Wall clock time and date at job start Tue Mar 31 2020 20:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36738 * 127.13591 * 2 1 4 4 C 1.50697 * 126.34862 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47076 * 90.00117 * 4 3 2 6 6 H 1.09003 * 109.46781 * 54.99831 * 5 4 3 7 7 O 1.42900 * 109.47259 * 295.00578 * 5 4 3 8 8 C 1.50696 * 109.47258 * 174.99758 * 5 4 3 9 9 H 1.08001 * 120.00043 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99769 * 179.97438 * 8 5 4 11 11 N 1.31520 * 120.00449 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 119.99797 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47156 * 90.00097 * 12 10 8 14 14 H 1.48507 * 109.47227 * 210.00194 * 12 10 8 15 15 H 1.48502 * 109.47441 * 329.99912 * 12 10 8 16 16 N 1.30302 * 107.30315 * 179.97438 * 3 2 1 17 17 N 1.28526 * 110.05397 * 359.97438 * 16 3 2 18 18 C 1.31214 * 109.86062 * 359.74976 * 17 16 3 19 19 N 1.38582 * 126.47636 * 180.25557 * 18 17 16 20 20 C 1.46835 * 111.00401 * 236.21872 * 19 18 17 21 21 C 1.50140 * 110.27969 * 174.30996 * 20 19 18 22 22 C 1.29825 * 123.28066 * 342.93145 * 21 20 19 23 23 C 1.50703 * 118.55064 * 180.39163 * 22 21 20 24 24 C 1.52992 * 109.47231 * 359.97438 * 23 22 21 25 25 C 1.53000 * 109.47049 * 119.99708 * 23 22 21 26 26 C 1.53002 * 109.46767 * 239.99645 * 23 22 21 27 27 C 1.50301 * 122.89305 * 0.41098 * 22 21 20 28 28 C 1.47243 * 110.99562 * 359.14818 * 19 18 17 29 29 H 1.09002 * 109.47391 * 90.02315 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.02372 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.02499 * 1 2 3 32 32 H 1.09005 * 109.47042 * 209.99817 * 4 3 2 33 33 H 1.08998 * 109.47151 * 330.00003 * 4 3 2 34 34 H 0.96708 * 113.99274 * 299.99459 * 7 5 4 35 35 H 0.96993 * 119.99925 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.33459 * 294.56080 * 20 19 18 37 37 H 1.09006 * 109.33998 * 54.22370 * 20 19 18 38 38 H 1.08000 * 118.35962 * 162.94607 * 21 20 19 39 39 H 1.09001 * 109.47395 * 60.00148 * 24 23 22 40 40 H 1.09008 * 109.47400 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47172 * 299.99961 * 24 23 22 42 42 H 1.09001 * 109.46983 * 59.99712 * 25 23 22 43 43 H 1.09000 * 109.47324 * 179.97438 * 25 23 22 44 44 H 1.08993 * 109.47179 * 299.99908 * 25 23 22 45 45 H 1.08993 * 109.47497 * 60.00425 * 26 23 22 46 46 H 1.09001 * 109.46451 * 180.02562 * 26 23 22 47 47 H 1.09003 * 109.47191 * 299.99695 * 26 23 22 48 48 H 1.08997 * 109.42959 * 103.56044 * 27 22 21 49 49 H 1.09002 * 109.42871 * 223.45841 * 27 22 21 50 50 H 1.08998 * 109.64043 * 287.49964 * 28 19 18 51 51 H 1.08998 * 109.63813 * 48.11367 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 0.0005 5 6 1.7177 3.0234 1.4432 6 1 2.6485 2.8459 1.9818 7 8 0.6548 2.3136 2.0824 8 6 1.4095 4.4986 1.4456 9 1 1.3247 5.0340 0.5115 10 6 1.2348 5.1644 2.6402 11 7 1.3376 4.5123 3.7777 12 14 0.8521 6.9928 2.6431 13 1 -0.6191 7.1906 2.6034 14 1 1.4016 7.6116 3.8762 15 1 1.4696 7.6297 1.4522 16 7 3.5162 0.6480 0.0006 17 7 3.5212 -0.6373 0.0014 18 6 2.2888 -1.0878 0.0069 19 7 1.8977 -2.4172 0.0144 20 6 1.0150 -2.7126 -1.1212 21 6 0.7130 -4.1823 -1.1771 22 6 1.4122 -5.0776 -0.5486 23 6 1.0191 -6.5259 -0.6868 24 6 -0.2033 -6.6377 -1.5999 25 6 2.1822 -7.3145 -1.2920 26 6 0.6792 -7.0958 0.6919 27 6 2.5961 -4.7333 0.3110 28 6 3.0674 -3.3114 -0.0047 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 2.6119 3.1364 -0.5134 33 1 0.9054 2.6304 -0.5129 34 1 -0.2057 2.4261 1.6556 35 1 1.2143 4.9806 4.6181 36 1 0.0840 -2.1569 -1.0087 37 1 1.5051 -2.4118 -2.0472 38 1 -0.1277 -4.5111 -1.7700 39 1 0.0385 -6.2316 -2.5821 40 1 -0.4873 -7.6854 -1.7002 41 1 -1.0318 -6.0760 -1.1684 42 1 3.0529 -7.2347 -0.6411 43 1 1.8982 -8.3621 -1.3915 44 1 2.4244 -6.9085 -2.2741 45 1 -0.1494 -6.5341 1.1230 46 1 0.3954 -8.1434 0.5919 47 1 1.5499 -7.0161 1.3428 48 1 2.3121 -4.7967 1.3614 49 1 3.4056 -5.4353 0.1113 50 1 3.5293 -3.2893 -0.9917 51 1 3.7875 -2.9888 0.7473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355643506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:17 Heat of formation + Delta-G solvation = 25.101862 kcal Electronic energy + Delta-G solvation = -29669.761411 eV Core-core repulsion = 25797.947932 eV Total energy + Delta-G solvation = -3871.813479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.99008 -40.78175 -38.31013 -37.96378 -35.87220 -34.26878 -33.77381 -32.36380 -32.15577 -29.60440 -28.56586 -28.23692 -28.05572 -27.20894 -25.71123 -24.49385 -23.42474 -22.19817 -21.41115 -20.90341 -19.22346 -18.67648 -18.05652 -17.31875 -17.17450 -16.67545 -16.39157 -16.29773 -16.08211 -15.68643 -15.50068 -15.05715 -14.97366 -14.82593 -14.51711 -14.33982 -14.17026 -13.91694 -13.61159 -13.51025 -13.26033 -13.03750 -12.91752 -12.81510 -12.71036 -12.60146 -12.57062 -12.46747 -12.42327 -12.33985 -12.02667 -11.79297 -11.60235 -11.36979 -11.28352 -11.26510 -11.01972 -10.79769 -10.71392 -10.23943 -9.75820 -9.21537 -8.12918 -6.39674 0.80053 1.23586 1.30730 1.43244 1.45399 1.55667 1.81695 2.40784 2.61406 3.13478 3.45083 3.51411 3.66841 3.78275 3.88347 4.00007 4.10642 4.12314 4.19883 4.22159 4.27671 4.31300 4.33113 4.35891 4.49113 4.53455 4.55689 4.66941 4.71916 4.77657 4.83506 4.84247 4.86200 4.93301 4.96819 5.03352 5.08279 5.10082 5.10493 5.20857 5.32554 5.41749 5.45352 5.50511 5.62792 5.64630 5.71111 5.72597 6.01582 6.03110 6.21136 6.72592 7.33278 7.51991 7.77178 8.91716 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.002300 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.100454 B =12170.236169 C =12379.813364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.472 5.472 3 C 0.205 3.795 4 C -0.045 4.045 5 C 0.243 3.757 6 H 0.007 0.993 7 O -0.574 6.574 8 C -0.580 4.580 9 H 0.072 0.928 10 C 0.024 3.976 11 N -0.902 5.902 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.290 1.290 15 H -0.263 1.263 16 N -0.338 5.338 17 N -0.363 5.363 18 C 0.347 3.653 19 N -0.442 5.442 20 C 0.082 3.918 21 C -0.176 4.176 22 C -0.095 4.095 23 C -0.033 4.033 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.075 4.075 28 C 0.071 3.929 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.357 0.643 35 H 0.260 0.740 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.048 0.952 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -24.026 -13.064 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.166 5.166 3 C -0.065 4.065 4 C -0.085 4.085 5 C 0.184 3.816 6 H 0.025 0.975 7 O -0.379 6.379 8 C -0.618 4.618 9 H 0.091 0.909 10 C -0.178 4.178 11 N -0.539 5.539 12 Si 0.788 3.212 13 H -0.194 1.194 14 H -0.216 1.216 15 H -0.187 1.187 16 N -0.177 5.177 17 N -0.207 5.207 18 C -0.011 4.011 19 N -0.166 5.166 20 C -0.044 4.044 21 C -0.194 4.194 22 C -0.095 4.095 23 C -0.033 4.033 24 C -0.202 4.202 25 C -0.196 4.196 26 C -0.195 4.195 27 C -0.112 4.112 28 C -0.056 4.056 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.203 0.797 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.119 0.881 50 H 0.067 0.933 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.648 -24.335 -12.065 27.743 hybrid contribution -1.112 1.544 -0.320 1.929 sum -6.760 -22.792 -12.384 26.805 Atomic orbital electron populations 1.22488 0.73241 1.06444 1.05212 1.46079 1.09869 1.04520 1.56098 1.25120 0.86314 0.92677 1.02362 1.20884 1.03047 0.83617 1.00914 1.19069 0.86570 0.89902 0.86017 0.97461 1.86609 1.18977 1.73000 1.59294 1.21982 1.51506 0.94976 0.93344 0.90944 1.25948 0.93907 1.02823 0.95157 1.70245 1.47893 1.37796 0.97989 0.85502 0.78715 0.79396 0.77606 1.19364 1.21624 1.18666 1.73844 1.19443 1.03190 1.21210 1.74359 1.17447 1.03586 1.25330 1.22868 0.86836 0.88296 1.03052 1.59294 1.19240 0.95457 1.42634 1.21290 0.96594 0.97190 0.89359 1.22241 1.02304 0.91408 1.03430 1.21038 0.96138 0.95400 0.96954 1.19635 0.96307 0.90843 0.96537 1.21979 0.96689 1.02451 0.99043 1.21867 0.97262 0.99887 1.00561 1.21841 1.01501 1.00904 0.95245 1.20560 0.97222 0.93329 1.00095 1.22156 0.89789 0.92005 1.01659 0.87538 0.88352 0.88030 0.88744 0.87731 0.79749 0.93084 0.87873 0.93472 0.83628 0.92085 0.91562 0.92140 0.92296 0.91455 0.92859 0.93121 0.91487 0.92568 0.90025 0.88101 0.93346 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.25 127.77 1.18 2.72 16 2 N -0.47 -15.92 3.21 -538.17 -1.73 -17.64 16 3 C 0.20 8.37 7.09 137.64 0.98 9.35 16 4 C -0.04 -1.77 5.05 29.85 0.15 -1.62 16 5 C 0.24 12.23 2.81 29.85 0.08 12.32 16 6 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 7 O -0.57 -27.98 11.65 -148.98 -1.74 -29.72 16 8 C -0.58 -30.51 8.76 25.60 0.22 -30.28 16 9 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 10 C 0.02 1.32 5.40 84.65 0.46 1.77 16 11 N -0.90 -53.92 12.84 21.45 0.28 -53.64 16 12 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 14 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 16 N -0.34 -15.70 12.18 -49.54 -0.60 -16.31 16 17 N -0.36 -15.50 11.11 -58.00 -0.64 -16.15 16 18 C 0.35 12.27 7.18 260.11 1.87 14.14 16 19 N -0.44 -12.04 4.77 -710.49 -3.39 -15.43 16 20 C 0.08 1.65 5.34 85.39 0.46 2.10 16 21 C -0.18 -2.78 8.97 26.68 0.24 -2.54 16 22 C -0.09 -1.47 4.74 -15.40 -0.07 -1.54 16 23 C -0.03 -0.38 0.85 -52.93 -0.05 -0.43 16 24 C -0.14 -1.36 7.08 71.98 0.51 -0.85 16 25 C -0.14 -1.42 8.24 71.98 0.59 -0.83 16 26 C -0.14 -1.56 8.30 71.98 0.60 -0.96 16 27 C -0.07 -1.33 5.30 29.75 0.16 -1.17 16 28 C 0.07 1.77 5.10 86.27 0.44 2.21 16 29 H 0.11 1.69 7.97 -2.39 -0.02 1.67 16 30 H 0.10 2.36 5.50 -2.39 -0.01 2.35 16 31 H 0.10 2.07 7.47 -2.38 -0.02 2.05 16 32 H 0.09 3.76 8.14 -2.38 -0.02 3.74 16 33 H 0.10 3.38 7.92 -2.39 -0.02 3.37 16 34 H 0.36 14.28 7.67 -74.05 -0.57 13.71 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.10 1.76 5.62 -2.38 -0.01 1.75 16 37 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 38 H 0.15 1.72 5.26 -2.91 -0.02 1.70 16 39 H 0.06 0.56 7.42 -2.39 -0.02 0.54 16 40 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.06 0.58 7.41 -2.39 -0.02 0.56 16 42 H 0.06 0.60 6.81 -2.39 -0.02 0.59 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.66 7.58 -2.39 -0.02 0.64 16 48 H 0.08 1.52 8.02 -2.39 -0.02 1.50 16 49 H 0.10 1.43 6.63 -2.39 -0.02 1.42 16 50 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 51 H 0.07 2.17 7.68 -2.39 -0.02 2.15 16 Total: -1.00 -74.79 394.26 2.39 -72.41 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.36 Total: 27.74 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 7.82 Total: 4.38 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -6.08 Total: -119.17 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.74 Total: -29.72 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.79 2.39 -72.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355643506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.509 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds