Wall clock time and date at job start Tue Mar 31 2020 19:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 C 1.50707 * 109.47463 * 119.99822 * 2 1 3 5 5 N 1.34660 * 125.80115 * 299.96128 * 4 2 1 6 6 H 0.96996 * 124.84537 * 0.02562 * 5 4 2 7 7 C 1.36442 * 110.29659 * 180.02562 * 5 4 2 8 8 C 1.34482 * 108.85946 * 359.97438 * 7 5 4 9 9 C 1.36766 * 125.80131 * 119.99607 * 4 2 1 10 10 C 1.47259 * 126.94416 * 359.97233 * 9 4 2 11 11 O 1.21632 * 119.99864 * 0.02562 * 10 9 4 12 12 N 1.34779 * 120.00523 * 180.02562 * 10 9 4 13 13 C 1.46492 * 120.00404 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47328 * 179.97438 * 13 12 10 15 15 N 1.46897 * 109.47649 * 179.97438 * 14 13 12 16 16 C 1.46901 * 110.99954 * 294.30378 * 15 14 13 17 17 C 1.53232 * 109.34387 * 172.74233 * 16 15 14 18 18 N 1.47082 * 108.52257 * 53.83011 * 17 16 15 19 19 C 1.36937 * 120.88491 * 128.83577 * 18 17 16 20 20 H 1.07995 * 120.00189 * 206.56396 * 19 18 17 21 21 C 1.38813 * 119.99552 * 26.56604 * 19 18 17 22 22 N 1.31611 * 120.00499 * 17.02481 * 21 19 18 23 23 Si 1.86800 * 119.99467 * 197.02741 * 21 19 18 24 24 H 1.48499 * 109.47429 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47115 * 119.99836 * 23 21 19 26 26 H 1.48504 * 109.46993 * 239.99729 * 23 21 19 27 27 C 1.47083 * 118.23286 * 308.81828 * 18 17 16 28 28 C 1.46898 * 111.00582 * 170.00275 * 15 14 13 29 29 H 1.08998 * 109.47349 * 60.00617 * 1 2 3 30 30 H 1.09007 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47234 * 299.99868 * 1 2 3 32 32 H 1.08997 * 109.47392 * 239.99792 * 2 1 3 33 33 H 1.08992 * 109.47442 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46687 * 300.00350 * 3 2 1 35 35 H 1.08997 * 109.47021 * 59.99565 * 3 2 1 36 36 H 1.08001 * 125.56879 * 180.02562 * 7 5 4 37 37 H 1.08002 * 126.83657 * 180.26370 * 8 7 5 38 38 H 0.97000 * 119.99227 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47197 * 299.99224 * 13 12 10 40 40 H 1.09000 * 109.47316 * 59.99482 * 13 12 10 41 41 H 1.08999 * 109.47441 * 300.00311 * 14 13 12 42 42 H 1.09000 * 109.46897 * 59.99774 * 14 13 12 43 43 H 1.08998 * 109.49387 * 292.70528 * 16 15 14 44 44 H 1.09003 * 109.49073 * 52.78243 * 16 15 14 45 45 H 1.09010 * 109.62983 * 294.12524 * 17 16 15 46 46 H 1.09002 * 109.63604 * 173.53933 * 17 16 15 47 47 H 0.97003 * 120.00121 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.62844 * 291.46745 * 27 18 17 49 49 H 1.09007 * 109.78902 * 170.98447 * 27 18 17 50 50 H 1.09005 * 109.48837 * 307.21408 * 28 15 14 51 51 H 1.09002 * 109.49250 * 67.29329 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7808 -0.3532 2.5043 6 1 1.2424 0.4086 2.7702 7 6 2.3913 -1.2159 3.3672 8 6 3.0495 -2.1486 2.6563 9 6 2.8219 -1.8270 1.2433 10 6 3.3387 -2.5591 0.0747 11 8 3.0696 -2.1788 -1.0488 12 7 4.1099 -3.6505 0.2501 13 6 4.6244 -4.3783 -0.9124 14 6 5.4646 -5.5664 -0.4395 15 7 5.9800 -6.2967 -1.6051 16 6 4.8854 -6.9143 -2.3657 17 6 5.4416 -7.5087 -3.6638 18 7 6.5515 -8.4128 -3.3258 19 6 6.5888 -9.6923 -3.8123 20 1 7.1144 -10.4622 -3.2670 21 6 5.9512 -9.9997 -5.0064 22 7 5.6050 -9.0370 -5.8344 23 14 5.5846 -11.7798 -5.4380 24 1 6.0718 -12.6637 -4.3488 25 1 4.1194 -11.9576 -5.6024 26 1 6.2715 -12.1331 -6.7063 27 6 7.6203 -7.9059 -2.4518 28 6 6.9782 -7.2959 -1.2013 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.3517 -1.1594 4.4450 37 1 3.6274 -2.9728 3.0478 38 1 4.3247 -3.9535 1.1461 39 1 3.7899 -4.7395 -1.5134 40 1 5.2435 -3.7123 -1.5134 41 1 6.2991 -5.2050 0.1614 42 1 4.8457 -6.2325 0.1617 43 1 4.4293 -7.7048 -1.7698 44 1 4.1362 -6.1590 -2.6032 45 1 5.8052 -6.7074 -4.3073 46 1 4.6580 -8.0667 -4.1764 47 1 5.1591 -9.2518 -6.6687 48 1 8.1932 -7.1429 -2.9787 49 1 8.2797 -8.7243 -2.1626 50 1 7.7469 -6.8173 -0.5943 51 1 6.4930 -8.0811 -0.6216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479935737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:03 Heat of formation + Delta-G solvation = 30.208197 kcal Electronic energy + Delta-G solvation = -28637.681502 eV Core-core repulsion = 24766.089450 eV Total energy + Delta-G solvation = -3871.592052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.62119 -39.16050 -38.06745 -35.65032 -35.12211 -33.81477 -31.67287 -31.10239 -29.88905 -28.99490 -28.53093 -27.49505 -25.92213 -23.66173 -22.84899 -22.42691 -21.98282 -21.27005 -20.56407 -19.58344 -19.04331 -17.79835 -16.76675 -16.08109 -15.94286 -15.50101 -14.99453 -14.84799 -14.75654 -14.48524 -14.32717 -14.19657 -13.82538 -13.46505 -13.44552 -13.38023 -13.32326 -13.20095 -12.86814 -12.79782 -12.55730 -12.42730 -11.56012 -11.50338 -11.45760 -11.35578 -11.20421 -11.14669 -11.01583 -10.72388 -10.39483 -10.25667 -10.00909 -9.74342 -9.70483 -9.54624 -9.16835 -8.88663 -8.47126 -8.44356 -7.82272 -6.62491 -5.73777 -3.14975 1.59346 2.16180 2.80738 3.36192 3.40099 3.47615 3.49795 3.53986 4.32627 4.49234 4.55229 4.59633 4.71189 4.84218 4.92515 5.10525 5.14728 5.15437 5.21335 5.27883 5.43722 5.45489 5.46348 5.48698 5.55459 5.61487 5.70344 5.80730 5.89301 5.91596 5.96302 6.04349 6.09468 6.17005 6.20050 6.28003 6.38204 6.45935 6.57327 6.59132 6.68692 6.74340 6.97118 7.13069 7.29301 7.58182 7.65174 7.70149 7.74678 7.85990 8.38793 8.47711 9.25464 9.89024 10.47641 11.34997 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.002005 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.689774 B =13961.423553 C =14615.835302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.143 4.143 4 C 0.119 3.881 5 N -0.551 5.551 6 H 0.414 0.586 7 C -0.018 4.018 8 C -0.168 4.168 9 C -0.233 4.233 10 C 0.590 3.410 11 O -0.548 6.548 12 N -0.724 5.724 13 C 0.123 3.877 14 C 0.045 3.955 15 N -0.529 5.529 16 C 0.031 3.969 17 C 0.178 3.822 18 N -0.596 5.596 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.149 3.851 28 C 0.046 3.954 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.168 0.832 37 H 0.144 0.856 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.089 0.911 47 H 0.253 0.747 48 H 0.026 0.974 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 19.870 20.531 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.201 4.201 4 C 0.000 4.000 5 N -0.146 5.146 6 H 0.250 0.750 7 C -0.145 4.145 8 C -0.193 4.193 9 C -0.243 4.243 10 C 0.379 3.621 11 O -0.428 6.428 12 N -0.375 5.375 13 C 0.000 4.000 14 C -0.084 4.084 15 N -0.254 5.254 16 C -0.098 4.098 17 C 0.052 3.948 18 N -0.319 5.319 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.022 3.978 28 C -0.083 4.083 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.185 0.815 37 H 0.162 0.838 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.437 20.494 19.304 29.391 hybrid contribution -0.727 -1.345 1.097 1.882 sum -9.164 19.149 20.401 29.442 Atomic orbital electron populations 1.21829 0.94263 1.02355 1.01676 1.20280 0.95733 0.95909 0.95387 1.21826 1.01744 0.94852 1.01676 1.20283 0.98421 0.95789 0.85474 1.41533 1.41995 1.25599 1.05437 0.74980 1.21696 1.02609 0.94470 0.95773 1.22025 1.04585 1.01230 0.91435 1.20144 1.09995 1.01097 0.93071 1.17311 0.77540 0.79557 0.87714 1.90706 1.59416 1.67601 1.25071 1.45710 1.52567 1.29169 1.10075 1.21340 0.97963 0.93207 0.87521 1.22195 0.97890 0.94855 0.93430 1.61863 1.14769 1.28338 1.20475 1.22998 0.92342 0.96410 0.98029 1.20872 0.91428 0.92229 0.90303 1.44140 1.20280 1.11424 1.56094 1.19226 1.32187 0.84904 1.01738 0.91626 1.25030 1.02323 0.97303 0.95177 1.70039 1.44252 1.30552 1.09842 0.86236 0.77811 0.84889 0.77915 1.20352 1.21596 1.21739 1.20969 0.90964 0.96029 0.89860 1.22621 0.94259 0.92687 0.98750 0.91604 0.92125 0.93504 0.85403 0.92134 0.91619 0.93502 0.81454 0.83793 0.76921 0.91154 0.90523 0.90931 0.95062 0.95648 0.91704 0.95436 0.89331 0.93659 0.95616 0.92608 0.91996 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.15 0.34 -0.73 16 2 C -0.05 -0.50 3.24 -91.77 -0.30 -0.80 16 3 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 4 C 0.12 1.15 5.68 -81.88 -0.47 0.68 16 5 N -0.55 -3.65 5.90 -9.11 -0.05 -3.70 16 6 H 0.41 1.55 8.96 -40.82 -0.37 1.18 16 7 C -0.02 -0.12 11.89 -16.83 -0.20 -0.32 16 8 C -0.17 -1.44 10.56 -37.50 -0.40 -1.83 16 9 C -0.23 -2.65 6.29 -103.35 -0.65 -3.31 16 10 C 0.59 8.23 7.81 -12.59 -0.10 8.14 16 11 O -0.55 -9.39 14.47 5.25 0.08 -9.31 16 12 N -0.72 -8.85 5.55 -61.44 -0.34 -9.19 16 13 C 0.12 1.76 5.61 -4.05 -0.02 1.73 16 14 C 0.05 0.63 5.08 -3.83 -0.02 0.61 16 15 N -0.53 -9.50 4.63 -234.33 -1.08 -10.58 16 16 C 0.03 0.63 5.46 -3.70 -0.02 0.61 16 17 C 0.18 4.41 5.42 -3.60 -0.02 4.39 16 18 N -0.60 -15.40 3.04 -172.01 -0.52 -15.92 16 19 C -0.25 -7.01 9.63 -15.06 -0.15 -7.16 16 20 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 21 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 22 N -0.90 -26.70 11.15 55.49 0.62 -26.08 16 23 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.15 3.20 6.69 -3.60 -0.02 3.18 16 28 C 0.05 0.83 5.62 -3.70 -0.02 0.81 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.13 1.58 5.50 -51.93 -0.29 1.30 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.14 0.94 7.70 -52.49 -0.40 0.54 16 38 H 0.40 3.75 7.60 -40.82 -0.31 3.44 16 39 H 0.07 1.12 6.40 -51.93 -0.33 0.79 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 42 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.21 6.16 -51.93 -0.32 0.89 16 45 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 46 H 0.09 2.42 6.12 -51.93 -0.32 2.11 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 1.15 7.96 -51.92 -0.41 0.73 16 50 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 51 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -33.77 402.20 -10.68 -44.45 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.62 Total: 2.12 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.78 Total: 5.20 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -1.38 Total: -65.47 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.77 -10.68 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479935737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.659 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds