Wall clock time and date at job start Tue Mar 31 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 C 1.50709 * 109.46886 * 119.99626 * 2 1 3 5 5 C 1.35355 * 126.38552 * 325.32526 * 4 2 1 6 6 C 1.41504 * 105.50314 * 180.08531 * 5 4 2 7 7 C 1.47710 * 126.52100 * 179.90250 * 6 5 4 8 8 O 1.21575 * 119.99733 * 359.70818 * 7 6 5 9 9 N 1.34778 * 120.00070 * 179.71108 * 7 6 5 10 10 C 1.46498 * 119.99570 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.82277 * 323.11563 * 10 9 7 12 12 C 1.54894 * 110.75336 * 86.45972 * 10 9 7 13 13 C 1.54266 * 104.31305 * 156.31761 * 12 10 9 14 14 C 1.53869 * 106.60031 * 336.32486 * 13 12 10 15 15 H 1.08999 * 110.04012 * 119.28327 * 14 13 12 16 16 C 1.53009 * 110.02997 * 240.66603 * 14 13 12 17 17 N 1.46493 * 109.47072 * 293.54344 * 16 14 13 18 18 C 1.36937 * 120.00028 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99956 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31609 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99499 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47227 * 60.00027 * 22 20 18 24 24 H 1.48505 * 109.46736 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47176 * 299.99548 * 22 20 18 26 26 C 1.54266 * 106.59800 * 359.97438 * 14 13 12 27 27 N 1.31813 * 106.96355 * 359.63681 * 6 5 4 28 28 N 1.28472 * 110.06954 * 0.22861 * 27 6 5 29 29 C 1.46494 * 124.88202 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.47426 * 300.00104 * 1 2 3 31 31 H 1.09004 * 109.46825 * 60.00021 * 1 2 3 32 32 H 1.09006 * 109.47221 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47426 * 239.99896 * 2 1 3 34 34 H 1.09002 * 109.46943 * 59.99600 * 3 2 1 35 35 H 1.08996 * 109.47423 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47142 * 299.99785 * 3 2 1 37 37 H 1.07995 * 127.25079 * 359.96627 * 5 4 2 38 38 H 0.97002 * 119.99937 * 359.97438 * 9 7 6 39 39 H 1.09002 * 110.48891 * 37.57187 * 12 10 9 40 40 H 1.08998 * 110.48494 * 275.06274 * 12 10 9 41 41 H 1.09001 * 110.03084 * 95.60669 * 13 12 10 42 42 H 1.08996 * 110.03108 * 216.98559 * 13 12 10 43 43 H 1.09002 * 109.46887 * 53.54340 * 16 14 13 44 44 H 1.08997 * 109.47186 * 173.54237 * 16 14 13 45 45 H 0.97001 * 120.00345 * 0.02562 * 17 16 14 46 46 H 0.97005 * 119.99830 * 180.02562 * 21 20 18 47 47 H 1.09005 * 110.48526 * 142.29451 * 26 14 13 48 48 H 1.09007 * 110.48724 * 264.79935 * 26 14 13 49 49 H 1.09000 * 109.47683 * 89.97257 * 29 28 27 50 50 H 1.09000 * 109.47280 * 209.97248 * 29 28 27 51 51 H 1.09004 * 109.47122 * 329.97177 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.4550 -0.7013 2.4548 6 6 2.2878 -1.5022 3.2717 7 6 2.0871 -1.8035 4.7037 8 8 1.1303 -1.3406 5.2939 9 7 2.9646 -2.5915 5.3561 10 6 2.7657 -2.8898 6.7765 11 1 2.3673 -2.0222 7.3025 12 6 1.8352 -4.1151 6.9550 13 6 2.1964 -4.6685 8.3489 14 6 3.6288 -4.1954 8.6520 15 1 3.6351 -3.5729 9.5468 16 6 4.5490 -5.4022 8.8471 17 7 4.1548 -6.1261 10.0581 18 6 4.8395 -7.2497 10.4376 19 1 5.6699 -7.6023 9.8440 20 6 4.4655 -7.9360 11.5849 21 7 3.4532 -7.5066 12.3080 22 14 5.4001 -9.4682 12.1029 23 1 6.8247 -9.1227 12.3399 24 1 4.8074 -10.0109 13.3517 25 1 5.3104 -10.4896 11.0286 26 6 4.0884 -3.3716 7.4314 27 7 3.2737 -1.9331 2.5102 28 7 3.1388 -1.4796 1.3158 29 6 4.0537 -1.7575 0.2059 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.5504 -0.1889 2.7472 38 1 3.7278 -2.9611 4.8850 39 1 2.0343 -4.8607 6.1852 40 1 0.7899 -3.8077 6.9257 41 1 1.5074 -4.2755 9.0966 42 1 2.1560 -5.7576 8.3402 43 1 4.4675 -6.0643 7.9852 44 1 5.5794 -5.0610 8.9470 45 1 3.4082 -5.8101 10.5908 46 1 3.1921 -7.9860 13.1099 47 1 4.6880 -2.5190 7.7504 48 1 4.6535 -3.9968 6.7401 49 1 3.7249 -2.6536 -0.3204 50 1 4.0569 -0.9124 -0.4826 51 1 5.0600 -1.9131 0.5947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332258723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:46 Heat of formation + Delta-G solvation = 30.093714 kcal Electronic energy + Delta-G solvation = -28166.740090 eV Core-core repulsion = 24295.143074 eV Total energy + Delta-G solvation = -3871.597016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.03991 -39.70006 -37.87722 -36.26819 -34.74809 -33.86932 -33.24955 -31.01709 -29.99576 -28.66821 -28.37074 -27.69960 -27.10307 -24.46648 -23.48539 -22.89756 -22.14571 -20.75623 -20.51514 -19.81622 -18.94547 -17.71731 -17.02466 -16.70894 -16.66506 -16.05740 -15.46249 -15.09141 -14.71094 -14.61890 -14.44150 -14.22702 -14.02618 -13.59137 -13.34806 -13.34050 -13.16192 -13.06478 -12.94302 -12.70537 -12.66964 -12.16368 -11.93134 -11.76911 -11.74961 -11.42766 -11.33684 -11.05956 -11.03616 -10.80831 -10.69627 -10.45523 -10.28609 -10.16558 -10.04049 -9.80688 -9.60394 -9.42525 -9.23812 -8.94235 -8.80326 -6.84870 -5.70497 -2.98570 1.36199 1.82747 2.09278 3.13090 3.34991 3.47681 3.51693 3.53037 3.91788 4.02192 4.29935 4.52113 4.54907 4.60279 4.63734 4.76618 4.78604 4.87891 4.94113 5.04193 5.12574 5.14901 5.21803 5.26960 5.33409 5.47187 5.53434 5.59621 5.63369 5.69000 5.71730 5.73402 5.78457 5.81998 5.94473 6.02546 6.12334 6.22465 6.26687 6.37353 6.40947 6.42917 6.54875 6.67421 6.76928 6.90990 7.02963 7.41224 7.70006 7.74720 8.19661 8.48763 9.59626 10.19359 10.54201 11.52379 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028703 B = 0.001763 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.265100 B =15876.009485 C =16381.586440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.016 3.984 5 C -0.173 4.173 6 C -0.013 4.013 7 C 0.604 3.396 8 O -0.533 6.533 9 N -0.708 5.708 10 C 0.139 3.861 11 H 0.095 0.905 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.095 4.095 15 H 0.074 0.926 16 C 0.161 3.839 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.120 4.120 27 N -0.262 5.262 28 N -0.281 5.281 29 C 0.084 3.916 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.160 0.840 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.019 0.981 44 H 0.016 0.984 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 18.490 -30.742 35.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.108 4.108 5 C -0.201 4.201 6 C -0.173 4.173 7 C 0.388 3.612 8 O -0.408 6.408 9 N -0.358 5.358 10 C 0.035 3.965 11 H 0.113 0.887 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.114 4.114 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.158 4.158 27 N -0.097 5.097 28 N -0.069 5.069 29 C -0.056 4.056 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.178 0.822 38 H 0.240 0.760 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.036 0.964 44 H 0.034 0.966 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.112 0.888 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.938 17.990 -30.351 35.335 hybrid contribution 0.067 -0.611 0.202 0.647 sum -1.871 17.379 -30.149 34.850 Atomic orbital electron populations 1.21831 0.92903 1.02689 1.02726 1.19676 0.96914 0.95408 0.92390 1.21863 1.00993 0.94583 1.02832 1.21366 0.90898 1.00332 0.98216 1.21454 1.02845 1.04687 0.91087 1.21935 0.95961 1.04141 0.95274 1.16887 0.82451 0.78362 0.83519 1.90796 1.30113 1.52754 1.67147 1.45889 1.28233 1.50187 1.11495 1.22168 0.96579 0.98251 0.79547 0.88668 1.22736 0.99440 0.96645 0.98214 1.22122 0.95868 1.02074 0.95202 1.21862 0.95503 0.97103 0.96969 0.90716 1.20734 0.94880 0.90710 0.90380 1.42361 1.38837 1.30139 1.26268 1.19196 1.10266 1.01706 1.05855 0.91342 1.24733 0.98715 0.99573 0.98052 1.69650 1.29295 1.41514 1.17760 0.86274 0.79118 0.83167 0.77654 1.21340 1.21714 1.21358 1.22661 0.95788 0.99678 0.97690 1.73529 1.23892 1.20752 0.91546 1.45289 1.19378 1.34492 1.07765 1.22169 0.93781 1.03348 0.86346 0.91635 0.91714 0.92105 0.90187 0.91728 0.92751 0.91621 0.82196 0.75978 0.91629 0.91551 0.91890 0.90316 0.96364 0.96582 0.78192 0.93525 0.91223 0.90886 0.89643 0.88770 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.78 37.16 0.33 -0.34 16 2 C -0.02 -0.11 2.89 -91.77 -0.27 -0.38 16 3 C -0.14 -0.60 9.18 37.16 0.34 -0.26 16 4 C 0.02 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -1.85 9.95 -39.37 -0.39 -2.24 16 6 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 7 C 0.60 8.63 7.82 -12.39 -0.10 8.53 16 8 O -0.53 -9.16 16.66 5.30 0.09 -9.08 16 9 N -0.71 -8.99 5.21 -52.67 -0.27 -9.27 16 10 C 0.14 1.88 3.20 -65.73 -0.21 1.67 16 11 H 0.10 1.39 7.71 -51.93 -0.40 0.99 16 12 C -0.13 -1.92 6.50 -25.07 -0.16 -2.08 16 13 C -0.11 -1.89 6.13 -25.62 -0.16 -2.05 16 14 C -0.10 -1.58 2.98 -89.50 -0.27 -1.85 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.16 3.30 5.29 -4.04 -0.02 3.27 16 17 N -0.73 -18.94 5.34 -59.91 -0.32 -19.26 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 22 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C -0.12 -1.60 5.98 -24.87 -0.15 -1.75 16 27 N -0.26 -2.91 11.67 33.42 0.39 -2.52 16 28 N -0.28 -2.34 3.70 -63.85 -0.24 -2.58 16 29 C 0.08 0.31 10.89 59.84 0.65 0.96 16 30 H 0.06 0.33 7.35 -51.93 -0.38 -0.05 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.26 7.42 -51.93 -0.39 -0.12 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.16 1.60 7.46 -52.49 -0.39 1.21 16 38 H 0.41 4.52 8.27 -40.82 -0.34 4.18 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.44 7.50 -40.82 -0.31 10.13 16 46 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.92 7.74 -51.93 -0.40 0.52 16 49 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 50 H 0.09 0.13 7.45 -51.93 -0.39 -0.26 16 51 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 413.17 15.07 6.23 6.23 Total: -1.00 -35.03 413.17 -8.99 -44.03 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.85 Total: 7.81 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.72 Total: -5.13 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.28 Total: -61.65 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.03 -8.99 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332258723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.120 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds