Wall clock time and date at job start Tue Mar 31 2020 20:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47206 * 2 1 4 4 C 1.52994 * 109.47585 * 239.99520 * 2 1 3 5 5 C 1.50706 * 109.46752 * 119.99557 * 2 1 3 6 6 C 1.40075 * 125.87087 * 75.00348 * 5 2 1 7 7 C 1.34644 * 107.75008 * 180.09021 * 6 5 2 8 8 N 1.35312 * 108.06329 * 359.73108 * 7 6 5 9 9 N 1.31012 * 125.87482 * 255.02552 * 5 2 1 10 10 C 1.46552 * 124.92185 * 180.56605 * 8 7 6 11 11 C 1.53259 * 109.23789 * 341.15203 * 10 8 7 12 12 N 1.47080 * 109.22467 * 45.99709 * 11 10 8 13 13 C 1.34778 * 121.00729 * 116.47554 * 12 11 10 14 14 O 1.21284 * 119.99713 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99909 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.47157 * 319.99775 * 15 13 12 17 17 N 1.46903 * 109.46931 * 199.99521 * 15 13 12 18 18 C 1.53003 * 109.46963 * 79.99883 * 15 13 12 19 19 C 1.53000 * 109.47352 * 184.99763 * 18 15 13 20 20 C 1.50688 * 109.47506 * 180.02562 * 19 18 15 21 21 H 1.08006 * 119.99991 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00423 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99991 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00269 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47088 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46835 * 120.00061 * 24 22 20 27 27 H 1.48506 * 109.46857 * 239.99528 * 24 22 20 28 28 C 1.47501 * 117.98654 * 296.44853 * 12 11 10 29 29 H 1.08995 * 109.47793 * 299.99960 * 1 2 3 30 30 H 1.08997 * 109.47170 * 60.00549 * 1 2 3 31 31 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47560 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47320 * 299.99990 * 3 2 1 34 34 H 1.09005 * 109.47202 * 59.99592 * 3 2 1 35 35 H 1.09003 * 109.47497 * 300.00556 * 4 2 1 36 36 H 1.09003 * 109.46626 * 60.00098 * 4 2 1 37 37 H 1.08994 * 109.47511 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.12540 * 359.82289 * 6 5 2 39 39 H 1.08996 * 109.50757 * 101.07926 * 10 8 7 40 40 H 1.08997 * 109.50490 * 221.22439 * 10 8 7 41 41 H 1.09004 * 109.50701 * 165.92204 * 11 10 8 42 42 H 1.09002 * 109.51235 * 286.06959 * 11 10 8 43 43 H 1.00904 * 110.99762 * 176.04526 * 17 15 13 44 44 H 1.00896 * 111.00189 * 300.00092 * 17 15 13 45 45 H 1.09001 * 109.47282 * 304.99848 * 18 15 13 46 46 H 1.09007 * 109.47028 * 65.00104 * 18 15 13 47 47 H 1.09001 * 109.46997 * 300.00260 * 19 18 15 48 48 H 1.09003 * 109.46884 * 59.99437 * 19 18 15 49 49 H 0.96997 * 120.00681 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.94726 * 162.31355 * 28 12 11 51 51 H 1.08999 * 109.94623 * 283.57680 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 2.0289 -2.0957 1.4374 7 6 2.5557 -2.3304 2.6541 8 7 2.8897 -1.1398 3.2034 9 7 2.5467 -0.1384 2.2910 10 6 3.5054 -0.9675 4.5222 11 6 3.2827 -2.2359 5.3531 12 7 3.5895 -3.4148 4.5289 13 6 4.6014 -4.2441 4.8528 14 8 5.2752 -4.0230 5.8367 15 6 4.8954 -5.4459 3.9924 16 1 3.9584 -5.9015 3.6722 17 7 5.6757 -6.4219 4.7648 18 6 5.6965 -5.0099 2.7640 19 6 5.8880 -6.2058 1.8291 20 6 6.6776 -5.7766 0.6195 21 1 7.0093 -4.7530 0.5266 22 6 6.9756 -6.6903 -0.3691 23 7 6.5712 -7.9367 -0.2562 24 14 7.9538 -6.1581 -1.8688 25 1 8.2863 -4.7152 -1.7564 26 1 9.2070 -6.9506 -1.9492 27 1 7.1450 -6.3853 -3.0935 28 6 2.7559 -3.6624 3.3375 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 1.6646 -2.8418 0.7467 39 1 4.5747 -0.7924 4.4045 40 1 3.0498 -0.1162 5.0280 41 1 3.9378 -2.2200 6.2241 42 1 2.2434 -2.2798 5.6789 43 1 5.8308 -7.2642 4.2314 44 1 6.5497 -6.0232 5.0733 45 1 5.1570 -4.2214 2.2394 46 1 6.6706 -4.6358 3.0794 47 1 6.4276 -6.9944 2.3537 48 1 4.9140 -6.5800 1.5137 49 1 6.7805 -8.5795 -0.9518 50 1 3.2645 -4.3527 2.6647 51 1 1.7925 -4.0752 3.6370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341093805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:06 Heat of formation + Delta-G solvation = 27.218964 kcal Electronic energy + Delta-G solvation = -29992.752248 eV Core-core repulsion = 26121.030573 eV Total energy + Delta-G solvation = -3871.721675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71919 -39.91872 -37.39644 -35.90996 -35.60672 -33.20901 -32.82256 -30.94011 -29.96941 -29.02782 -27.48941 -27.34758 -26.62411 -25.89619 -24.47496 -23.10063 -22.11610 -20.60749 -19.97427 -19.10206 -18.05065 -17.51416 -17.06279 -16.28442 -16.12014 -15.72417 -15.04210 -14.99432 -14.71528 -14.47258 -14.30532 -14.12483 -14.03380 -13.75693 -13.62394 -13.26027 -13.08660 -12.77295 -12.65948 -12.44021 -12.31094 -12.16077 -12.11579 -11.78505 -11.73811 -11.72207 -11.25875 -11.14783 -11.09902 -11.02692 -10.98318 -10.69976 -10.44171 -10.05911 -10.01520 -9.38234 -9.26063 -9.12096 -8.99511 -8.47638 -8.47104 -8.29209 -6.11728 -4.14681 1.82351 2.22528 2.65590 2.77245 2.85023 3.24528 3.32869 3.37163 4.14491 4.25866 4.36484 4.45390 4.51473 4.75309 4.76999 4.90121 4.94269 5.07274 5.10852 5.18068 5.22945 5.25011 5.35732 5.42031 5.45621 5.47776 5.51565 5.62994 5.63989 5.67305 5.70136 5.76961 5.80026 5.93697 5.97805 6.06946 6.15628 6.19935 6.23597 6.31920 6.43242 6.67652 6.78766 6.92813 7.12355 7.43766 7.47129 7.55839 7.74541 7.81183 7.85297 8.17135 8.27431 8.91069 9.50730 10.99128 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007979 B = 0.004233 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.484973 B = 6612.802281 C = 9413.392362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.014 3.986 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.087 3.913 6 C -0.250 4.250 7 C 0.073 3.927 8 N -0.368 5.368 9 N -0.288 5.288 10 C 0.121 3.879 11 C 0.100 3.900 12 N -0.625 5.625 13 C 0.535 3.465 14 O -0.530 6.530 15 C 0.074 3.926 16 H 0.099 0.901 17 N -0.830 5.830 18 C -0.140 4.140 19 C 0.026 3.974 20 C -0.523 4.523 21 H 0.054 0.946 22 C 0.061 3.939 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.168 3.832 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.151 0.849 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.356 0.644 44 H 0.346 0.654 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.261 0.739 50 H 0.123 0.877 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.400 13.564 4.880 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.079 4.079 6 C -0.280 4.280 7 C -0.055 4.055 8 N -0.151 5.151 9 N -0.109 5.109 10 C -0.001 4.001 11 C -0.024 4.024 12 N -0.361 5.361 13 C 0.324 3.676 14 O -0.405 6.405 15 C -0.041 4.041 16 H 0.117 0.883 17 N -0.362 5.362 18 C -0.179 4.179 19 C -0.011 4.011 20 C -0.561 4.561 21 H 0.072 0.928 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.718 3.282 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.209 1.209 28 C 0.044 3.956 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.141 0.859 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.208 14.624 6.590 20.778 hybrid contribution 1.075 -0.381 -2.051 2.346 sum -12.133 14.244 4.539 19.253 Atomic orbital electron populations 1.21838 0.93311 1.02339 1.01826 1.18979 0.95375 0.94736 0.89729 1.21779 1.01430 0.94425 1.01656 1.21875 1.01728 1.00594 0.95534 1.22202 0.98371 0.92634 0.94732 1.20834 1.13429 0.96120 0.97569 1.21096 1.00495 0.88878 0.95004 1.48429 1.48442 1.03451 1.14773 1.77215 1.20924 1.12394 1.00371 1.22125 0.98961 0.99628 0.79428 1.21873 1.02933 0.82988 0.94653 1.48212 1.33474 1.26873 1.27506 1.20991 0.77949 0.83628 0.84983 1.90637 1.48267 1.73786 1.27819 1.21525 0.99745 0.90805 0.92020 0.88321 1.58759 1.25607 1.07930 1.43913 1.22448 0.98792 1.01849 0.94843 1.19095 0.97302 0.91521 0.93189 1.21178 1.34641 0.96012 1.04250 0.92760 1.24982 0.95890 0.94897 0.98344 1.69950 1.46160 1.02754 1.34259 0.86558 0.79930 0.78806 0.82891 1.19781 1.20929 1.20851 1.20734 0.96574 0.92263 0.86050 0.92683 0.91981 0.92089 0.92475 0.92486 0.92230 0.91796 0.92019 0.92188 0.83177 0.89692 0.88165 0.86453 0.90134 0.82823 0.84083 0.92446 0.92616 0.96347 0.96244 0.92909 0.85948 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.46 37.16 0.31 -0.87 16 2 C 0.01 0.15 0.96 -155.67 -0.15 0.00 16 3 C -0.14 -1.38 8.03 37.15 0.30 -1.08 16 4 C -0.14 -1.41 8.20 37.15 0.30 -1.10 16 5 C 0.09 1.15 5.66 -82.25 -0.47 0.68 16 6 C -0.25 -3.26 10.05 -40.17 -0.40 -3.67 16 7 C 0.07 0.96 6.71 -82.17 -0.55 0.41 16 8 N -0.37 -4.96 4.03 -56.93 -0.23 -5.19 16 9 N -0.29 -4.17 11.93 33.74 0.40 -3.77 16 10 C 0.12 1.31 7.44 -3.88 -0.03 1.28 16 11 C 0.10 1.05 6.42 -3.59 -0.02 1.02 16 12 N -0.62 -8.06 2.97 -173.42 -0.52 -8.58 16 13 C 0.54 8.49 6.96 -10.99 -0.08 8.41 16 14 O -0.53 -9.74 15.69 5.55 0.09 -9.66 16 15 C 0.07 1.20 2.35 -68.86 -0.16 1.04 16 16 H 0.10 1.48 7.05 -51.93 -0.37 1.11 16 17 N -0.83 -13.68 8.94 -5.65 -0.05 -13.73 16 18 C -0.14 -2.67 4.44 -26.73 -0.12 -2.79 16 19 C 0.03 0.61 4.74 -27.89 -0.13 0.48 16 20 C -0.52 -14.09 9.11 -34.45 -0.31 -14.41 16 21 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 24 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.17 1.97 6.16 -4.48 -0.03 1.95 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.15 1.72 7.72 -52.49 -0.41 1.31 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.12 1.25 7.02 -51.93 -0.36 0.89 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.36 5.87 7.55 -39.29 -0.30 5.57 16 44 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16 45 H 0.06 1.09 6.75 -51.93 -0.35 0.74 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 50 H 0.12 1.55 4.89 -51.93 -0.25 1.30 16 51 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -32.29 402.80 -8.73 -41.02 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.58 Total: 9.55 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.63 Total: -7.08 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.34 Total: -56.02 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.29 -8.73 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341093805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.243 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds