Wall clock time and date at job start Tue Mar 31 2020 18:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50700 * 109.47046 * 2 1 4 4 N 1.30292 * 126.35145 * 89.97126 * 3 2 1 5 5 N 1.28522 * 110.05349 * 180.02562 * 4 3 2 6 6 C 1.31221 * 109.86171 * 0.02562 * 5 4 3 7 7 N 1.38581 * 126.47308 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00018 * 254.05018 * 7 6 5 9 9 C 1.50701 * 109.47395 * 61.56245 * 8 7 6 10 10 H 1.07997 * 120.00001 * 4.62058 * 9 8 7 11 11 C 1.37877 * 119.99838 * 184.61605 * 9 8 7 12 12 N 1.31513 * 120.00212 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 120.00235 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47014 * 89.99677 * 13 11 9 15 15 H 1.48502 * 109.47097 * 209.99915 * 13 11 9 16 16 H 1.48505 * 109.46744 * 329.99677 * 13 11 9 17 17 C 1.46906 * 110.99955 * 17.99985 * 7 6 5 18 18 C 1.52995 * 109.46954 * 167.32209 * 17 7 6 19 19 C 1.53004 * 117.52043 * 116.52840 * 18 17 7 20 20 C 1.52996 * 60.00141 * 107.47798 * 19 18 17 21 21 N 1.36441 * 107.05153 * 0.22456 * 6 5 4 22 22 C 1.46508 * 127.13716 * 179.77700 * 21 6 5 23 23 C 1.52991 * 109.47161 * 84.32092 * 22 21 6 24 24 O 1.42900 * 112.84911 * 55.33748 * 23 22 21 25 25 C 1.53778 * 113.61851 * 284.13846 * 23 22 21 26 26 C 1.53958 * 87.02204 * 220.04688 * 25 23 22 27 27 C 1.53778 * 87.10719 * 25.36394 * 26 25 23 28 28 H 1.08993 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47108 * 300.00482 * 1 2 3 30 30 H 1.09000 * 109.46753 * 60.00527 * 1 2 3 31 31 H 1.08994 * 109.47108 * 239.99517 * 2 1 3 32 32 H 1.09000 * 109.46753 * 119.99473 * 2 1 3 33 33 H 1.09004 * 109.47242 * 181.56720 * 8 7 6 34 34 H 1.09004 * 109.46991 * 301.56135 * 8 7 6 35 35 H 0.96994 * 120.00798 * 179.97438 * 12 11 9 36 36 H 1.09003 * 109.47300 * 47.32077 * 17 7 6 37 37 H 1.08998 * 109.46962 * 287.32055 * 17 7 6 38 38 H 1.09002 * 115.55220 * 330.82448 * 18 17 7 39 39 H 1.08999 * 117.49834 * 214.97389 * 19 18 17 40 40 H 1.09001 * 117.49448 * 359.97438 * 19 18 17 41 41 H 1.08995 * 117.50264 * 252.51141 * 20 19 18 42 42 H 1.09005 * 117.49779 * 107.48907 * 20 19 18 43 43 H 1.08997 * 109.47282 * 204.32869 * 22 21 6 44 44 H 1.08999 * 109.46440 * 324.32475 * 22 21 6 45 45 H 0.96693 * 114.00150 * 309.66452 * 24 23 22 46 46 H 1.08997 * 113.61516 * 334.57102 * 25 23 22 47 47 H 1.09010 * 113.61497 * 105.47304 * 25 23 22 48 48 H 1.08998 * 113.53614 * 270.80804 * 26 25 23 49 49 H 1.09005 * 113.73850 * 139.94087 * 26 25 23 50 50 H 1.09000 * 113.61286 * 220.08721 * 27 26 25 51 51 H 1.09003 * 113.61695 * 89.18673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2893 2.1491 1.0494 5 7 2.7002 3.3123 0.6887 6 6 2.7271 3.3893 -0.6210 7 7 3.1140 4.4865 -1.3739 8 6 1.9494 5.1489 -1.9761 9 6 1.0363 5.6484 -0.8862 10 1 1.3303 5.5564 0.1489 11 6 -0.1744 6.2229 -1.2106 12 7 -0.9715 6.6583 -0.2595 13 14 -0.6832 6.3814 -3.0010 14 1 -1.4313 5.1664 -3.4124 15 1 -1.5501 7.5759 -3.1654 16 1 0.5275 6.5280 -3.8485 17 6 3.8966 5.4305 -0.5650 18 6 4.5676 6.4543 -1.4828 19 6 4.1553 7.9196 -1.3283 20 6 5.5291 7.4560 -0.8401 21 7 2.2968 2.1869 -1.1014 22 6 2.1516 1.7963 -2.5060 23 6 3.4990 1.3078 -3.0413 24 8 4.0551 0.2480 -2.2605 25 6 4.4934 2.4433 -3.3356 26 6 4.8952 1.6563 -4.5964 27 6 3.4947 1.0227 -4.5525 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2836 5.9897 -2.5839 34 1 1.4114 4.4382 -2.6035 35 1 -1.8230 7.0628 -0.4877 36 1 4.6597 4.8864 -0.0083 37 1 3.2362 5.9457 0.1325 38 1 4.8052 6.1014 -2.4864 39 1 4.1214 8.5307 -2.2303 40 1 3.4054 8.1544 -0.5729 41 1 5.6834 7.3859 0.2366 42 1 6.3993 7.7621 -1.4209 43 1 1.4167 0.9954 -2.5863 44 1 1.8187 2.6549 -3.0891 45 1 4.0820 0.4310 -1.3114 46 1 4.0143 3.3983 -3.5512 47 1 5.2922 2.5262 -2.5985 48 1 5.7024 0.9440 -4.4260 49 1 5.0628 2.2848 -5.4711 50 1 3.4883 -0.0396 -4.7964 51 1 2.7420 1.5886 -5.1014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460463429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:39 Heat of formation + Delta-G solvation = 86.848491 kcal Electronic energy + Delta-G solvation = -31712.845681 eV Core-core repulsion = 27843.709736 eV Total energy + Delta-G solvation = -3869.135944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48055 -39.60674 -38.01090 -35.70698 -34.86830 -34.34787 -33.27952 -32.44782 -28.84393 -28.31064 -27.87673 -25.76594 -25.54794 -23.95306 -23.26482 -22.23949 -21.87349 -20.78005 -19.96592 -19.71517 -19.34921 -17.31575 -16.95899 -16.51117 -15.95941 -15.76427 -15.35933 -14.98379 -14.72841 -14.57493 -14.20676 -13.97626 -13.77821 -13.50089 -13.39455 -13.17371 -12.55332 -12.49134 -12.32327 -12.27081 -11.84421 -11.72481 -11.49324 -11.45596 -11.36820 -11.11187 -11.08787 -11.00233 -10.85963 -10.75587 -10.62969 -10.58522 -10.44213 -10.03039 -9.94468 -9.80496 -9.62635 -9.41233 -9.27789 -8.77458 -8.69874 -7.51366 -6.19166 -4.21014 2.31142 2.70309 3.12233 3.20831 3.22648 3.51328 3.84064 4.16887 4.25527 4.39883 4.47554 4.56980 4.61579 4.71874 4.78703 4.94812 5.08994 5.11468 5.25090 5.28652 5.35211 5.37152 5.44263 5.47927 5.55679 5.59229 5.72778 5.76382 5.78205 5.83082 5.86035 5.94258 6.00105 6.05032 6.10087 6.16900 6.27613 6.30218 6.33660 6.36839 6.40554 6.53559 6.61144 6.66597 6.78812 6.83127 7.11581 7.29518 7.43882 7.58538 7.97354 8.30985 8.90192 9.38985 9.43575 10.93446 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005759 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.218656 B = 4860.914150 C = 5735.584222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C 0.150 3.850 4 N -0.281 5.281 5 N -0.322 5.322 6 C 0.409 3.591 7 N -0.455 5.455 8 C 0.162 3.838 9 C -0.553 4.553 10 H 0.088 0.912 11 C 0.079 3.921 12 N -0.887 5.887 13 Si 0.868 3.132 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.106 3.894 18 C -0.137 4.137 19 C -0.172 4.172 20 C -0.184 4.184 21 N -0.477 5.477 22 C 0.094 3.906 23 C 0.093 3.907 24 O -0.539 6.539 25 C -0.149 4.149 26 C -0.136 4.136 27 C -0.121 4.121 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.018 0.982 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.377 0.623 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -10.196 -8.455 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 C -0.117 4.117 4 N -0.121 5.121 5 N -0.165 5.165 6 C 0.053 3.947 7 N -0.178 5.178 8 C 0.037 3.963 9 C -0.591 4.591 10 H 0.106 0.894 11 C -0.124 4.124 12 N -0.525 5.525 13 Si 0.694 3.306 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.021 4.021 18 C -0.156 4.156 19 C -0.209 4.209 20 C -0.221 4.221 21 N -0.173 5.173 22 C -0.030 4.030 23 C 0.051 3.949 24 O -0.345 6.345 25 C -0.187 4.187 26 C -0.173 4.173 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.226 0.774 46 H 0.121 0.879 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.520 -10.112 -7.939 15.997 hybrid contribution -1.379 0.491 -1.248 1.924 sum 8.141 -9.620 -9.187 15.596 Atomic orbital electron populations 1.21745 0.94041 1.01796 1.02981 1.19903 0.96414 0.86802 1.03899 1.24535 1.07009 0.97514 0.82663 1.73877 1.14864 0.99196 1.24141 1.74677 1.22337 1.11965 1.07531 1.22446 0.96598 0.86779 0.88914 1.59253 1.22627 1.05960 1.30004 1.20342 0.86601 0.93790 0.95606 1.21624 1.02326 1.40412 0.94754 0.89366 1.24885 0.96186 0.94653 0.96710 1.69911 1.10667 1.39725 1.32171 0.86988 0.79223 0.78105 0.86235 1.20397 1.20918 1.18785 1.21468 0.95401 0.91777 0.93446 1.22122 1.02311 0.90788 1.00345 1.23016 0.97489 0.97199 1.03167 1.22918 0.93661 1.04800 1.00760 1.45967 1.52349 1.11555 1.07387 1.22484 0.98527 1.02430 0.79573 1.22645 0.91400 0.88787 0.92105 1.86410 1.84369 1.41280 1.22419 1.23582 0.99246 0.98174 0.97693 1.22796 0.96551 0.99445 0.98530 1.22965 0.98571 1.02156 0.92148 0.91840 0.91663 0.92844 0.90196 0.88742 0.93329 0.96374 0.92554 0.91381 0.90796 0.87872 0.89535 0.88050 0.89080 0.89421 0.88735 0.87593 0.77421 0.87907 0.91093 0.90150 0.91282 0.90440 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.90 37.16 0.37 -1.43 16 2 C -0.03 -0.37 6.09 -27.88 -0.17 -0.54 16 3 C 0.15 2.56 6.36 -154.02 -0.98 1.58 16 4 N -0.28 -5.92 12.18 32.99 0.40 -5.52 16 5 N -0.32 -7.29 11.21 30.31 0.34 -6.95 16 6 C 0.41 8.22 5.76 -318.89 -1.84 6.39 16 7 N -0.46 -8.68 3.73 -175.88 -0.66 -9.34 16 8 C 0.16 3.51 3.96 -4.98 -0.02 3.49 16 9 C -0.55 -14.72 8.24 -34.44 -0.28 -15.00 16 10 H 0.09 2.69 6.54 -52.49 -0.34 2.35 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 13 Si 0.87 20.20 27.38 -169.99 -4.65 15.55 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.26 -5.72 6.68 56.52 0.38 -5.35 16 17 C 0.11 1.99 4.52 -3.82 -0.02 1.97 16 18 C -0.14 -2.17 4.90 -90.62 -0.44 -2.62 16 19 C -0.17 -2.71 10.18 -26.73 -0.27 -2.98 16 20 C -0.18 -2.52 10.25 -26.73 -0.27 -2.79 16 21 N -0.48 -8.11 2.40 -114.09 -0.27 -8.38 16 22 C 0.09 1.29 5.51 -4.04 -0.02 1.27 16 23 C 0.09 1.13 1.52 -89.81 -0.14 0.99 16 24 O -0.54 -6.88 13.20 -35.23 -0.47 -7.34 16 25 C -0.15 -1.86 6.95 -25.83 -0.18 -2.04 16 26 C -0.14 -1.41 8.02 -25.83 -0.21 -1.61 16 27 C -0.12 -1.22 7.47 -25.92 -0.19 -1.41 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.84 7.57 -51.93 -0.39 0.44 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.05 6.69 -51.93 -0.35 0.70 16 34 H 0.02 0.40 5.41 -51.93 -0.28 0.11 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.07 1.65 6.04 -51.93 -0.31 1.33 16 38 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.81 8.03 -51.93 -0.42 1.40 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.14 7.61 -51.93 -0.40 0.74 16 44 H 0.11 1.55 6.16 -51.93 -0.32 1.23 16 45 H 0.38 4.82 7.61 45.56 0.35 5.17 16 46 H 0.10 1.38 7.47 -51.93 -0.39 1.00 16 47 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -31.50 401.20 -11.17 -42.67 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.92 Total: 11.72 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.76 Total: -12.64 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.58 Total: -56.00 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.47 Total: -7.34 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.65 Total: 15.55 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.50 -11.17 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460463429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.519 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds