Wall clock time and date at job start Tue Mar 31 2020 20:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47206 * 2 1 4 4 C 1.52994 * 109.47585 * 239.99520 * 2 1 3 5 5 C 1.50706 * 109.46752 * 119.99557 * 2 1 3 6 6 C 1.40075 * 125.87087 * 75.00348 * 5 2 1 7 7 C 1.34644 * 107.75008 * 180.09021 * 6 5 2 8 8 N 1.35312 * 108.06329 * 359.73108 * 7 6 5 9 9 N 1.31012 * 125.87482 * 255.02552 * 5 2 1 10 10 C 1.46552 * 124.92185 * 180.56605 * 8 7 6 11 11 C 1.53259 * 109.23789 * 341.15203 * 10 8 7 12 12 N 1.47080 * 109.22467 * 45.99709 * 11 10 8 13 13 C 1.34778 * 121.00729 * 116.47554 * 12 11 10 14 14 O 1.21284 * 119.99713 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99909 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.47157 * 319.99775 * 15 13 12 17 17 N 1.46903 * 109.46931 * 199.99521 * 15 13 12 18 18 C 1.53003 * 109.46963 * 79.99883 * 15 13 12 19 19 C 1.53000 * 109.47352 * 184.99763 * 18 15 13 20 20 C 1.50688 * 109.47506 * 180.02562 * 19 18 15 21 21 H 1.08006 * 119.99991 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00423 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99991 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00269 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47088 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46835 * 120.00061 * 24 22 20 27 27 H 1.48506 * 109.46857 * 239.99528 * 24 22 20 28 28 C 1.47501 * 117.98654 * 296.44853 * 12 11 10 29 29 H 1.08995 * 109.47793 * 299.99960 * 1 2 3 30 30 H 1.08997 * 109.47170 * 60.00549 * 1 2 3 31 31 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47560 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47320 * 299.99990 * 3 2 1 34 34 H 1.09005 * 109.47202 * 59.99592 * 3 2 1 35 35 H 1.09003 * 109.47497 * 300.00556 * 4 2 1 36 36 H 1.09003 * 109.46626 * 60.00098 * 4 2 1 37 37 H 1.08994 * 109.47511 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.12540 * 359.82289 * 6 5 2 39 39 H 1.08996 * 109.50757 * 101.07926 * 10 8 7 40 40 H 1.08997 * 109.50490 * 221.22439 * 10 8 7 41 41 H 1.09004 * 109.50701 * 165.92204 * 11 10 8 42 42 H 1.09002 * 109.51235 * 286.06959 * 11 10 8 43 43 H 1.00904 * 110.99762 * 176.04526 * 17 15 13 44 44 H 1.00896 * 111.00189 * 300.00092 * 17 15 13 45 45 H 1.09001 * 109.47282 * 304.99848 * 18 15 13 46 46 H 1.09007 * 109.47028 * 65.00104 * 18 15 13 47 47 H 1.09001 * 109.46997 * 300.00260 * 19 18 15 48 48 H 1.09003 * 109.46884 * 59.99437 * 19 18 15 49 49 H 0.96997 * 120.00681 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.94726 * 162.31355 * 28 12 11 51 51 H 1.08999 * 109.94623 * 283.57680 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 2.0289 -2.0957 1.4374 7 6 2.5557 -2.3304 2.6541 8 7 2.8897 -1.1398 3.2034 9 7 2.5467 -0.1384 2.2910 10 6 3.5054 -0.9675 4.5222 11 6 3.2827 -2.2359 5.3531 12 7 3.5895 -3.4148 4.5289 13 6 4.6014 -4.2441 4.8528 14 8 5.2752 -4.0230 5.8367 15 6 4.8954 -5.4459 3.9924 16 1 3.9584 -5.9015 3.6722 17 7 5.6757 -6.4219 4.7648 18 6 5.6965 -5.0099 2.7640 19 6 5.8880 -6.2058 1.8291 20 6 6.6776 -5.7766 0.6195 21 1 7.0093 -4.7530 0.5266 22 6 6.9756 -6.6903 -0.3691 23 7 6.5712 -7.9367 -0.2562 24 14 7.9538 -6.1581 -1.8688 25 1 8.2863 -4.7152 -1.7564 26 1 9.2070 -6.9506 -1.9492 27 1 7.1450 -6.3853 -3.0935 28 6 2.7559 -3.6624 3.3375 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 1.6646 -2.8418 0.7467 39 1 4.5747 -0.7924 4.4045 40 1 3.0498 -0.1162 5.0280 41 1 3.9378 -2.2200 6.2241 42 1 2.2434 -2.2798 5.6789 43 1 5.8308 -7.2642 4.2314 44 1 6.5497 -6.0232 5.0733 45 1 5.1570 -4.2214 2.2394 46 1 6.6706 -4.6358 3.0794 47 1 6.4276 -6.9944 2.3537 48 1 4.9140 -6.5800 1.5137 49 1 6.7805 -8.5795 -0.9518 50 1 3.2645 -4.3527 2.6647 51 1 1.7925 -4.0752 3.6370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341093805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:05 Heat of formation + Delta-G solvation = 6.522281 kcal Electronic energy + Delta-G solvation = -29993.649723 eV Core-core repulsion = 26121.030573 eV Total energy + Delta-G solvation = -3872.619150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.70981 -41.11881 -38.34547 -37.23926 -36.78320 -34.90242 -34.05796 -31.95940 -31.71769 -30.02279 -28.48394 -28.07282 -27.98207 -26.94580 -25.96242 -24.32782 -23.11714 -22.22170 -21.10305 -20.07068 -19.23048 -18.63591 -18.39521 -17.95464 -17.10246 -16.87390 -16.46973 -16.15702 -16.04217 -15.71510 -15.51736 -15.19405 -14.99680 -14.84626 -14.70794 -14.60396 -14.22121 -14.02608 -13.96526 -13.56716 -13.43001 -13.36898 -13.04825 -12.93493 -12.92872 -12.71758 -12.57419 -12.54045 -12.52735 -12.10990 -11.95232 -11.85629 -11.82769 -11.76435 -11.36632 -11.30426 -10.83981 -10.56438 -10.16592 -10.01065 -9.69547 -9.46579 -8.22251 -6.31644 0.82418 1.26644 1.36623 1.38464 1.41314 1.50147 1.77771 1.83471 2.38792 3.11713 3.24040 3.26680 3.36462 3.65342 3.71091 3.89175 3.93872 4.02754 4.04648 4.10748 4.15826 4.22750 4.35721 4.37529 4.47490 4.58497 4.61700 4.62830 4.70925 4.78018 4.80166 4.83120 4.93066 4.95470 5.03486 5.06314 5.08175 5.16194 5.20882 5.26383 5.45224 5.46960 5.48762 5.63531 5.73517 5.79507 5.90850 6.00355 6.15114 6.21075 6.44600 6.74989 6.82607 6.95283 7.37368 8.88448 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007979 B = 0.004233 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.484973 B = 6612.802281 C = 9413.392362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.011 3.989 3 C -0.131 4.131 4 C -0.137 4.137 5 C 0.081 3.919 6 C -0.264 4.264 7 C 0.065 3.935 8 N -0.376 5.376 9 N -0.315 5.315 10 C 0.120 3.880 11 C 0.102 3.898 12 N -0.619 5.619 13 C 0.537 3.463 14 O -0.559 6.559 15 C 0.080 3.920 16 H 0.116 0.884 17 N -0.827 5.827 18 C -0.120 4.120 19 C 0.034 3.966 20 C -0.543 4.543 21 H 0.047 0.953 22 C 0.013 3.987 23 N -0.922 5.922 24 Si 0.951 3.049 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.274 1.274 28 C 0.169 3.831 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.355 0.645 44 H 0.344 0.656 45 H 0.057 0.943 46 H 0.040 0.960 47 H 0.005 0.995 48 H 0.008 0.992 49 H 0.264 0.736 50 H 0.113 0.887 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 14.337 4.407 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 C -0.188 4.188 4 C -0.195 4.195 5 C -0.085 4.085 6 C -0.293 4.293 7 C -0.063 4.063 8 N -0.160 5.160 9 N -0.136 5.136 10 C -0.002 4.002 11 C -0.021 4.021 12 N -0.353 5.353 13 C 0.326 3.674 14 O -0.436 6.436 15 C -0.035 4.035 16 H 0.133 0.867 17 N -0.359 5.359 18 C -0.160 4.160 19 C -0.003 4.003 20 C -0.581 4.581 21 H 0.065 0.935 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.777 3.223 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.200 1.200 28 C 0.046 3.954 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.180 0.820 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.023 0.977 48 H 0.027 0.973 49 H 0.073 0.927 50 H 0.131 0.869 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.630 15.420 6.116 22.118 hybrid contribution 1.495 -0.598 -1.917 2.504 sum -13.135 14.822 4.199 20.245 Atomic orbital electron populations 1.21797 0.91665 1.02744 1.02520 1.19129 0.96627 0.94561 0.88799 1.21741 1.00216 0.94514 1.02370 1.21866 1.00399 1.00999 0.96234 1.22685 0.97671 0.92976 0.95158 1.21104 1.13783 0.96488 0.97908 1.21346 1.00376 0.89259 0.95268 1.48657 1.48566 1.03390 1.15359 1.77171 1.21978 1.13311 1.01178 1.22256 0.98347 1.00746 0.78842 1.22045 1.04448 0.81595 0.93990 1.48198 1.32511 1.26849 1.27768 1.20750 0.78384 0.83731 0.84567 1.90628 1.49457 1.74480 1.29025 1.21452 0.99824 0.91336 0.90859 0.86678 1.58782 1.25555 1.07892 1.43659 1.22152 0.98591 0.99892 0.95329 1.18937 0.95865 0.92646 0.92891 1.21558 1.35068 0.95774 1.05691 0.93499 1.25735 0.96845 0.94952 1.01099 1.70039 1.47200 1.03638 1.35295 0.85606 0.78663 0.78359 0.79689 1.19623 1.20447 1.19986 1.20877 0.97654 0.91521 0.85371 0.93237 0.90013 0.91839 0.94285 0.90318 0.92915 0.91685 0.89923 0.94205 0.82039 0.91001 0.85763 0.86505 0.87453 0.82971 0.84326 0.92406 0.94146 0.97666 0.97337 0.92657 0.86944 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.46 71.98 0.61 -1.41 16 2 C 0.01 0.22 0.96 -52.93 -0.05 0.17 16 3 C -0.13 -2.55 8.03 71.98 0.58 -1.97 16 4 C -0.14 -2.60 8.20 71.98 0.59 -2.01 16 5 C 0.08 2.09 5.66 43.13 0.24 2.33 16 6 C -0.26 -6.63 10.05 21.89 0.22 -6.41 16 7 C 0.07 1.64 6.71 41.31 0.28 1.92 16 8 N -0.38 -9.80 4.03 -334.04 -1.35 -11.14 16 9 N -0.32 -8.98 11.93 -47.17 -0.56 -9.54 16 10 C 0.12 2.45 7.44 86.46 0.64 3.09 16 11 C 0.10 1.95 6.42 86.36 0.55 2.51 16 12 N -0.62 -15.00 2.97 -820.96 -2.44 -17.44 16 13 C 0.54 16.52 6.96 87.66 0.61 17.13 16 14 O -0.56 -20.18 15.69 -3.04 -0.05 -20.23 16 15 C 0.08 2.57 2.35 44.17 0.10 2.67 16 16 H 0.12 3.30 7.05 -2.39 -0.02 3.28 16 17 N -0.83 -27.07 8.94 -171.80 -1.54 -28.61 16 18 C -0.12 -4.60 4.44 30.60 0.14 -4.47 16 19 C 0.03 1.60 4.74 29.84 0.14 1.75 16 20 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 21 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 22 C 0.01 0.70 5.46 84.65 0.46 1.16 16 23 N -0.92 -52.82 13.29 21.45 0.28 -52.53 16 24 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 C 0.17 3.68 6.16 85.55 0.53 4.20 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.08 8.08 -2.38 -0.02 1.06 16 35 H 0.06 1.20 7.54 -2.39 -0.02 1.18 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.16 3.52 7.72 -2.91 -0.02 3.50 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.12 2.32 7.02 -2.38 -0.02 2.30 16 42 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.35 11.72 7.55 -89.69 -0.68 11.05 16 44 H 0.34 11.58 8.58 -89.70 -0.77 10.81 16 45 H 0.06 2.20 6.75 -2.39 -0.02 2.18 16 46 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.01 0.25 6.87 -2.39 -0.02 0.24 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.11 2.71 4.89 -2.39 -0.01 2.70 16 51 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.98 402.80 1.75 -67.23 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.51 Total: 35.63 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.88 Total: -8.63 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.60 Total: -119.26 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.98 1.75 -67.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341093805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.751 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds