 3.896 16 C -0.202 4.202 17 N -0.377 5.377 18 C -0.430 4.430 19 H 0.086 0.914 20 C -0.296 4.296 21 N -0.633 5.633 22 Si 0.944 3.056 23 H -0.229 1.229 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.166 4.166 27 C 0.002 3.998 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.218 0.782 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.190 0.810 47 H 0.053 0.947 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.110 0.890 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.533 15.942 4.857 20.267 hybrid contribution -0.056 -0.516 -1.669 1.748 sum -11.589 15.426 3.187 19.556 Atomic orbital electron populations 1.21700 0.92664 1.01498 1.02977 1.19772 0.97128 0.96074 0.91456 1.21751 1.00599 0.93612 1.03111 1.22488 0.94229 0.93461 0.94084 1.77020 1.20670 1.15401 0.99962 1.48674 1.36845 1.19491 1.08424 1.22405 1.05825 1.06217 0.70807 1.23365 0.95712 0.95168 0.90188 1.20160 1.14303 1.04897 0.93069 1.17593 0.80767 0.77347 0.85975 1.90683 1.58179 1.60442 1.36967 1.47950 1.11261 1.50717 1.22715 1.21421 0.96101 0.93231 0.89329 1.22019 0.94264 1.01991 0.97625 1.19755 0.92837 0.85719 0.91245 1.22115 0.98163 0.99839 1.00067 1.42669 1.52593 1.04010 1.38404 1.20143 1.18859 0.95243 1.08778 0.91449 1.26759 1.04864 0.91644 1.06351 1.70991 1.32956 1.30295 1.29026 0.82735 0.74239 0.74969 0.73654 1.22942 1.21267 1.20220 1.22176 0.96455 0.98186 0.99830 1.21716 0.89420 1.00393 0.88241 0.92029 0.90149 0.94006 0.90314 0.91996 0.93448 0.90139 0.88888 0.86637 0.87895 0.78206 0.89666 0.92930 0.90084 0.90674 0.94185 0.91606 0.94051 0.80958 0.94694 0.91648 0.91509 0.88967 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.18 71.98 0.66 -2.15 16 2 C -0.02 -0.59 3.26 -11.54 -0.04 -0.63 16 3 C -0.13 -2.68 9.18 71.98 0.66 -2.02 16 4 C 0.12 3.49 5.77 43.52 0.25 3.74 16 5 N -0.31 -8.04 12.50 -46.68 -0.58 -8.63 16 6 N -0.36 -7.63 3.98 -367.79 -1.46 -9.09 16 7 C 0.09 0.96 11.44 127.77 1.46 2.42 16 8 C 0.11 2.59 9.11 84.28 0.77 3.36 16 9 C -0.31 -9.18 5.21 -20.15 -0.10 -9.29 16 10 C 0.59 20.32 7.33 86.67 0.64 20.96 16 11 O -0.58 -22.96 15.20 -4.04 -0.06 -23.02 16 12 N -0.60 -19.58 2.97 -822.84 -2.45 -22.02 16 13 C 0.12 4.12 6.17 86.36 0.53 4.65 16 14 C -0.12 -3.81 4.96 30.67 0.15 -3.65 16 15 C 0.19 6.88 0.74 3.63 0.00 6.88 16 16 C -0.14 -4.82 8.44 71.98 0.61 -4.21 16 17 N -0.73 -32.77 4.13 -303.21 -1.25 -34.02 16 18 C -0.30 -14.95 8.68 84.03 0.73 -14.22 16 19 H 0.07 3.30 6.70 -2.92 -0.02 3.28 16 20 C -0.11 -5.68 5.50 84.86 0.47 -5.22 16 21 N -0.98 -58.69 13.70 21.65 0.30 -58.39 16 22 Si 1.12 49.42 29.92 68.60 2.05 51.48 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.13 -4.08 4.70 30.66 0.14 -3.93 16 27 C 0.12 3.92 5.22 86.35 0.45 4.37 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 2.29 6.59 -2.39 -0.02 2.27 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.20 4.03 7.35 -2.91 -0.02 4.01 16 39 H 0.08 2.88 7.00 -2.39 -0.02 2.86 16 40 H 0.05 1.96 6.94 -2.39 -0.02 1.95 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.50 7.27 -2.39 -0.02 1.49 16 46 H 0.36 17.29 5.29 -92.71 -0.49 16.80 16 47 H 0.24 14.48 6.77 -92.71 -0.63 13.85 16 48 H 0.06 2.23 7.31 -2.39 -0.02 2.22 16 49 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.09 2.51 4.81 -2.38 -0.01 2.50 16 51 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 Total: -1.00 -69.61 396.37 4.50 -65.11 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.58 Total: 37.51 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 7.38 Total: 1.07 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -5.45 Total: -132.15 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.48 kcal Total: -69.61 4.50 -65.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328049062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.041 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds