Wall clock time and date at job start Tue Mar 31 2020 19:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 C 1.50707 * 109.47463 * 119.99822 * 2 1 3 5 5 N 1.34660 * 125.80115 * 299.96128 * 4 2 1 6 6 H 0.96996 * 124.84537 * 0.02562 * 5 4 2 7 7 C 1.36442 * 110.29659 * 180.02562 * 5 4 2 8 8 C 1.34482 * 108.85946 * 359.97438 * 7 5 4 9 9 C 1.36766 * 125.80131 * 119.99607 * 4 2 1 10 10 C 1.47259 * 126.94416 * 359.97233 * 9 4 2 11 11 O 1.21632 * 119.99864 * 0.02562 * 10 9 4 12 12 N 1.34779 * 120.00523 * 180.02562 * 10 9 4 13 13 C 1.46492 * 120.00404 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47328 * 179.97438 * 13 12 10 15 15 N 1.46897 * 109.47649 * 179.97438 * 14 13 12 16 16 C 1.46901 * 110.99954 * 294.30378 * 15 14 13 17 17 C 1.53232 * 109.34387 * 172.74233 * 16 15 14 18 18 N 1.47082 * 108.52257 * 53.83011 * 17 16 15 19 19 C 1.36937 * 120.88491 * 128.83577 * 18 17 16 20 20 H 1.07995 * 120.00189 * 206.56396 * 19 18 17 21 21 C 1.38813 * 119.99552 * 26.56604 * 19 18 17 22 22 N 1.31611 * 120.00499 * 17.02481 * 21 19 18 23 23 Si 1.86800 * 119.99467 * 197.02741 * 21 19 18 24 24 H 1.48499 * 109.47429 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47115 * 119.99836 * 23 21 19 26 26 H 1.48504 * 109.46993 * 239.99729 * 23 21 19 27 27 C 1.47083 * 118.23286 * 308.81828 * 18 17 16 28 28 C 1.46898 * 111.00582 * 170.00275 * 15 14 13 29 29 H 1.08998 * 109.47349 * 60.00617 * 1 2 3 30 30 H 1.09007 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47234 * 299.99868 * 1 2 3 32 32 H 1.08997 * 109.47392 * 239.99792 * 2 1 3 33 33 H 1.08992 * 109.47442 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46687 * 300.00350 * 3 2 1 35 35 H 1.08997 * 109.47021 * 59.99565 * 3 2 1 36 36 H 1.08001 * 125.56879 * 180.02562 * 7 5 4 37 37 H 1.08002 * 126.83657 * 180.26370 * 8 7 5 38 38 H 0.97000 * 119.99227 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47197 * 299.99224 * 13 12 10 40 40 H 1.09000 * 109.47316 * 59.99482 * 13 12 10 41 41 H 1.08999 * 109.47441 * 300.00311 * 14 13 12 42 42 H 1.09000 * 109.46897 * 59.99774 * 14 13 12 43 43 H 1.08998 * 109.49387 * 292.70528 * 16 15 14 44 44 H 1.09003 * 109.49073 * 52.78243 * 16 15 14 45 45 H 1.09010 * 109.62983 * 294.12524 * 17 16 15 46 46 H 1.09002 * 109.63604 * 173.53933 * 17 16 15 47 47 H 0.97003 * 120.00121 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.62844 * 291.46745 * 27 18 17 49 49 H 1.09007 * 109.78902 * 170.98447 * 27 18 17 50 50 H 1.09005 * 109.48837 * 307.21408 * 28 15 14 51 51 H 1.09002 * 109.49250 * 67.29329 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7808 -0.3532 2.5043 6 1 1.2424 0.4086 2.7702 7 6 2.3913 -1.2159 3.3672 8 6 3.0495 -2.1486 2.6563 9 6 2.8219 -1.8270 1.2433 10 6 3.3387 -2.5591 0.0747 11 8 3.0696 -2.1788 -1.0488 12 7 4.1099 -3.6505 0.2501 13 6 4.6244 -4.3783 -0.9124 14 6 5.4646 -5.5664 -0.4395 15 7 5.9800 -6.2967 -1.6051 16 6 4.8854 -6.9143 -2.3657 17 6 5.4416 -7.5087 -3.6638 18 7 6.5515 -8.4128 -3.3258 19 6 6.5888 -9.6923 -3.8123 20 1 7.1144 -10.4622 -3.2670 21 6 5.9512 -9.9997 -5.0064 22 7 5.6050 -9.0370 -5.8344 23 14 5.5846 -11.7798 -5.4380 24 1 6.0718 -12.6637 -4.3488 25 1 4.1194 -11.9576 -5.6024 26 1 6.2715 -12.1331 -6.7063 27 6 7.6203 -7.9059 -2.4518 28 6 6.9782 -7.2959 -1.2013 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.3517 -1.1594 4.4450 37 1 3.6274 -2.9728 3.0478 38 1 4.3247 -3.9535 1.1461 39 1 3.7899 -4.7395 -1.5134 40 1 5.2435 -3.7123 -1.5134 41 1 6.2991 -5.2050 0.1614 42 1 4.8457 -6.2325 0.1617 43 1 4.4293 -7.7048 -1.7698 44 1 4.1362 -6.1590 -2.6032 45 1 5.8052 -6.7074 -4.3073 46 1 4.6580 -8.0667 -4.1764 47 1 5.1591 -9.2518 -6.6687 48 1 8.1932 -7.1429 -2.9787 49 1 8.2797 -8.7243 -2.1626 50 1 7.7469 -6.8173 -0.5943 51 1 6.4930 -8.0811 -0.6216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479935737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:01 Heat of formation + Delta-G solvation = 6.256538 kcal Electronic energy + Delta-G solvation = -28638.720124 eV Core-core repulsion = 24766.089450 eV Total energy + Delta-G solvation = -3872.630674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.27269 -40.28940 -39.57256 -36.84539 -36.13857 -35.27081 -33.32391 -32.09891 -31.65039 -30.15705 -29.39157 -28.08283 -27.62158 -25.19305 -24.34544 -23.82979 -22.69775 -22.49794 -21.22809 -20.88093 -20.46499 -18.73923 -18.42458 -17.27003 -16.95062 -16.76444 -16.58352 -16.02090 -15.81900 -15.50529 -15.37963 -15.32132 -15.20995 -15.04879 -14.85853 -14.78612 -14.33249 -14.04301 -13.97818 -13.77540 -13.45669 -13.20853 -13.08586 -13.00725 -12.81197 -12.64136 -12.54003 -12.20545 -12.14858 -12.09156 -12.02413 -11.85467 -11.83874 -11.55443 -11.40301 -10.76629 -10.59995 -10.13062 -9.68924 -9.29788 -9.09936 -8.68996 -7.87449 -5.32503 0.77022 1.45959 1.47140 1.58276 1.59372 2.06918 2.49157 2.51818 2.60018 3.15254 3.28441 3.67873 3.70631 3.86177 3.96350 4.06420 4.12863 4.20191 4.30490 4.35411 4.35794 4.47054 4.49912 4.55698 4.56302 4.65572 4.68772 4.71393 4.81210 4.85315 4.88057 4.94318 4.99800 5.00596 5.05016 5.11602 5.18323 5.21058 5.31125 5.36963 5.38871 5.54582 5.61488 5.67288 5.83009 6.03312 6.14720 6.23463 6.37260 6.62544 6.74382 7.12641 7.38706 7.83718 8.38325 9.19714 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.002005 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.689774 B =13961.423553 C =14615.835302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.138 4.138 4 C 0.112 3.888 5 N -0.536 5.536 6 H 0.430 0.570 7 C -0.001 4.001 8 C -0.185 4.185 9 C -0.269 4.269 10 C 0.581 3.419 11 O -0.593 6.593 12 N -0.712 5.712 13 C 0.133 3.867 14 C 0.056 3.944 15 N -0.543 5.543 16 C 0.050 3.950 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.261 4.261 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.142 3.858 28 C 0.058 3.942 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.208 0.792 37 H 0.162 0.838 38 H 0.413 0.587 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.045 0.955 43 H 0.023 0.977 44 H 0.073 0.927 45 H -0.005 1.005 46 H 0.056 0.944 47 H 0.250 0.750 48 H 0.015 0.985 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 20.561 24.630 33.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.008 4.008 5 N -0.132 5.132 6 H 0.269 0.731 7 C -0.128 4.128 8 C -0.208 4.208 9 C -0.279 4.279 10 C 0.372 3.628 11 O -0.476 6.476 12 N -0.363 5.363 13 C 0.009 3.991 14 C -0.072 4.072 15 N -0.268 5.268 16 C -0.079 4.079 17 C 0.059 3.941 18 N -0.339 5.339 19 C -0.391 4.391 20 H 0.088 0.912 21 C -0.251 4.251 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.016 3.984 28 C -0.071 4.071 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.225 0.775 37 H 0.179 0.821 38 H 0.250 0.750 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.014 0.986 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.033 0.967 49 H 0.083 0.917 50 H 0.119 0.881 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.692 21.195 23.487 32.809 hybrid contribution -0.603 -1.474 -0.141 1.599 sum -9.295 19.721 23.346 31.943 Atomic orbital electron populations 1.21791 0.92901 1.01709 1.03200 1.20180 0.96844 0.96556 0.94019 1.21785 1.00728 0.93832 1.03191 1.20290 0.98217 0.95546 0.86700 1.41532 1.41483 1.25919 1.04273 0.73054 1.22319 1.00382 0.92858 0.97277 1.22293 1.05833 1.02747 0.89955 1.20166 1.11905 1.02307 0.93538 1.17864 0.77169 0.79678 0.88098 1.90688 1.61059 1.68818 1.26998 1.45522 1.52023 1.28574 1.10231 1.21066 0.96897 0.93174 0.88009 1.22167 0.98974 0.94045 0.91985 1.61749 1.14249 1.28234 1.22572 1.22607 0.92908 0.96425 0.95986 1.20596 0.90494 0.90862 0.92111 1.44432 1.21720 1.11148 1.56615 1.19590 1.31722 0.86113 1.01709 0.91155 1.25851 1.02660 1.01304 0.95276 1.70209 1.45369 1.32638 1.10194 0.85167 0.77188 0.80210 0.77638 1.18858 1.21730 1.21925 1.21164 0.90388 0.96201 0.90638 1.22481 0.94893 0.92881 0.96862 0.91086 0.93814 0.90963 0.89286 0.93653 0.91101 0.90975 0.77512 0.82080 0.75024 0.93432 0.92455 0.87987 0.93630 0.95870 0.90841 0.98641 0.92607 0.94120 0.96734 0.91732 0.88089 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.18 71.98 0.66 -1.32 16 2 C -0.06 -1.06 3.24 -11.54 -0.04 -1.09 16 3 C -0.14 -1.92 9.18 71.98 0.66 -1.26 16 4 C 0.11 2.07 5.68 41.78 0.24 2.31 16 5 N -0.54 -5.52 5.90 -182.72 -1.08 -6.60 16 6 H 0.43 1.60 8.96 -92.71 -0.83 0.77 16 7 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 8 C -0.18 -2.69 10.56 23.62 0.25 -2.44 16 9 C -0.27 -5.99 6.29 -19.04 -0.12 -6.11 16 10 C 0.58 16.71 7.81 86.61 0.68 17.39 16 11 O -0.59 -21.77 14.47 -4.13 -0.06 -21.83 16 12 N -0.71 -17.08 5.55 -466.54 -2.59 -19.67 16 13 C 0.13 3.79 5.61 86.38 0.48 4.28 16 14 C 0.06 1.45 5.08 86.30 0.44 1.89 16 15 N -0.54 -18.85 4.63 -895.27 -4.14 -23.00 16 16 C 0.05 2.04 5.46 86.38 0.47 2.51 16 17 C 0.19 9.61 5.42 86.35 0.47 10.08 16 18 N -0.61 -32.38 3.04 -698.12 -2.12 -34.50 16 19 C -0.26 -14.79 9.63 84.03 0.81 -13.98 16 20 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 21 C -0.06 -3.22 4.93 84.86 0.42 -2.80 16 22 N -0.94 -57.67 11.15 21.65 0.24 -57.43 16 23 Si 0.97 45.98 29.59 68.60 2.03 48.01 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 C 0.14 6.04 6.69 86.35 0.58 6.62 16 28 C 0.06 1.94 5.62 86.38 0.49 2.42 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.09 2.41 5.50 -2.39 -0.01 2.40 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.21 0.24 8.06 -2.91 -0.02 0.21 16 37 H 0.16 1.62 7.70 -2.91 -0.02 1.59 16 38 H 0.41 7.05 7.60 -92.71 -0.70 6.35 16 39 H 0.05 1.57 6.40 -2.39 -0.02 1.56 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.10 2.10 7.97 -2.39 -0.02 2.08 16 42 H 0.05 1.09 8.12 -2.39 -0.02 1.08 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 2.84 6.16 -2.39 -0.01 2.83 16 45 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 46 H 0.06 3.23 6.12 -2.39 -0.01 3.21 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 2.59 7.96 -2.38 -0.02 2.57 16 50 H 0.10 2.65 7.99 -2.38 -0.02 2.63 16 51 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.22 402.20 -0.86 -79.08 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -0.60 Total: 16.48 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.47 Total: 19.46 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -9.69 Total: -141.20 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -78.22 -0.86 -79.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479935737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.332 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds