Wall clock time and date at job start Tue Mar 31 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99824 * 2 1 4 4 O 1.21604 * 120.00160 * 185.39141 * 3 2 1 5 5 C 1.47428 * 120.00208 * 5.38639 * 3 2 1 6 6 C 1.38047 * 126.41314 * 44.94247 * 5 3 2 7 7 N 1.34258 * 107.41598 * 179.87120 * 6 5 3 8 8 H 0.97003 * 125.75233 * 180.10957 * 7 6 5 9 9 N 1.39937 * 108.49289 * 0.39519 * 7 6 5 10 10 C 1.30448 * 108.89608 * 359.75252 * 9 7 6 11 11 C 1.50702 * 125.98670 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46646 * 231.46344 * 11 10 9 13 13 C 1.52994 * 109.47106 * 351.46443 * 11 10 9 14 14 C 1.53000 * 109.47223 * 111.46722 * 11 10 9 15 15 C 1.46492 * 120.00155 * 179.97438 * 2 1 3 16 16 H 1.09007 * 109.47119 * 180.02562 * 15 2 1 17 17 C 1.52998 * 109.47067 * 300.00058 * 15 2 1 18 18 N 1.46497 * 109.47560 * 305.00202 * 17 15 2 19 19 C 1.36936 * 120.00232 * 179.72813 * 18 17 15 20 20 H 1.07995 * 120.00169 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99607 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00198 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99591 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47113 * 89.99690 * 23 21 19 25 25 H 1.48495 * 109.47210 * 210.00059 * 23 21 19 26 26 H 1.48503 * 109.47459 * 330.00103 * 23 21 19 27 27 C 1.52998 * 109.47156 * 60.00255 * 15 2 1 28 28 C 1.53006 * 117.49785 * 248.74703 * 27 15 2 29 29 C 1.53008 * 117.49784 * 180.08768 * 27 15 2 30 30 H 1.08997 * 109.47633 * 275.17966 * 1 2 3 31 31 H 1.09007 * 109.46908 * 35.18250 * 1 2 3 32 32 H 1.09001 * 109.46867 * 155.17510 * 1 2 3 33 33 H 1.07994 * 126.28905 * 0.02562 * 6 5 3 34 34 H 1.08999 * 109.47150 * 58.38851 * 12 11 10 35 35 H 1.08999 * 109.47135 * 178.38952 * 12 11 10 36 36 H 1.09003 * 109.47309 * 298.39184 * 12 11 10 37 37 H 1.08992 * 109.47346 * 60.00447 * 13 11 10 38 38 H 1.09005 * 109.47208 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.47293 * 300.00024 * 13 11 10 40 40 H 1.09003 * 109.47326 * 62.84496 * 14 11 10 41 41 H 1.08997 * 109.46870 * 182.84583 * 14 11 10 42 42 H 1.09001 * 109.46984 * 302.84506 * 14 11 10 43 43 H 1.09000 * 109.47151 * 184.99963 * 17 15 2 44 44 H 1.09001 * 109.47274 * 64.99977 * 17 15 2 45 45 H 0.97010 * 119.99793 * 359.97438 * 18 17 15 46 46 H 0.96999 * 119.99470 * 179.97438 * 22 21 19 47 47 H 1.09000 * 115.55271 * 34.41989 * 27 15 2 48 48 H 1.09002 * 117.49804 * 0.02562 * 28 27 15 49 49 H 1.08996 * 117.49839 * 145.02011 * 28 27 15 50 50 H 1.08999 * 117.49856 * 214.97761 * 29 27 15 51 51 H 1.08995 * 117.49590 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3508 1.1696 -0.0989 5 6 1.4066 2.4412 0.1198 6 6 0.3839 2.7184 1.0047 7 7 -0.0025 3.9858 0.7879 8 1 -0.7048 4.4539 1.2661 9 7 0.7742 4.5155 -0.2486 10 6 1.6159 3.6050 -0.6536 11 6 2.6337 3.7663 -1.7532 12 6 2.4974 2.6115 -2.7476 13 6 2.3967 5.0932 -2.4768 14 6 4.0404 3.7576 -1.1514 15 6 2.1975 -1.2686 0.0006 16 1 3.2692 -1.0694 0.0009 17 6 1.8278 -2.0704 1.2501 18 7 2.0705 -1.2552 2.4430 19 6 1.8053 -1.7647 3.6860 20 1 1.4169 -2.7673 3.7871 21 6 2.0348 -0.9920 4.8162 22 7 2.5077 0.2301 4.6930 23 14 1.6724 -1.6867 6.5119 24 1 2.8828 -2.3689 7.0364 25 1 1.2904 -0.5823 7.4281 26 1 0.5560 -2.6616 6.4193 27 6 1.8279 -2.0715 -1.2483 28 6 1.0115 -3.3503 -1.0502 29 6 2.4914 -3.4379 -1.4317 30 1 -0.3634 0.0928 1.0234 31 1 -0.3633 0.8400 -0.5922 32 1 -0.3633 -0.9327 -0.4315 33 1 -0.0278 2.0412 1.7382 34 1 1.4864 2.6003 -3.1549 35 1 3.2142 2.7434 -3.5580 36 1 2.6943 1.6682 -2.2382 37 1 2.4938 5.9158 -1.7684 38 1 3.1326 5.2097 -3.2725 39 1 1.3946 5.0994 -2.9055 40 1 4.2278 2.7931 -0.6794 41 1 4.7739 3.9248 -1.9401 42 1 4.1215 4.5488 -0.4060 43 1 2.4376 -2.9727 1.2965 44 1 0.7741 -2.3458 1.2066 45 1 2.4157 -0.3532 2.3520 46 1 2.6677 0.7701 5.4827 47 1 1.6318 -1.4830 -2.1446 48 1 0.7374 -3.6193 -0.0301 49 1 0.2786 -3.6032 -1.8162 50 1 2.7314 -3.7485 -2.4486 51 1 3.1915 -3.7647 -0.6628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331348266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:40 Heat of formation + Delta-G solvation = 57.132133 kcal Electronic energy + Delta-G solvation = -31115.841612 eV Core-core repulsion = 27245.417070 eV Total energy + Delta-G solvation = -3870.424542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.57083 -40.74044 -38.82833 -37.65866 -36.31388 -35.62915 -33.12865 -31.94789 -31.52570 -29.43408 -28.12849 -28.01646 -27.61640 -26.15496 -24.23739 -23.67964 -23.46645 -23.03940 -21.12902 -20.13914 -19.23136 -19.00295 -18.80607 -17.75173 -17.37691 -16.48016 -16.37800 -16.08337 -15.88770 -15.78765 -15.33295 -15.00923 -14.94550 -14.71319 -14.67342 -14.44426 -14.13762 -13.77980 -13.55609 -13.16291 -13.04446 -12.97920 -12.93809 -12.89406 -12.72669 -12.48743 -12.28756 -12.26350 -12.20154 -12.06145 -11.95169 -11.90872 -11.73873 -11.42589 -11.24938 -10.95895 -10.85389 -10.55099 -10.47713 -9.72233 -9.42962 -8.96088 -7.90579 -5.19896 0.67318 1.21164 1.46681 1.48851 1.56548 1.78904 2.14769 2.26444 2.56738 2.99594 3.41062 3.42372 3.70013 3.74503 3.91793 4.05843 4.09503 4.11135 4.13659 4.18537 4.32218 4.34663 4.43413 4.47217 4.55629 4.60522 4.68473 4.80117 4.80972 4.83050 4.87541 4.93368 4.95180 4.99034 5.02504 5.07902 5.10841 5.11980 5.21408 5.23358 5.30694 5.37866 5.44364 5.50019 5.51421 5.57715 5.83545 6.27579 6.28524 6.53118 6.63709 7.35740 7.40821 8.12134 8.36127 9.31827 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.004632 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.075527 B = 6043.050362 C = 7759.880470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.589 5.589 3 C 0.597 3.403 4 O -0.569 6.569 5 C -0.298 4.298 6 C 0.120 3.880 7 N -0.450 5.450 8 H 0.457 0.543 9 N -0.308 5.308 10 C 0.129 3.871 11 C 0.013 3.987 12 C -0.134 4.134 13 C -0.127 4.127 14 C -0.152 4.152 15 C 0.172 3.828 16 H 0.069 0.931 17 C 0.147 3.853 18 N -0.739 5.739 19 C -0.239 4.239 20 H 0.077 0.923 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.294 1.294 25 H -0.297 1.297 26 H -0.266 1.266 27 C -0.162 4.162 28 C -0.170 4.170 29 C -0.170 4.170 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.195 0.805 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.024 0.976 44 H 0.042 0.958 45 H 0.372 0.628 46 H 0.248 0.752 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.115 0.885 50 H 0.114 0.886 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 2.795 -17.133 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.320 5.320 3 C 0.387 3.613 4 O -0.450 6.450 5 C -0.313 4.313 6 C -0.033 4.033 7 N -0.156 5.156 8 H 0.305 0.695 9 N -0.130 5.130 10 C -0.039 4.039 11 C 0.011 3.989 12 C -0.191 4.191 13 C -0.184 4.184 14 C -0.210 4.210 15 C 0.068 3.932 16 H 0.087 0.913 17 C 0.019 3.981 18 N -0.382 5.382 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.263 4.263 22 N -0.617 5.617 23 Si 0.798 3.202 24 H -0.221 1.221 25 H -0.224 1.224 26 H -0.191 1.191 27 C -0.182 4.182 28 C -0.206 4.206 29 C -0.207 4.207 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.212 0.788 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.204 0.796 46 H 0.056 0.944 47 H 0.132 0.868 48 H 0.112 0.888 49 H 0.133 0.867 50 H 0.132 0.868 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.828 3.856 -17.218 19.303 hybrid contribution 0.131 -0.489 2.097 2.157 sum -7.697 3.367 -15.122 17.299 Atomic orbital electron populations 1.21829 0.78327 1.03930 1.01582 1.47504 1.07681 1.04455 1.72332 1.17481 0.86095 0.83183 0.74534 1.90610 1.15156 1.87071 1.52163 1.20147 1.06246 0.97131 1.07760 1.23323 0.94136 0.87983 0.97850 1.46053 1.30967 1.09865 1.28738 0.69477 1.76992 1.09225 1.21698 1.05109 1.22529 0.95334 0.89329 0.96746 1.19081 0.91195 0.97882 0.90775 1.21841 1.02248 0.96845 0.98206 1.21735 1.02246 0.94445 0.99985 1.22113 0.94731 1.03326 1.00857 1.20568 0.96276 0.82885 0.93506 0.91251 1.21260 0.98267 0.93033 0.85493 1.42498 1.78538 1.15739 1.01378 1.19593 1.34487 0.98193 0.84791 0.90548 1.25480 1.02912 0.96741 1.01185 1.69865 1.52907 1.10197 1.28694 0.85218 0.77780 0.76954 0.80256 1.22114 1.22416 1.19063 1.22408 1.07364 0.90361 0.98041 1.23224 0.94426 0.99523 1.03475 1.23030 0.96111 0.98224 1.03363 0.93406 0.90451 0.89203 0.78827 0.92174 0.90263 0.93581 0.93032 0.90479 0.92249 0.91005 0.90649 0.94348 0.95813 0.94054 0.79631 0.94365 0.86785 0.88772 0.86667 0.86789 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 8.34 127.77 1.07 3.26 16 2 N -0.59 -19.23 2.24 -826.49 -1.85 -21.09 16 3 C 0.60 22.27 5.44 86.66 0.47 22.74 16 4 O -0.57 -24.98 12.19 -4.04 -0.05 -25.03 16 5 C -0.30 -9.86 4.82 -20.15 -0.10 -9.96 16 6 C 0.12 3.40 10.31 84.28 0.87 4.27 16 7 N -0.45 -10.84 7.29 -56.32 -0.41 -11.25 16 8 H 0.46 7.44 8.96 -213.42 -1.91 5.53 16 9 N -0.31 -8.87 11.94 -46.67 -0.56 -9.42 16 10 C 0.13 3.97 5.65 43.52 0.25 4.21 16 11 C 0.01 0.35 0.77 -52.93 -0.04 0.31 16 12 C -0.13 -3.33 8.21 71.98 0.59 -2.73 16 13 C -0.13 -2.79 7.98 71.98 0.57 -2.21 16 14 C -0.15 -4.62 8.37 71.98 0.60 -4.02 16 15 C 0.17 5.82 2.58 44.99 0.12 5.94 16 16 H 0.07 2.85 6.91 -2.38 -0.02 2.83 16 17 C 0.15 5.68 4.19 86.38 0.36 6.04 16 18 N -0.74 -37.31 5.43 -343.46 -1.87 -39.18 16 19 C -0.24 -13.08 9.99 84.04 0.84 -12.24 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 22 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 23 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C -0.16 -4.04 4.99 -10.79 -0.05 -4.09 16 28 C -0.17 -3.52 9.45 30.62 0.29 -3.23 16 29 C -0.17 -3.73 9.94 30.62 0.30 -3.42 16 30 H 0.05 1.33 7.25 -2.39 -0.02 1.31 16 31 H 0.08 1.72 6.86 -2.38 -0.02 1.70 16 32 H 0.09 1.94 7.16 -2.39 -0.02 1.92 16 33 H 0.19 5.21 7.08 -2.91 -0.02 5.19 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.38 5.28 -2.39 -0.01 1.37 16 37 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 2.69 4.77 -2.39 -0.01 2.68 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.02 0.95 7.44 -2.39 -0.02 0.93 16 44 H 0.04 1.50 6.30 -2.39 -0.02 1.48 16 45 H 0.37 20.84 7.06 -92.70 -0.65 20.18 16 46 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 47 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.09 2.22 5.80 -2.39 -0.01 2.21 16 49 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 50 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 Total: -1.00 -72.55 395.61 2.57 -69.99 By element: Atomic # 1 Polarization: 47.59 SS G_CDS: -1.61 Total: 45.98 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.61 Total: 1.29 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -4.41 Total: -139.98 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.55 2.57 -69.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331348266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.118 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds