Wall clock time and date at job start Tue Mar 31 2020 18:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46961 * 2 1 4 4 C 1.34679 * 126.59412 * 84.97819 * 3 2 1 5 5 N 1.34127 * 108.02261 * 180.02562 * 4 3 2 6 6 C 1.30501 * 109.25358 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.64392 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47430 * 305.02448 * 7 6 5 9 9 O 1.21286 * 119.99848 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99990 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63385 * 359.97438 * 10 8 7 12 12 C 1.53184 * 108.78173 * 233.61409 * 11 10 8 13 13 C 1.53045 * 109.31240 * 305.36707 * 12 11 10 14 14 C 1.53045 * 109.53841 * 61.36213 * 13 12 11 15 15 H 1.09004 * 109.49474 * 58.58528 * 14 13 12 16 16 C 1.53000 * 109.49648 * 178.64987 * 14 13 12 17 17 N 1.46505 * 109.46707 * 184.93305 * 16 14 13 18 18 C 1.46496 * 119.99656 * 90.00590 * 17 16 14 19 19 C 1.36931 * 119.99999 * 269.99665 * 17 16 14 20 20 H 1.07999 * 120.00027 * 22.44537 * 19 17 16 21 21 C 1.38814 * 120.00053 * 202.43343 * 19 17 16 22 22 N 1.31626 * 119.99763 * 13.77056 * 21 19 17 23 23 Si 1.86794 * 120.00165 * 193.76646 * 21 19 17 24 24 H 1.48502 * 109.47207 * 90.00515 * 23 21 19 25 25 H 1.48505 * 109.47046 * 210.00514 * 23 21 19 26 26 H 1.48497 * 109.47153 * 330.00189 * 23 21 19 27 27 C 1.46931 * 120.62695 * 180.02562 * 10 8 7 28 28 N 1.35047 * 108.70287 * 0.26603 * 6 5 4 29 29 H 0.97001 * 126.39475 * 179.74252 * 28 6 5 30 30 H 1.08997 * 109.47412 * 300.00331 * 1 2 3 31 31 H 1.09005 * 109.47160 * 60.00085 * 1 2 3 32 32 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46992 * 239.99963 * 2 1 3 34 34 H 1.08996 * 109.46963 * 120.00031 * 2 1 3 35 35 H 1.08004 * 125.98218 * 0.03500 * 4 3 2 36 36 H 1.09002 * 109.47037 * 185.02281 * 7 6 5 37 37 H 1.09001 * 109.47288 * 65.03043 * 7 6 5 38 38 H 1.09005 * 109.58295 * 113.82598 * 11 10 8 39 39 H 1.09000 * 109.58175 * 353.40607 * 11 10 8 40 40 H 1.08992 * 109.50396 * 185.41211 * 12 11 10 41 41 H 1.09004 * 109.49465 * 65.31348 * 12 11 10 42 42 H 1.09001 * 109.45825 * 301.34209 * 13 12 11 43 43 H 1.09000 * 109.44997 * 181.37134 * 13 12 11 44 44 H 1.08995 * 109.47280 * 304.93792 * 16 14 13 45 45 H 1.09002 * 109.46743 * 64.94054 * 16 14 13 46 46 H 1.09002 * 109.47193 * 95.12523 * 18 17 16 47 47 H 1.09000 * 109.47467 * 215.12651 * 18 17 16 48 48 H 1.09001 * 109.47402 * 335.12583 * 18 17 16 49 49 H 0.97001 * 119.99673 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.59043 * 6.59721 * 27 10 8 51 51 H 1.08996 * 109.58474 * 246.16737 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 1.0772 5 7 2.6691 3.3957 0.6516 6 6 2.7822 3.3722 -0.6483 7 6 3.2652 4.5115 -1.5086 8 6 2.4339 5.7375 -1.2317 9 8 1.5372 5.6908 -0.4164 10 7 2.6863 6.8857 -1.8908 11 6 3.7688 6.9578 -2.8816 12 6 4.6911 8.1263 -2.5204 13 6 3.8620 9.4072 -2.4010 14 6 2.8277 9.2452 -1.2846 15 1 3.3370 9.0295 -0.3453 16 6 2.0219 10.5382 -1.1435 17 7 1.1136 10.4251 0.0004 18 6 1.5570 10.8450 1.3320 19 6 -0.1497 9.9270 -0.1751 20 1 -0.3684 9.2963 -1.0241 21 6 -1.1494 10.2325 0.7383 22 7 -0.9702 11.2022 1.6101 23 14 -2.7488 9.2676 0.7301 24 1 -2.6247 8.0960 1.6341 25 1 -3.8554 10.1398 1.1991 26 1 -3.0378 8.8001 -0.6494 27 6 1.8848 8.0895 -1.6312 28 7 2.3897 2.1598 -1.0953 29 1 2.3673 1.8668 -2.0197 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0183 1.9343 2.1037 36 1 3.1710 4.2384 -2.5596 37 1 4.3101 4.7216 -1.2801 38 1 3.3461 7.1189 -3.8734 39 1 4.3364 6.0274 -2.8708 40 1 5.4428 8.2509 -3.2997 41 1 5.1827 7.9212 -1.5694 42 1 3.3510 9.5983 -3.3446 43 1 4.5196 10.2448 -2.1679 44 1 2.7023 11.3750 -0.9859 45 1 1.4431 10.7065 -2.0517 46 1 1.2378 11.8711 1.5145 47 1 1.1193 10.1891 2.0845 48 1 2.6441 10.7874 1.3880 49 1 -1.6689 11.4160 2.2482 50 1 1.2096 7.9059 -0.7955 51 1 1.3082 8.3433 -2.5207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480077415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:41 Heat of formation + Delta-G solvation = 36.057576 kcal Electronic energy + Delta-G solvation = -29723.456389 eV Core-core repulsion = 25852.117985 eV Total energy + Delta-G solvation = -3871.338404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.16966 -39.84208 -37.43649 -35.40792 -34.36758 -33.04604 -32.45304 -31.57374 -31.28192 -29.94862 -27.36720 -25.90033 -25.58561 -24.86920 -23.49747 -22.47975 -21.31528 -20.96379 -20.56090 -19.54906 -18.71617 -17.54414 -16.88996 -16.51841 -15.63778 -15.48521 -14.88936 -14.86746 -14.60136 -14.47367 -14.26305 -13.84459 -13.69281 -13.49128 -13.33143 -13.19853 -13.05283 -12.86429 -12.52424 -12.46438 -12.27114 -11.97811 -11.83166 -11.62773 -11.45696 -11.11253 -10.95902 -10.76005 -10.68924 -10.50989 -10.26518 -10.18621 -10.06065 -9.97084 -9.81417 -9.77716 -9.55420 -9.40938 -8.39297 -8.28342 -8.23407 -6.60414 -5.58906 -3.04466 1.91212 2.81982 2.94146 3.13275 3.44591 3.50952 3.56907 3.60125 4.24899 4.57962 4.62283 4.67124 4.69333 4.80862 4.85711 5.00376 5.02275 5.12920 5.19574 5.29115 5.36625 5.41943 5.46986 5.49833 5.55173 5.57481 5.62311 5.72326 5.81436 5.88610 5.93385 5.97422 6.16410 6.18443 6.20350 6.26056 6.37849 6.55682 6.66574 6.75043 6.84383 6.90765 6.97179 7.07844 7.27586 7.52790 7.72824 7.84747 7.93893 8.15812 8.52872 8.53358 9.37148 10.01397 10.49645 11.45785 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003613 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.862885 B = 7748.716216 C = 9911.509630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.043 4.043 3 C -0.028 4.028 4 C -0.019 4.019 5 N -0.454 5.454 6 C 0.220 3.780 7 C -0.053 4.053 8 C 0.512 3.488 9 O -0.503 6.503 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.120 4.120 15 H 0.066 0.934 16 C 0.159 3.841 17 N -0.601 5.601 18 C 0.164 3.836 19 C -0.250 4.250 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.908 5.908 23 Si 0.899 3.101 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.124 3.876 28 N -0.564 5.564 29 H 0.413 0.587 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.167 0.833 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.038 0.962 45 H 0.046 0.954 46 H 0.029 0.971 47 H 0.040 0.960 48 H -0.005 1.005 49 H 0.251 0.749 50 H 0.115 0.885 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.908 -18.738 -11.462 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.143 4.143 4 C -0.168 4.168 5 N -0.172 5.172 6 C -0.044 4.044 7 C -0.094 4.094 8 C 0.297 3.703 9 O -0.376 6.376 10 N -0.349 5.349 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.143 4.143 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.324 5.324 18 C 0.019 3.981 19 C -0.379 4.379 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.553 5.553 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.206 1.206 27 C 0.004 3.996 28 N -0.168 5.168 29 H 0.251 0.749 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.184 0.816 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.014 0.986 49 H 0.061 0.939 50 H 0.133 0.867 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.451 -18.002 -10.288 24.186 hybrid contribution -1.019 -1.286 -0.955 1.898 sum 11.433 -19.288 -11.243 25.083 Atomic orbital electron populations 1.21791 0.94419 1.01735 1.02773 1.19950 0.96068 0.89093 1.03102 1.21202 1.09259 0.96534 0.87341 1.22134 1.05938 0.90028 0.98673 1.70281 1.17201 1.21569 1.08114 1.22283 1.04426 0.86542 0.91174 1.19980 1.01353 0.89866 0.98241 1.20010 0.84966 0.83809 0.81533 1.90836 1.31020 1.83505 1.32204 1.48249 1.34495 1.11350 1.40852 1.21700 0.88766 0.99121 0.92077 1.21904 0.97735 0.95622 1.01904 1.21555 0.97687 0.96542 0.99444 1.22243 0.96182 0.98313 0.97521 0.91557 1.20708 0.92114 0.92508 0.91633 1.43879 1.11307 1.74621 1.02555 1.20764 0.91620 0.99364 0.86352 1.19160 0.85672 1.23029 1.10044 0.91350 1.24955 0.97609 0.97266 0.99641 1.70078 1.33527 1.29323 1.22393 0.86331 0.83366 0.79502 0.77845 1.21370 1.21918 1.20598 1.21827 0.93296 0.81970 1.02553 1.43060 1.51762 1.12589 1.09408 0.74936 0.91857 0.92867 0.92140 0.91507 0.89535 0.81567 0.88043 0.86641 0.91569 0.90616 0.91303 0.91614 0.92127 0.92022 0.94343 0.93540 0.95225 0.94120 0.98601 0.93924 0.86732 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.04 -0.32 6.49 -27.89 -0.18 -0.50 16 3 C -0.03 -0.32 6.49 -81.60 -0.53 -0.84 16 4 C -0.02 -0.27 11.79 -17.81 -0.21 -0.48 16 5 N -0.45 -7.84 10.58 -10.81 -0.11 -7.96 16 6 C 0.22 3.05 6.96 -155.41 -1.08 1.97 16 7 C -0.05 -0.60 4.67 -29.04 -0.14 -0.73 16 8 C 0.51 8.52 7.69 -10.99 -0.08 8.44 16 9 O -0.50 -11.35 14.96 5.55 0.08 -11.27 16 10 N -0.61 -9.27 2.97 -172.81 -0.51 -9.78 16 11 C 0.11 1.08 6.34 -3.72 -0.02 1.05 16 12 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 13 C -0.11 -1.46 5.17 -26.68 -0.14 -1.60 16 14 C -0.12 -2.10 2.54 -90.53 -0.23 -2.33 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 16 C 0.16 3.25 5.15 -4.04 -0.02 3.23 16 17 N -0.60 -15.52 2.81 -181.12 -0.51 -16.02 16 18 C 0.16 4.26 8.98 59.84 0.54 4.79 16 19 C -0.25 -7.06 8.25 -15.06 -0.12 -7.19 16 20 H 0.07 1.90 6.81 -52.49 -0.36 1.54 16 21 C 0.00 0.10 5.09 -17.43 -0.09 0.01 16 22 N -0.91 -27.68 10.72 55.49 0.59 -27.09 16 23 Si 0.90 23.52 29.58 -169.99 -5.03 18.49 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.12 2.31 4.66 -3.74 -0.02 2.30 16 28 N -0.56 -5.97 6.15 -6.54 -0.04 -6.01 16 29 H 0.41 2.81 8.96 -40.82 -0.37 2.44 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.17 2.04 8.06 -52.48 -0.42 1.61 16 36 H 0.10 0.73 7.94 -51.93 -0.41 0.32 16 37 H 0.12 1.08 7.69 -51.93 -0.40 0.68 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 45 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 46 H 0.03 0.82 7.35 -51.93 -0.38 0.44 16 47 H 0.04 1.15 7.32 -51.93 -0.38 0.77 16 48 H 0.00 -0.11 8.03 -51.93 -0.42 -0.52 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 50 H 0.11 2.74 5.41 -51.93 -0.28 2.46 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -37.84 400.99 -10.38 -48.22 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.77 Total: -0.42 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.12 Total: 5.80 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.58 Total: -66.86 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.03 Total: 18.49 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.84 -10.38 -48.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480077415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.276 kcal (2) G-P(sol) polarization free energy of solvation -37.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds