Wall clock time and date at job start Tue Mar 31 2020 20:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99824 * 2 1 4 4 O 1.21604 * 120.00160 * 185.39141 * 3 2 1 5 5 C 1.47428 * 120.00208 * 5.38639 * 3 2 1 6 6 C 1.38047 * 126.41314 * 44.94247 * 5 3 2 7 7 N 1.34258 * 107.41598 * 179.87120 * 6 5 3 8 8 H 0.97003 * 125.75233 * 180.10957 * 7 6 5 9 9 N 1.39937 * 108.49289 * 0.39519 * 7 6 5 10 10 C 1.30448 * 108.89608 * 359.75252 * 9 7 6 11 11 C 1.50702 * 125.98670 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46646 * 231.46344 * 11 10 9 13 13 C 1.52994 * 109.47106 * 351.46443 * 11 10 9 14 14 C 1.53000 * 109.47223 * 111.46722 * 11 10 9 15 15 C 1.46492 * 120.00155 * 179.97438 * 2 1 3 16 16 H 1.09007 * 109.47119 * 180.02562 * 15 2 1 17 17 C 1.52998 * 109.47067 * 300.00058 * 15 2 1 18 18 N 1.46497 * 109.47560 * 305.00202 * 17 15 2 19 19 C 1.36936 * 120.00232 * 179.72813 * 18 17 15 20 20 H 1.07995 * 120.00169 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99607 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00198 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99591 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47113 * 89.99690 * 23 21 19 25 25 H 1.48495 * 109.47210 * 210.00059 * 23 21 19 26 26 H 1.48503 * 109.47459 * 330.00103 * 23 21 19 27 27 C 1.52998 * 109.47156 * 60.00255 * 15 2 1 28 28 C 1.53006 * 117.49785 * 248.74703 * 27 15 2 29 29 C 1.53008 * 117.49784 * 180.08768 * 27 15 2 30 30 H 1.08997 * 109.47633 * 275.17966 * 1 2 3 31 31 H 1.09007 * 109.46908 * 35.18250 * 1 2 3 32 32 H 1.09001 * 109.46867 * 155.17510 * 1 2 3 33 33 H 1.07994 * 126.28905 * 0.02562 * 6 5 3 34 34 H 1.08999 * 109.47150 * 58.38851 * 12 11 10 35 35 H 1.08999 * 109.47135 * 178.38952 * 12 11 10 36 36 H 1.09003 * 109.47309 * 298.39184 * 12 11 10 37 37 H 1.08992 * 109.47346 * 60.00447 * 13 11 10 38 38 H 1.09005 * 109.47208 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.47293 * 300.00024 * 13 11 10 40 40 H 1.09003 * 109.47326 * 62.84496 * 14 11 10 41 41 H 1.08997 * 109.46870 * 182.84583 * 14 11 10 42 42 H 1.09001 * 109.46984 * 302.84506 * 14 11 10 43 43 H 1.09000 * 109.47151 * 184.99963 * 17 15 2 44 44 H 1.09001 * 109.47274 * 64.99977 * 17 15 2 45 45 H 0.97010 * 119.99793 * 359.97438 * 18 17 15 46 46 H 0.96999 * 119.99470 * 179.97438 * 22 21 19 47 47 H 1.09000 * 115.55271 * 34.41989 * 27 15 2 48 48 H 1.09002 * 117.49804 * 0.02562 * 28 27 15 49 49 H 1.08996 * 117.49839 * 145.02011 * 28 27 15 50 50 H 1.08999 * 117.49856 * 214.97761 * 29 27 15 51 51 H 1.08995 * 117.49590 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3508 1.1696 -0.0989 5 6 1.4066 2.4412 0.1198 6 6 0.3839 2.7184 1.0047 7 7 -0.0025 3.9858 0.7879 8 1 -0.7048 4.4539 1.2661 9 7 0.7742 4.5155 -0.2486 10 6 1.6159 3.6050 -0.6536 11 6 2.6337 3.7663 -1.7532 12 6 2.4974 2.6115 -2.7476 13 6 2.3967 5.0932 -2.4768 14 6 4.0404 3.7576 -1.1514 15 6 2.1975 -1.2686 0.0006 16 1 3.2692 -1.0694 0.0009 17 6 1.8278 -2.0704 1.2501 18 7 2.0705 -1.2552 2.4430 19 6 1.8053 -1.7647 3.6860 20 1 1.4169 -2.7673 3.7871 21 6 2.0348 -0.9920 4.8162 22 7 2.5077 0.2301 4.6930 23 14 1.6724 -1.6867 6.5119 24 1 2.8828 -2.3689 7.0364 25 1 1.2904 -0.5823 7.4281 26 1 0.5560 -2.6616 6.4193 27 6 1.8279 -2.0715 -1.2483 28 6 1.0115 -3.3503 -1.0502 29 6 2.4914 -3.4379 -1.4317 30 1 -0.3634 0.0928 1.0234 31 1 -0.3633 0.8400 -0.5922 32 1 -0.3633 -0.9327 -0.4315 33 1 -0.0278 2.0412 1.7382 34 1 1.4864 2.6003 -3.1549 35 1 3.2142 2.7434 -3.5580 36 1 2.6943 1.6682 -2.2382 37 1 2.4938 5.9158 -1.7684 38 1 3.1326 5.2097 -3.2725 39 1 1.3946 5.0994 -2.9055 40 1 4.2278 2.7931 -0.6794 41 1 4.7739 3.9248 -1.9401 42 1 4.1215 4.5488 -0.4060 43 1 2.4376 -2.9727 1.2965 44 1 0.7741 -2.3458 1.2066 45 1 2.4157 -0.3532 2.3520 46 1 2.6677 0.7701 5.4827 47 1 1.6318 -1.4830 -2.1446 48 1 0.7374 -3.6193 -0.0301 49 1 0.2786 -3.6032 -1.8162 50 1 2.7314 -3.7485 -2.4486 51 1 3.1915 -3.7647 -0.6628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331348266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:42 Heat of formation + Delta-G solvation = 77.565879 kcal Electronic energy + Delta-G solvation = -31114.955539 eV Core-core repulsion = 27245.417070 eV Total energy + Delta-G solvation = -3869.538469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40571 -39.45183 -37.58761 -36.58608 -34.83290 -33.96080 -31.30991 -30.80649 -30.16614 -27.96310 -27.08657 -26.96078 -26.33498 -24.45146 -22.67183 -22.54649 -22.35015 -21.86518 -19.93947 -18.75872 -18.11570 -17.61118 -17.06702 -16.43046 -16.06822 -15.20230 -14.88775 -14.79723 -14.63616 -14.43181 -14.17368 -13.74250 -13.56665 -13.37575 -13.14243 -12.90416 -12.87785 -12.47982 -12.27098 -12.10448 -11.93959 -11.88830 -11.49940 -11.39662 -11.25410 -11.12760 -11.02973 -11.00669 -10.84709 -10.82087 -10.73526 -10.36637 -10.18822 -10.10035 -9.72382 -9.69328 -9.36154 -9.24798 -8.86669 -8.50562 -8.13381 -6.90683 -5.74869 -3.04089 1.84763 2.43769 2.83872 3.38231 3.41770 3.47158 3.48530 3.55696 4.01982 4.51868 4.57758 4.82296 4.90403 5.06451 5.13587 5.14897 5.16296 5.17747 5.33755 5.48424 5.50449 5.56371 5.59387 5.72589 5.74033 5.77720 5.78301 5.86550 5.91151 5.91665 5.97558 6.05529 6.07055 6.10211 6.19129 6.20532 6.22605 6.29479 6.31787 6.41241 6.47644 6.49534 6.62437 6.71830 6.84039 7.11925 7.26152 7.68876 7.70479 7.88523 8.42456 8.73967 9.54261 10.13131 10.48748 11.46843 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.004632 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.075527 B = 6043.050362 C = 7759.880470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.591 5.591 3 C 0.603 3.397 4 O -0.532 6.532 5 C -0.273 4.273 6 C 0.113 3.887 7 N -0.468 5.468 8 H 0.441 0.559 9 N -0.301 5.301 10 C 0.137 3.863 11 C 0.016 3.984 12 C -0.140 4.140 13 C -0.135 4.135 14 C -0.156 4.156 15 C 0.163 3.837 16 H 0.105 0.895 17 C 0.143 3.857 18 N -0.727 5.727 19 C -0.239 4.239 20 H 0.068 0.932 21 C -0.011 4.011 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.283 1.283 27 C -0.157 4.157 28 C -0.186 4.186 29 C -0.173 4.173 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.189 0.811 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.025 0.975 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 3.491 -15.695 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.323 5.323 3 C 0.392 3.608 4 O -0.410 6.410 5 C -0.288 4.288 6 C -0.039 4.039 7 N -0.173 5.173 8 H 0.285 0.715 9 N -0.123 5.123 10 C -0.031 4.031 11 C 0.014 3.986 12 C -0.198 4.198 13 C -0.192 4.192 14 C -0.214 4.214 15 C 0.060 3.940 16 H 0.122 0.878 17 C 0.015 3.985 18 N -0.372 5.372 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.576 5.576 23 Si 0.734 3.266 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.176 4.176 28 C -0.223 4.223 29 C -0.211 4.211 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.206 0.794 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.892 4.585 -15.760 17.439 hybrid contribution -0.460 -0.659 1.658 1.843 sum -6.352 3.927 -14.101 15.957 Atomic orbital electron populations 1.21706 0.80207 1.02169 1.01760 1.47444 1.06569 1.05145 1.73127 1.17166 0.86363 0.82231 0.75066 1.90624 1.13533 1.86464 1.50385 1.20115 1.05152 0.97269 1.06242 1.23290 0.94721 0.87391 0.98472 1.46047 1.31238 1.10467 1.29502 0.71498 1.77032 1.08971 1.21740 1.04562 1.22245 0.94904 0.89664 0.96277 1.18983 0.92479 0.96318 0.90821 1.21911 1.01178 0.98469 0.98281 1.21801 1.01324 0.96194 0.99902 1.22195 0.93054 1.05606 1.00558 1.20811 0.97988 0.82360 0.92863 0.87756 1.21120 0.97688 0.93517 0.86184 1.42304 1.78675 1.15860 1.00321 1.19189 1.36023 0.98098 0.83713 0.91362 1.24717 1.02112 0.96343 0.97595 1.69688 1.50910 1.08765 1.28287 0.86256 0.77843 0.77651 0.84810 1.21751 1.21905 1.20863 1.22593 1.05383 0.90032 0.99606 1.23202 0.94037 1.01696 1.03315 1.22946 0.96040 0.99678 1.02394 0.92317 0.92136 0.91061 0.79437 0.93134 0.92044 0.91205 0.92243 0.92502 0.92723 0.87912 0.92733 0.93282 0.95581 0.95693 0.77965 0.93616 0.87891 0.87538 0.89388 0.89121 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 8.34 59.84 0.50 1.63 16 2 N -0.59 -9.55 2.24 -175.21 -0.39 -9.94 16 3 C 0.60 10.86 5.44 -12.52 -0.07 10.79 16 4 O -0.53 -10.99 12.19 5.27 0.06 -10.93 16 5 C -0.27 -4.46 4.82 -105.06 -0.51 -4.96 16 6 C 0.11 1.61 10.31 -16.56 -0.17 1.44 16 7 N -0.47 -5.87 7.29 30.85 0.22 -5.64 16 8 H 0.44 3.91 8.96 -182.72 -1.64 2.27 16 9 N -0.30 -4.46 11.94 33.90 0.40 -4.05 16 10 C 0.14 2.13 5.65 -82.02 -0.46 1.67 16 11 C 0.02 0.22 0.77 -155.66 -0.12 0.10 16 12 C -0.14 -1.81 8.21 37.16 0.31 -1.50 16 13 C -0.13 -1.59 7.98 37.15 0.30 -1.29 16 14 C -0.16 -2.32 8.37 37.16 0.31 -2.01 16 15 C 0.16 2.73 2.58 -67.94 -0.18 2.56 16 16 H 0.10 2.02 6.91 -51.92 -0.36 1.67 16 17 C 0.14 2.77 4.19 -4.04 -0.02 2.75 16 18 N -0.73 -18.03 5.43 -59.91 -0.33 -18.35 16 19 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 23 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C -0.16 -2.06 4.99 -90.61 -0.45 -2.51 16 28 C -0.19 -2.18 9.45 -26.69 -0.25 -2.43 16 29 C -0.17 -2.06 9.94 -26.69 -0.27 -2.32 16 30 H 0.06 0.84 7.25 -51.93 -0.38 0.46 16 31 H 0.06 0.71 6.86 -51.93 -0.36 0.36 16 32 H 0.07 0.85 7.16 -51.93 -0.37 0.48 16 33 H 0.19 2.53 7.08 -52.49 -0.37 2.16 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.04 5.28 -51.93 -0.27 0.76 16 37 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.82 4.77 -51.93 -0.25 1.58 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 44 H 0.03 0.47 6.30 -51.93 -0.33 0.15 16 45 H 0.39 10.43 7.06 -40.82 -0.29 10.15 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 48 H 0.11 1.38 5.80 -51.93 -0.30 1.08 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.10 1.24 7.66 -51.93 -0.40 0.85 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -32.81 395.61 -9.15 -41.96 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -9.47 Total: 14.19 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.32 Total: -3.19 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: 0.64 Total: -65.09 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.06 Total: -10.93 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.81 -9.15 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331348266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.529 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds