Wall clock time and date at job start Tue Mar 31 2020 19:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 C 1.50709 * 109.46886 * 119.99626 * 2 1 3 5 5 C 1.35355 * 126.38552 * 325.32526 * 4 2 1 6 6 C 1.41504 * 105.50314 * 180.08531 * 5 4 2 7 7 C 1.47710 * 126.52100 * 179.90250 * 6 5 4 8 8 O 1.21575 * 119.99733 * 359.70818 * 7 6 5 9 9 N 1.34778 * 120.00070 * 179.71108 * 7 6 5 10 10 C 1.46498 * 119.99570 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.82277 * 323.11563 * 10 9 7 12 12 C 1.54894 * 110.75336 * 86.45972 * 10 9 7 13 13 C 1.54266 * 104.31305 * 156.31761 * 12 10 9 14 14 C 1.53869 * 106.60031 * 336.32486 * 13 12 10 15 15 H 1.08999 * 110.04012 * 119.28327 * 14 13 12 16 16 C 1.53009 * 110.02997 * 240.66603 * 14 13 12 17 17 N 1.46493 * 109.47072 * 293.54344 * 16 14 13 18 18 C 1.36937 * 120.00028 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99956 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31609 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99499 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47227 * 60.00027 * 22 20 18 24 24 H 1.48505 * 109.46736 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47176 * 299.99548 * 22 20 18 26 26 C 1.54266 * 106.59800 * 359.97438 * 14 13 12 27 27 N 1.31813 * 106.96355 * 359.63681 * 6 5 4 28 28 N 1.28472 * 110.06954 * 0.22861 * 27 6 5 29 29 C 1.46494 * 124.88202 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.47426 * 300.00104 * 1 2 3 31 31 H 1.09004 * 109.46825 * 60.00021 * 1 2 3 32 32 H 1.09006 * 109.47221 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47426 * 239.99896 * 2 1 3 34 34 H 1.09002 * 109.46943 * 59.99600 * 3 2 1 35 35 H 1.08996 * 109.47423 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47142 * 299.99785 * 3 2 1 37 37 H 1.07995 * 127.25079 * 359.96627 * 5 4 2 38 38 H 0.97002 * 119.99937 * 359.97438 * 9 7 6 39 39 H 1.09002 * 110.48891 * 37.57187 * 12 10 9 40 40 H 1.08998 * 110.48494 * 275.06274 * 12 10 9 41 41 H 1.09001 * 110.03084 * 95.60669 * 13 12 10 42 42 H 1.08996 * 110.03108 * 216.98559 * 13 12 10 43 43 H 1.09002 * 109.46887 * 53.54340 * 16 14 13 44 44 H 1.08997 * 109.47186 * 173.54237 * 16 14 13 45 45 H 0.97001 * 120.00345 * 0.02562 * 17 16 14 46 46 H 0.97005 * 119.99830 * 180.02562 * 21 20 18 47 47 H 1.09005 * 110.48526 * 142.29451 * 26 14 13 48 48 H 1.09007 * 110.48724 * 264.79935 * 26 14 13 49 49 H 1.09000 * 109.47683 * 89.97257 * 29 28 27 50 50 H 1.09000 * 109.47280 * 209.97248 * 29 28 27 51 51 H 1.09004 * 109.47122 * 329.97177 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.4550 -0.7013 2.4548 6 6 2.2878 -1.5022 3.2717 7 6 2.0871 -1.8035 4.7037 8 8 1.1303 -1.3406 5.2939 9 7 2.9646 -2.5915 5.3561 10 6 2.7657 -2.8898 6.7765 11 1 2.3673 -2.0222 7.3025 12 6 1.8352 -4.1151 6.9550 13 6 2.1964 -4.6685 8.3489 14 6 3.6288 -4.1954 8.6520 15 1 3.6351 -3.5729 9.5468 16 6 4.5490 -5.4022 8.8471 17 7 4.1548 -6.1261 10.0581 18 6 4.8395 -7.2497 10.4376 19 1 5.6699 -7.6023 9.8440 20 6 4.4655 -7.9360 11.5849 21 7 3.4532 -7.5066 12.3080 22 14 5.4001 -9.4682 12.1029 23 1 6.8247 -9.1227 12.3399 24 1 4.8074 -10.0109 13.3517 25 1 5.3104 -10.4896 11.0286 26 6 4.0884 -3.3716 7.4314 27 7 3.2737 -1.9331 2.5102 28 7 3.1388 -1.4796 1.3158 29 6 4.0537 -1.7575 0.2059 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.5504 -0.1889 2.7472 38 1 3.7278 -2.9611 4.8850 39 1 2.0343 -4.8607 6.1852 40 1 0.7899 -3.8077 6.9257 41 1 1.5074 -4.2755 9.0966 42 1 2.1560 -5.7576 8.3402 43 1 4.4675 -6.0643 7.9852 44 1 5.5794 -5.0610 8.9470 45 1 3.4082 -5.8101 10.5908 46 1 3.1921 -7.9860 13.1099 47 1 4.6880 -2.5190 7.7504 48 1 4.6535 -3.9968 6.7401 49 1 3.7249 -2.6536 -0.3204 50 1 4.0569 -0.9124 -0.4826 51 1 5.0600 -1.9131 0.5947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332258723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:45 Heat of formation + Delta-G solvation = 7.081679 kcal Electronic energy + Delta-G solvation = -28167.737967 eV Core-core repulsion = 24295.143074 eV Total energy + Delta-G solvation = -3872.594893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.75228 -40.84927 -39.18396 -36.71461 -36.44419 -34.89235 -34.36930 -32.89736 -30.68499 -30.13928 -29.40888 -28.04224 -28.02400 -26.19026 -24.37677 -23.94622 -23.53619 -21.69036 -21.57329 -20.73432 -20.22620 -19.07326 -18.39821 -17.62378 -17.31960 -17.20230 -16.75907 -16.52388 -15.75554 -15.65936 -15.40707 -15.19238 -15.06404 -14.76980 -14.68100 -14.46011 -14.23382 -13.92532 -13.56021 -13.42110 -13.41267 -13.30634 -13.00369 -12.92483 -12.76112 -12.60131 -12.49582 -12.21384 -12.11487 -12.10268 -11.86228 -11.79350 -11.76665 -11.71928 -11.53534 -11.29320 -11.25720 -10.89726 -10.26991 -9.95956 -9.93988 -8.97273 -7.93349 -5.21934 0.49180 1.09311 1.47132 1.50677 1.53582 1.56824 2.12366 2.33465 2.57430 3.27607 3.39668 3.50360 3.54435 3.66321 3.81995 3.88886 4.08549 4.19119 4.20752 4.35362 4.35877 4.39902 4.44564 4.47278 4.50157 4.57601 4.61633 4.65546 4.67219 4.73354 4.78799 4.82923 4.90463 4.98547 4.99658 5.00678 5.12279 5.15430 5.16837 5.24331 5.30856 5.38009 5.39767 5.43024 5.47300 5.52022 5.57190 5.83974 6.28745 6.43112 6.88588 7.14736 7.34915 8.12599 8.35779 9.30066 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028703 B = 0.001763 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.265100 B =15876.009485 C =16381.586440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.021 4.021 3 C -0.143 4.143 4 C 0.031 3.969 5 C -0.198 4.198 6 C -0.043 4.043 7 C 0.602 3.398 8 O -0.571 6.571 9 N -0.697 5.697 10 C 0.147 3.853 11 H 0.087 0.913 12 C -0.123 4.123 13 C -0.110 4.110 14 C -0.088 4.088 15 H 0.069 0.931 16 C 0.160 3.840 17 N -0.745 5.745 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.975 3.025 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.278 1.278 26 C -0.106 4.106 27 N -0.271 5.271 28 N -0.274 5.274 29 C 0.070 3.930 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.415 0.585 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.124 0.876 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 18.956 -33.878 38.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.200 4.200 4 C -0.094 4.094 5 C -0.226 4.226 6 C -0.201 4.201 7 C 0.388 3.612 8 O -0.449 6.449 9 N -0.348 5.348 10 C 0.042 3.958 11 H 0.105 0.895 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.107 4.107 15 H 0.087 0.913 16 C 0.034 3.966 17 N -0.387 5.387 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.144 4.144 27 N -0.108 5.108 28 N -0.063 5.063 29 C -0.068 4.068 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.173 0.827 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.120 0.880 50 H 0.142 0.858 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.268 18.455 -33.542 38.285 hybrid contribution -0.414 -0.721 1.033 1.326 sum -0.682 17.734 -32.509 37.038 Atomic orbital electron populations 1.21845 0.92909 1.02292 1.03189 1.19842 0.96862 0.95732 0.91604 1.21854 1.01203 0.93914 1.03076 1.21807 0.90062 0.99136 0.98439 1.21579 1.03278 1.05476 0.92234 1.21750 0.97571 1.06111 0.94710 1.17180 0.81895 0.77812 0.84339 1.90764 1.31656 1.54291 1.68208 1.45754 1.28267 1.49742 1.10997 1.21976 0.96350 0.97336 0.80153 0.89527 1.22636 0.99418 0.97112 0.96987 1.22017 0.96051 1.00382 0.96380 1.21753 0.94681 0.95879 0.98403 0.91262 1.20891 0.95821 0.91616 0.88286 1.42578 1.38383 1.30090 1.27695 1.19632 1.10207 1.02306 1.05767 0.90663 1.25590 0.99966 1.02934 0.98449 1.69818 1.31086 1.42966 1.18167 0.85192 0.78001 0.79453 0.76984 1.20302 1.22164 1.20435 1.22553 0.95735 0.99869 0.96234 1.73461 1.23556 1.21164 0.92652 1.45776 1.19646 1.33144 1.07710 1.22641 0.93245 1.05478 0.85448 0.92740 0.89738 0.92940 0.87559 0.93242 0.92384 0.89675 0.82697 0.74854 0.91246 0.92144 0.92301 0.92844 0.96157 0.96044 0.79420 0.94056 0.89449 0.89531 0.88011 0.85813 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.78 71.98 0.63 -0.46 16 2 C -0.02 -0.14 2.89 -11.54 -0.03 -0.18 16 3 C -0.14 -0.81 9.18 71.98 0.66 -0.15 16 4 C 0.03 0.45 5.84 41.40 0.24 0.69 16 5 C -0.20 -4.27 9.95 22.41 0.22 -4.05 16 6 C -0.04 -1.09 7.13 42.46 0.30 -0.79 16 7 C 0.60 17.53 7.82 86.75 0.68 18.21 16 8 O -0.57 -20.39 16.66 -3.95 -0.07 -20.46 16 9 N -0.70 -17.41 5.21 -438.81 -2.29 -19.70 16 10 C 0.15 3.91 3.20 46.42 0.15 4.06 16 11 H 0.09 2.52 7.71 -2.39 -0.02 2.50 16 12 C -0.12 -3.60 6.50 31.67 0.21 -3.39 16 13 C -0.11 -3.71 6.13 31.32 0.19 -3.51 16 14 C -0.09 -2.89 2.98 -10.07 -0.03 -2.92 16 15 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 16 C 0.16 6.51 5.29 86.38 0.46 6.96 16 17 N -0.74 -38.97 5.34 -343.45 -1.83 -40.80 16 18 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.54 5.50 84.87 0.47 -4.08 16 21 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 22 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 C -0.11 -2.66 5.98 31.80 0.19 -2.47 16 27 N -0.27 -5.75 11.67 -48.17 -0.56 -6.32 16 28 N -0.27 -4.02 3.70 -355.93 -1.32 -5.33 16 29 C 0.07 0.29 10.89 127.77 1.39 1.68 16 30 H 0.05 0.53 7.35 -2.39 -0.02 0.52 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.11 0.24 7.42 -2.39 -0.02 0.23 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.16 3.33 7.46 -2.91 -0.02 3.31 16 38 H 0.41 8.78 8.27 -92.71 -0.77 8.01 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.37 20.84 7.50 -92.71 -0.70 20.15 16 46 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 47 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.09 1.99 7.74 -2.38 -0.02 1.97 16 49 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 50 H 0.12 -0.20 7.45 -2.39 -0.02 -0.22 16 51 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 Total: -1.00 -77.07 413.17 2.28 -74.79 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.54 Total: 32.98 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.57 Total: -3.73 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.72 Total: -132.64 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.07 Total: -20.46 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.07 2.28 -74.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332258723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.875 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds