Wall clock time and date at job start Tue Mar 31 2020 18:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50700 * 109.47046 * 2 1 4 4 N 1.30292 * 126.35145 * 89.97126 * 3 2 1 5 5 N 1.28522 * 110.05349 * 180.02562 * 4 3 2 6 6 C 1.31221 * 109.86171 * 0.02562 * 5 4 3 7 7 N 1.38581 * 126.47308 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00018 * 254.05018 * 7 6 5 9 9 C 1.50701 * 109.47395 * 61.56245 * 8 7 6 10 10 H 1.07997 * 120.00001 * 4.62058 * 9 8 7 11 11 C 1.37877 * 119.99838 * 184.61605 * 9 8 7 12 12 N 1.31513 * 120.00212 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 120.00235 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47014 * 89.99677 * 13 11 9 15 15 H 1.48502 * 109.47097 * 209.99915 * 13 11 9 16 16 H 1.48505 * 109.46744 * 329.99677 * 13 11 9 17 17 C 1.46906 * 110.99955 * 17.99985 * 7 6 5 18 18 C 1.52995 * 109.46954 * 167.32209 * 17 7 6 19 19 C 1.53004 * 117.52043 * 116.52840 * 18 17 7 20 20 C 1.52996 * 60.00141 * 107.47798 * 19 18 17 21 21 N 1.36441 * 107.05153 * 0.22456 * 6 5 4 22 22 C 1.46508 * 127.13716 * 179.77700 * 21 6 5 23 23 C 1.52991 * 109.47161 * 84.32092 * 22 21 6 24 24 O 1.42900 * 112.84911 * 55.33748 * 23 22 21 25 25 C 1.53778 * 113.61851 * 284.13846 * 23 22 21 26 26 C 1.53958 * 87.02204 * 220.04688 * 25 23 22 27 27 C 1.53778 * 87.10719 * 25.36394 * 26 25 23 28 28 H 1.08993 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47108 * 300.00482 * 1 2 3 30 30 H 1.09000 * 109.46753 * 60.00527 * 1 2 3 31 31 H 1.08994 * 109.47108 * 239.99517 * 2 1 3 32 32 H 1.09000 * 109.46753 * 119.99473 * 2 1 3 33 33 H 1.09004 * 109.47242 * 181.56720 * 8 7 6 34 34 H 1.09004 * 109.46991 * 301.56135 * 8 7 6 35 35 H 0.96994 * 120.00798 * 179.97438 * 12 11 9 36 36 H 1.09003 * 109.47300 * 47.32077 * 17 7 6 37 37 H 1.08998 * 109.46962 * 287.32055 * 17 7 6 38 38 H 1.09002 * 115.55220 * 330.82448 * 18 17 7 39 39 H 1.08999 * 117.49834 * 214.97389 * 19 18 17 40 40 H 1.09001 * 117.49448 * 359.97438 * 19 18 17 41 41 H 1.08995 * 117.50264 * 252.51141 * 20 19 18 42 42 H 1.09005 * 117.49779 * 107.48907 * 20 19 18 43 43 H 1.08997 * 109.47282 * 204.32869 * 22 21 6 44 44 H 1.08999 * 109.46440 * 324.32475 * 22 21 6 45 45 H 0.96693 * 114.00150 * 309.66452 * 24 23 22 46 46 H 1.08997 * 113.61516 * 334.57102 * 25 23 22 47 47 H 1.09010 * 113.61497 * 105.47304 * 25 23 22 48 48 H 1.08998 * 113.53614 * 270.80804 * 26 25 23 49 49 H 1.09005 * 113.73850 * 139.94087 * 26 25 23 50 50 H 1.09000 * 113.61286 * 220.08721 * 27 26 25 51 51 H 1.09003 * 113.61695 * 89.18673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2893 2.1491 1.0494 5 7 2.7002 3.3123 0.6887 6 6 2.7271 3.3893 -0.6210 7 7 3.1140 4.4865 -1.3739 8 6 1.9494 5.1489 -1.9761 9 6 1.0363 5.6484 -0.8862 10 1 1.3303 5.5564 0.1489 11 6 -0.1744 6.2229 -1.2106 12 7 -0.9715 6.6583 -0.2595 13 14 -0.6832 6.3814 -3.0010 14 1 -1.4313 5.1664 -3.4124 15 1 -1.5501 7.5759 -3.1654 16 1 0.5275 6.5280 -3.8485 17 6 3.8966 5.4305 -0.5650 18 6 4.5676 6.4543 -1.4828 19 6 4.1553 7.9196 -1.3283 20 6 5.5291 7.4560 -0.8401 21 7 2.2968 2.1869 -1.1014 22 6 2.1516 1.7963 -2.5060 23 6 3.4990 1.3078 -3.0413 24 8 4.0551 0.2480 -2.2605 25 6 4.4934 2.4433 -3.3356 26 6 4.8952 1.6563 -4.5964 27 6 3.4947 1.0227 -4.5525 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2836 5.9897 -2.5839 34 1 1.4114 4.4382 -2.6035 35 1 -1.8230 7.0628 -0.4877 36 1 4.6597 4.8864 -0.0083 37 1 3.2362 5.9457 0.1325 38 1 4.8052 6.1014 -2.4864 39 1 4.1214 8.5307 -2.2303 40 1 3.4054 8.1544 -0.5729 41 1 5.6834 7.3859 0.2366 42 1 6.3993 7.7621 -1.4209 43 1 1.4167 0.9954 -2.5863 44 1 1.8187 2.6549 -3.0891 45 1 4.0820 0.4310 -1.3114 46 1 4.0143 3.3983 -3.5512 47 1 5.2922 2.5262 -2.5985 48 1 5.7024 0.9440 -4.4260 49 1 5.0628 2.2848 -5.4711 50 1 3.4883 -0.0396 -4.7964 51 1 2.7420 1.5886 -5.1014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460463429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:37 Heat of formation + Delta-G solvation = 67.849249 kcal Electronic energy + Delta-G solvation = -31713.669550 eV Core-core repulsion = 27843.709736 eV Total energy + Delta-G solvation = -3869.959813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.94799 -40.57014 -39.49710 -37.11084 -35.99115 -35.48169 -34.76620 -34.21737 -30.54670 -29.52517 -29.43151 -27.18524 -26.62749 -25.21435 -24.39504 -23.83831 -23.13096 -22.11816 -21.34911 -20.82758 -20.62135 -19.13387 -18.32218 -17.89323 -17.31656 -17.05199 -16.66737 -16.26627 -15.91949 -15.88752 -15.66130 -15.25628 -15.06119 -14.82782 -14.55101 -14.41350 -14.19350 -13.90533 -13.45074 -13.39922 -13.29255 -13.18222 -12.85641 -12.71486 -12.50543 -12.39866 -12.31524 -12.21410 -12.16549 -12.15780 -12.07241 -11.82014 -11.76773 -11.66706 -11.28393 -11.18547 -11.00467 -10.84640 -10.73062 -10.49829 -10.33724 -9.16188 -8.32430 -6.39618 0.87171 1.28324 1.31502 1.36943 1.42475 1.96207 2.28575 2.83218 2.91337 3.01964 3.07691 3.39217 3.49267 3.60340 3.70672 3.87374 3.94161 3.96996 4.03594 4.07123 4.15725 4.24570 4.30010 4.34322 4.46745 4.51750 4.54504 4.61173 4.72128 4.80905 4.83336 4.85381 4.91895 4.93735 4.95631 5.02211 5.08157 5.08938 5.10479 5.12897 5.16563 5.28364 5.28527 5.29402 5.34743 5.44815 5.47662 5.73347 5.86980 6.18463 6.41280 6.44473 6.70726 7.24600 7.90854 8.84554 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005759 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.218656 B = 4860.914150 C = 5735.584222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C 0.171 3.829 4 N -0.331 5.331 5 N -0.369 5.369 6 C 0.392 3.608 7 N -0.432 5.432 8 C 0.174 3.826 9 C -0.546 4.546 10 H 0.033 0.967 11 C 0.013 3.987 12 N -0.947 5.947 13 Si 0.940 3.060 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.229 1.229 17 C 0.115 3.885 18 C -0.144 4.144 19 C -0.183 4.183 20 C -0.157 4.157 21 N -0.471 5.471 22 C 0.086 3.914 23 C 0.092 3.908 24 O -0.540 6.540 25 C -0.155 4.155 26 C -0.127 4.127 27 C -0.109 4.109 28 H 0.100 0.900 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.375 0.625 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.188 -12.075 -12.686 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.098 4.098 4 N -0.169 5.169 5 N -0.212 5.212 6 C 0.034 3.966 7 N -0.154 5.154 8 C 0.048 3.952 9 C -0.585 4.585 10 H 0.051 0.949 11 C -0.185 4.185 12 N -0.587 5.587 13 Si 0.762 3.238 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.152 1.152 17 C -0.013 4.013 18 C -0.163 4.163 19 C -0.220 4.220 20 C -0.194 4.194 21 N -0.166 5.166 22 C -0.036 4.036 23 C 0.050 3.950 24 O -0.346 6.346 25 C -0.193 4.193 26 C -0.164 4.164 27 C -0.147 4.147 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.120 0.880 45 H 0.223 0.777 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.106 0.894 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.543 -12.018 -12.180 20.098 hybrid contribution -1.669 1.001 0.239 1.961 sum 8.874 -11.017 -11.941 18.512 Atomic orbital electron populations 1.21729 0.93618 1.03656 1.01187 1.20190 0.96497 0.83872 1.06102 1.25481 1.03850 0.98655 0.81800 1.73779 1.17421 0.99513 1.26227 1.74548 1.23765 1.13346 1.09519 1.22566 0.97436 0.87917 0.88671 1.59357 1.21136 1.05397 1.29557 1.20153 0.86547 0.94385 0.94145 1.21765 1.03184 1.39728 0.93776 0.94921 1.25900 0.96113 0.94251 1.02199 1.70110 1.11457 1.41830 1.35295 0.85832 0.79923 0.78131 0.79882 1.19253 1.21311 1.15201 1.21326 0.94397 0.92032 0.93521 1.22090 1.03534 0.89931 1.00746 1.22968 0.98330 0.97383 1.03351 1.23012 0.93550 1.01829 1.01004 1.46170 1.51250 1.10367 1.08839 1.22839 1.00410 1.02995 0.77365 1.22777 0.90183 0.88732 0.93356 1.86419 1.84390 1.41442 1.22343 1.23565 0.98868 0.98238 0.98592 1.22753 0.96791 0.99097 0.97794 1.23009 0.98680 1.03103 0.89889 0.88136 0.94443 0.93641 0.87184 0.87266 0.92129 0.95037 0.92687 0.91735 0.95546 0.85974 0.87506 0.91543 0.89463 0.86061 0.86406 0.88009 0.77702 0.88723 0.93067 0.90347 0.89696 0.89429 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.90 71.99 0.71 -2.54 16 2 C -0.03 -0.61 6.09 29.85 0.18 -0.43 16 3 C 0.17 5.83 6.36 137.64 0.87 6.70 16 4 N -0.33 -14.60 12.18 -49.54 -0.60 -15.20 16 5 N -0.37 -17.83 11.21 -58.01 -0.65 -18.48 16 6 C 0.39 16.28 5.76 260.12 1.50 17.78 16 7 N -0.43 -16.77 3.73 -710.36 -2.65 -19.42 16 8 C 0.17 7.51 3.96 85.56 0.34 7.84 16 9 C -0.55 -30.36 8.24 25.60 0.21 -30.15 16 10 H 0.03 2.16 6.54 -2.91 -0.02 2.14 16 11 C 0.01 0.76 5.47 84.65 0.46 1.23 16 12 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 13 Si 0.94 41.28 27.38 68.60 1.88 43.16 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.23 -8.76 6.68 99.48 0.66 -8.10 16 17 C 0.11 4.52 4.52 86.30 0.39 4.91 16 18 C -0.14 -4.51 4.90 -10.79 -0.05 -4.56 16 19 C -0.18 -5.75 10.18 30.59 0.31 -5.44 16 20 C -0.16 -4.08 10.25 30.59 0.31 -3.77 16 21 N -0.47 -15.86 2.40 -514.86 -1.23 -17.09 16 22 C 0.09 2.17 5.51 86.37 0.48 2.64 16 23 C 0.09 1.98 1.52 -10.27 -0.02 1.96 16 24 O -0.54 -12.45 13.20 -148.98 -1.97 -14.41 16 25 C -0.15 -3.54 6.95 31.18 0.22 -3.32 16 26 C -0.13 -2.20 8.02 31.18 0.25 -1.95 16 27 C -0.11 -1.75 7.47 31.12 0.23 -1.52 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 1.89 7.57 -2.39 -0.02 1.87 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.51 6.69 -2.38 -0.02 2.50 16 34 H 0.03 1.30 5.41 -2.38 -0.01 1.29 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 37 H 0.03 1.29 6.04 -2.39 -0.01 1.27 16 38 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 41 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.12 2.41 7.61 -2.39 -0.02 2.39 16 44 H 0.10 2.69 6.16 -2.39 -0.01 2.67 16 45 H 0.37 8.98 7.61 -74.06 -0.56 8.42 16 46 H 0.09 2.33 7.47 -2.39 -0.02 2.31 16 47 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.11 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -75.71 401.20 1.80 -73.91 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.32 Total: 37.49 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 6.40 Total: -10.61 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -4.84 Total: -129.53 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.97 Total: -14.41 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.16 kcal Total: -75.71 1.80 -73.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460463429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.759 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds