Wall clock time and date at job start Tue Mar 31 2020 20:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36738 * 127.13591 * 2 1 4 4 C 1.50697 * 126.34862 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47076 * 90.00117 * 4 3 2 6 6 H 1.09003 * 109.46781 * 54.99831 * 5 4 3 7 7 O 1.42900 * 109.47259 * 295.00578 * 5 4 3 8 8 C 1.50696 * 109.47258 * 174.99758 * 5 4 3 9 9 H 1.08001 * 120.00043 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99769 * 179.97438 * 8 5 4 11 11 N 1.31520 * 120.00449 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 119.99797 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47156 * 90.00097 * 12 10 8 14 14 H 1.48507 * 109.47227 * 210.00194 * 12 10 8 15 15 H 1.48502 * 109.47441 * 329.99912 * 12 10 8 16 16 N 1.30302 * 107.30315 * 179.97438 * 3 2 1 17 17 N 1.28526 * 110.05397 * 359.97438 * 16 3 2 18 18 C 1.31214 * 109.86062 * 359.74976 * 17 16 3 19 19 N 1.38582 * 126.47636 * 180.25557 * 18 17 16 20 20 C 1.46835 * 111.00401 * 236.21872 * 19 18 17 21 21 C 1.50140 * 110.27969 * 174.30996 * 20 19 18 22 22 C 1.29825 * 123.28066 * 342.93145 * 21 20 19 23 23 C 1.50703 * 118.55064 * 180.39163 * 22 21 20 24 24 C 1.52992 * 109.47231 * 359.97438 * 23 22 21 25 25 C 1.53000 * 109.47049 * 119.99708 * 23 22 21 26 26 C 1.53002 * 109.46767 * 239.99645 * 23 22 21 27 27 C 1.50301 * 122.89305 * 0.41098 * 22 21 20 28 28 C 1.47243 * 110.99562 * 359.14818 * 19 18 17 29 29 H 1.09002 * 109.47391 * 90.02315 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.02372 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.02499 * 1 2 3 32 32 H 1.09005 * 109.47042 * 209.99817 * 4 3 2 33 33 H 1.08998 * 109.47151 * 330.00003 * 4 3 2 34 34 H 0.96708 * 113.99274 * 299.99459 * 7 5 4 35 35 H 0.96993 * 119.99925 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.33459 * 294.56080 * 20 19 18 37 37 H 1.09006 * 109.33998 * 54.22370 * 20 19 18 38 38 H 1.08000 * 118.35962 * 162.94607 * 21 20 19 39 39 H 1.09001 * 109.47395 * 60.00148 * 24 23 22 40 40 H 1.09008 * 109.47400 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47172 * 299.99961 * 24 23 22 42 42 H 1.09001 * 109.46983 * 59.99712 * 25 23 22 43 43 H 1.09000 * 109.47324 * 179.97438 * 25 23 22 44 44 H 1.08993 * 109.47179 * 299.99908 * 25 23 22 45 45 H 1.08993 * 109.47497 * 60.00425 * 26 23 22 46 46 H 1.09001 * 109.46451 * 180.02562 * 26 23 22 47 47 H 1.09003 * 109.47191 * 299.99695 * 26 23 22 48 48 H 1.08997 * 109.42959 * 103.56044 * 27 22 21 49 49 H 1.09002 * 109.42871 * 223.45841 * 27 22 21 50 50 H 1.08998 * 109.64043 * 287.49964 * 28 19 18 51 51 H 1.08998 * 109.63813 * 48.11367 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 0.0005 5 6 1.7177 3.0234 1.4432 6 1 2.6485 2.8459 1.9818 7 8 0.6548 2.3136 2.0824 8 6 1.4095 4.4986 1.4456 9 1 1.3247 5.0340 0.5115 10 6 1.2348 5.1644 2.6402 11 7 1.3376 4.5123 3.7777 12 14 0.8521 6.9928 2.6431 13 1 -0.6191 7.1906 2.6034 14 1 1.4016 7.6116 3.8762 15 1 1.4696 7.6297 1.4522 16 7 3.5162 0.6480 0.0006 17 7 3.5212 -0.6373 0.0014 18 6 2.2888 -1.0878 0.0069 19 7 1.8977 -2.4172 0.0144 20 6 1.0150 -2.7126 -1.1212 21 6 0.7130 -4.1823 -1.1771 22 6 1.4122 -5.0776 -0.5486 23 6 1.0191 -6.5259 -0.6868 24 6 -0.2033 -6.6377 -1.5999 25 6 2.1822 -7.3145 -1.2920 26 6 0.6792 -7.0958 0.6919 27 6 2.5961 -4.7333 0.3110 28 6 3.0674 -3.3114 -0.0047 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 2.6119 3.1364 -0.5134 33 1 0.9054 2.6304 -0.5129 34 1 -0.2057 2.4261 1.6556 35 1 1.2143 4.9806 4.6181 36 1 0.0840 -2.1569 -1.0087 37 1 1.5051 -2.4118 -2.0472 38 1 -0.1277 -4.5111 -1.7700 39 1 0.0385 -6.2316 -2.5821 40 1 -0.4873 -7.6854 -1.7002 41 1 -1.0318 -6.0760 -1.1684 42 1 3.0529 -7.2347 -0.6411 43 1 1.8982 -8.3621 -1.3915 44 1 2.4244 -6.9085 -2.2741 45 1 -0.1494 -6.5341 1.1230 46 1 0.3954 -8.1434 0.5919 47 1 1.5499 -7.0161 1.3428 48 1 2.3121 -4.7967 1.3614 49 1 3.4056 -5.4353 0.1113 50 1 3.5293 -3.2893 -0.9917 51 1 3.7875 -2.9888 0.7473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355643506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:18 Heat of formation + Delta-G solvation = 44.922317 kcal Electronic energy + Delta-G solvation = -29668.901932 eV Core-core repulsion = 25797.947932 eV Total energy + Delta-G solvation = -3870.954000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.55766 -39.95562 -37.36647 -36.19792 -34.51693 -32.69404 -32.18639 -31.37354 -30.86900 -28.13951 -27.64240 -27.56568 -27.27151 -25.46963 -24.66927 -23.50928 -21.65569 -20.99761 -20.23314 -19.79949 -17.80243 -17.20764 -16.93318 -16.12386 -15.93702 -15.46223 -15.13199 -14.87161 -14.65540 -14.53029 -14.46693 -14.19282 -13.76394 -13.57413 -13.18880 -13.17372 -13.07808 -12.88172 -12.70087 -12.59836 -12.22123 -12.08557 -11.98579 -11.87264 -11.63578 -11.34344 -11.27047 -11.14872 -11.03844 -10.88763 -10.82096 -10.75368 -10.49918 -10.20822 -10.11740 -9.76635 -9.59574 -9.14499 -9.01185 -8.63832 -8.40664 -7.77574 -6.05555 -4.25513 1.95056 2.20129 2.57140 3.25041 3.31583 3.33250 3.36255 3.77149 4.19196 4.34650 4.37560 4.64323 4.69701 4.77842 4.88175 4.97014 5.00147 5.08249 5.16084 5.18559 5.20739 5.21597 5.27109 5.30468 5.32952 5.39666 5.43943 5.49986 5.55783 5.57235 5.59796 5.63310 5.71776 5.75885 5.88625 5.90149 5.94858 6.01402 6.10247 6.16362 6.27925 6.38269 6.41375 6.66627 6.70991 6.76628 6.94990 7.48512 7.65354 7.77816 8.07052 8.76331 9.23112 9.26706 9.50588 10.98493 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.002300 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.100454 B =12170.236169 C =12379.813364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.475 5.475 3 C 0.218 3.782 4 C -0.062 4.062 5 C 0.237 3.763 6 H 0.064 0.936 7 O -0.561 6.561 8 C -0.574 4.574 9 H 0.059 0.941 10 C 0.080 3.920 11 N -0.856 5.856 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.272 1.272 16 N -0.298 5.298 17 N -0.325 5.325 18 C 0.335 3.665 19 N -0.441 5.441 20 C 0.083 3.917 21 C -0.171 4.171 22 C -0.094 4.094 23 C -0.036 4.036 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.082 4.082 28 C 0.071 3.929 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.338 0.662 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.125 0.875 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.052 0.948 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -22.941 -11.370 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.169 5.169 3 C -0.050 4.050 4 C -0.103 4.103 5 C 0.178 3.822 6 H 0.082 0.918 7 O -0.364 6.364 8 C -0.612 4.612 9 H 0.078 0.922 10 C -0.127 4.127 11 N -0.491 5.491 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.197 1.197 16 N -0.136 5.136 17 N -0.170 5.170 18 C -0.022 4.022 19 N -0.165 5.165 20 C -0.044 4.044 21 C -0.189 4.189 22 C -0.094 4.094 23 C -0.036 4.036 24 C -0.202 4.202 25 C -0.196 4.196 26 C -0.195 4.195 27 C -0.119 4.119 28 C -0.056 4.056 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.070 0.930 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.316 -23.237 -10.340 25.648 hybrid contribution -1.818 1.346 -0.864 2.422 sum -5.135 -21.890 -11.204 25.121 Atomic orbital electron populations 1.22129 0.75987 1.05968 1.02631 1.45916 1.08392 1.05632 1.56979 1.25233 0.86151 0.92031 1.01569 1.21192 1.01367 0.83690 1.04022 1.19430 0.88567 0.90065 0.84132 0.91779 1.86686 1.17997 1.73225 1.58448 1.21564 1.52712 0.93988 0.92918 0.92235 1.25048 0.94010 0.98078 0.95537 1.70085 1.45969 1.35764 0.97311 0.86628 0.78502 0.85245 0.77732 1.20563 1.21089 1.19700 1.73961 1.17668 1.02053 1.19931 1.74467 1.15409 1.04088 1.22993 1.22451 0.87398 0.86848 1.05477 1.59092 1.18684 0.97342 1.41398 1.21156 0.96953 0.95400 0.90919 1.22156 1.01397 0.92780 1.02612 1.20898 0.96850 0.94158 0.97540 1.19626 0.95615 0.92224 0.96114 1.21984 0.97253 1.01738 0.99258 1.21867 0.97555 0.99375 1.00831 1.21843 1.01878 1.00316 0.95501 1.20589 0.96079 0.95208 1.00012 1.22124 0.90304 0.90576 1.02562 0.91207 0.87996 0.89352 0.88515 0.91116 0.81778 0.92861 0.89309 0.92906 0.85760 0.92322 0.92485 0.92162 0.92243 0.92512 0.92579 0.92419 0.92609 0.92289 0.89747 0.89892 0.92991 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.25 59.85 0.55 1.52 16 2 N -0.47 -8.17 3.21 -121.46 -0.39 -8.56 16 3 C 0.22 4.41 7.09 -154.01 -1.09 3.31 16 4 C -0.06 -1.25 5.05 -27.88 -0.14 -1.39 16 5 C 0.24 5.83 2.81 -27.88 -0.08 5.76 16 6 H 0.06 1.85 8.14 -51.93 -0.42 1.43 16 7 O -0.56 -13.57 11.65 -35.23 -0.41 -13.98 16 8 C -0.57 -15.12 8.76 -34.44 -0.30 -15.42 16 9 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 11 N -0.86 -25.04 12.84 55.43 0.71 -24.33 16 12 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 16 N -0.30 -6.66 12.18 32.99 0.40 -6.25 16 17 N -0.32 -6.71 11.11 30.31 0.34 -6.37 16 18 C 0.33 5.90 7.18 -318.87 -2.29 3.61 16 19 N -0.44 -6.15 4.77 -175.92 -0.84 -6.99 16 20 C 0.08 0.91 5.34 -5.28 -0.03 0.88 16 21 C -0.17 -1.56 8.97 -35.97 -0.32 -1.88 16 22 C -0.09 -0.82 4.74 -100.93 -0.48 -1.30 16 23 C -0.04 -0.25 0.85 -155.66 -0.13 -0.38 16 24 C -0.15 -0.89 7.08 37.15 0.26 -0.63 16 25 C -0.14 -0.88 8.24 37.16 0.31 -0.57 16 26 C -0.14 -0.93 8.30 37.16 0.31 -0.62 16 27 C -0.08 -0.77 5.30 -28.03 -0.15 -0.92 16 28 C 0.07 0.89 5.10 -3.59 -0.02 0.87 16 29 H 0.07 0.68 7.97 -51.93 -0.41 0.27 16 30 H 0.10 1.34 5.50 -51.93 -0.29 1.05 16 31 H 0.09 1.02 7.47 -51.93 -0.39 0.63 16 32 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 33 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 34 H 0.34 6.93 7.67 45.56 0.35 7.28 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.09 0.89 5.62 -51.93 -0.29 0.60 16 37 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.12 0.93 5.26 -52.49 -0.28 0.66 16 39 H 0.06 0.36 7.42 -51.93 -0.39 -0.03 16 40 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 41 H 0.06 0.38 7.41 -51.93 -0.38 -0.01 16 42 H 0.06 0.37 6.81 -51.93 -0.35 0.01 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.40 7.58 -51.93 -0.39 0.01 16 48 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 49 H 0.08 0.65 6.63 -51.93 -0.34 0.30 16 50 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 51 H 0.10 1.35 7.68 -51.93 -0.40 0.95 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -33.35 394.26 -10.70 -44.04 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.73 Total: 5.91 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.70 Total: -5.07 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.22 Total: -52.51 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.41 Total: -13.98 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.35 -10.70 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355643506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.967 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds