Wall clock time and date at job start Tue Mar 31 2020 20:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47412 * 239.99941 * 2 1 3 5 5 C 1.50696 * 109.47131 * 119.99562 * 2 1 3 6 6 C 1.39678 * 126.07004 * 75.00206 * 5 2 1 7 7 C 1.38398 * 105.36026 * 180.02562 * 6 5 2 8 8 C 1.47163 * 126.88192 * 180.02562 * 7 6 5 9 9 O 1.21628 * 120.00120 * 25.61946 * 8 7 6 10 10 N 1.34784 * 120.00169 * 205.61895 * 8 7 6 11 11 C 1.46924 * 120.62844 * 6.96791 * 10 8 7 12 12 C 1.53192 * 108.77770 * 233.59023 * 11 10 8 13 13 C 1.53039 * 109.30951 * 305.36236 * 12 11 10 14 14 C 1.53046 * 109.53445 * 61.37056 * 13 12 11 15 15 C 1.46919 * 120.63102 * 186.95077 * 10 8 7 16 16 H 1.09004 * 109.58528 * 246.19382 * 15 10 8 17 17 C 1.52996 * 109.70755 * 6.55221 * 15 10 8 18 18 N 1.46495 * 109.47262 * 282.16099 * 17 15 10 19 19 C 1.36940 * 119.99948 * 185.49212 * 18 17 15 20 20 H 1.07998 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99998 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99710 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00065 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47240 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47253 * 119.99992 * 23 21 19 26 26 H 1.48494 * 109.47173 * 239.99926 * 23 21 19 27 27 N 1.36594 * 106.23582 * 0.26224 * 7 6 5 28 28 H 0.97001 * 125.19383 * 179.73734 * 27 7 6 29 29 N 1.28450 * 109.62005 * 359.55274 * 27 7 6 30 30 H 1.09001 * 109.46974 * 300.00072 * 1 2 3 31 31 H 1.09001 * 109.47195 * 60.00129 * 1 2 3 32 32 H 1.08999 * 109.46748 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46961 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47144 * 299.99903 * 3 2 1 35 35 H 1.09001 * 109.47419 * 60.00200 * 3 2 1 36 36 H 1.09004 * 109.46950 * 300.00074 * 4 2 1 37 37 H 1.09001 * 109.46997 * 59.99810 * 4 2 1 38 38 H 1.08995 * 109.46987 * 180.02562 * 4 2 1 39 39 H 1.07996 * 127.31647 * 0.06103 * 6 5 2 40 40 H 1.08999 * 109.58389 * 113.80081 * 11 10 8 41 41 H 1.09007 * 109.70418 * 353.44769 * 11 10 8 42 42 H 1.09003 * 109.49480 * 185.41476 * 12 11 10 43 43 H 1.08996 * 109.52666 * 65.33497 * 12 11 10 44 44 H 1.08997 * 109.46484 * 301.34825 * 13 12 11 45 45 H 1.08999 * 109.44768 * 181.37802 * 13 12 11 46 46 H 1.08998 * 109.49374 * 178.68273 * 14 13 12 47 47 H 1.08998 * 109.50054 * 58.58133 * 14 13 12 48 48 H 1.09000 * 109.46792 * 42.16368 * 17 15 10 49 49 H 1.09005 * 109.47154 * 162.15636 * 17 15 10 50 50 H 0.96997 * 120.00269 * 5.49315 * 18 17 15 51 51 H 0.96997 * 120.00148 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 2.0310 -2.0911 1.4411 7 6 2.5814 -2.2707 2.6982 8 6 2.8034 -3.5501 3.3906 9 8 2.9453 -4.5729 2.7478 10 7 2.8495 -3.5886 4.7371 11 6 2.5298 -2.3947 5.5315 12 6 3.6898 -2.1168 6.4927 13 6 3.9679 -3.3701 7.3258 14 6 4.3722 -4.5203 6.4007 15 6 3.2199 -4.8254 5.4384 16 1 2.3632 -5.1973 6.0005 17 6 3.6648 -5.8804 4.4236 18 7 2.4864 -6.4678 3.7814 19 6 2.6311 -7.5180 2.9146 20 1 3.6139 -7.9135 2.7047 21 6 1.5145 -8.0749 2.3064 22 7 0.3167 -7.5932 2.5626 23 14 1.7118 -9.5079 1.1246 24 1 3.1500 -9.8588 1.0077 25 1 0.9560 -10.6793 1.6363 26 1 1.1863 -9.1246 -0.2103 27 7 2.8724 -1.0221 3.1696 28 1 3.2673 -0.8291 4.0343 29 7 2.5468 -0.1429 2.2917 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2489 39 1 1.6764 -2.8560 0.7662 40 1 1.6168 -2.5685 6.1010 41 1 2.3906 -1.5396 4.8699 42 1 3.4247 -1.2918 7.1539 43 1 4.5806 -1.8540 5.9223 44 1 3.0693 -3.6464 7.8774 45 1 4.7768 -3.1672 8.0277 46 1 4.5927 -5.4060 6.9965 47 1 5.2564 -4.2352 5.8307 48 1 4.2961 -5.4137 3.6675 49 1 4.2274 -6.6617 4.9348 50 1 1.6037 -6.1129 3.9701 51 1 -0.4637 -7.9826 2.1379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480351825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:49 Heat of formation + Delta-G solvation = 88.162935 kcal Electronic energy + Delta-G solvation = -30667.477813 eV Core-core repulsion = 26798.398867 eV Total energy + Delta-G solvation = -3869.078946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.56645 -40.00531 -37.08703 -36.95791 -34.55110 -32.90665 -32.13088 -30.94133 -30.24831 -29.80399 -27.31028 -27.23895 -26.31660 -24.60476 -23.23769 -22.85032 -22.57530 -21.04965 -20.64400 -19.81050 -18.63339 -17.64909 -16.77309 -16.01731 -15.87537 -15.27399 -14.95838 -14.93085 -14.51412 -14.29601 -14.07712 -13.97294 -13.75867 -13.68975 -13.38493 -13.24686 -12.97008 -12.62770 -12.41581 -12.30245 -12.18655 -12.11809 -11.78909 -11.65393 -11.25771 -11.19451 -11.07849 -11.02661 -11.00997 -10.77241 -10.73306 -10.70095 -10.43707 -10.34834 -9.85657 -9.51431 -8.99647 -8.91760 -8.76540 -8.62093 -8.20358 -6.56331 -5.54200 -2.75406 1.59432 2.69573 2.85979 3.12843 3.55353 3.60947 3.63101 3.64969 4.37364 4.52323 4.61432 4.69401 4.75064 4.79735 4.86489 4.99363 5.04937 5.19681 5.20394 5.27315 5.39157 5.49195 5.60835 5.63420 5.63706 5.69245 5.70240 5.79209 5.79834 5.82876 5.84981 5.90378 5.90595 5.93759 5.95678 6.05268 6.08054 6.19356 6.25576 6.31394 6.35628 6.47576 6.57533 6.67620 6.83703 7.03467 7.19669 7.69530 7.88848 8.11905 8.63032 8.67372 9.75457 10.35237 10.69988 11.69784 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.004638 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.291449 B = 6035.142840 C = 8828.663775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.018 3.982 3 C -0.133 4.133 4 C -0.140 4.140 5 C 0.041 3.959 6 C -0.157 4.157 7 C -0.016 4.016 8 C 0.549 3.451 9 O -0.423 6.423 10 N -0.612 5.612 11 C 0.093 3.907 12 C -0.139 4.139 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.144 3.856 16 H 0.074 0.926 17 C 0.157 3.843 18 N -0.701 5.701 19 C -0.210 4.210 20 H 0.065 0.935 21 C -0.020 4.020 22 N -0.937 5.937 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.294 1.294 27 N -0.392 5.392 28 H 0.442 0.558 29 N -0.284 5.284 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.161 0.839 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.019 0.981 50 H 0.380 0.620 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 19.586 4.733 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 C -0.190 4.190 4 C -0.198 4.198 5 C -0.118 4.118 6 C -0.185 4.185 7 C -0.144 4.144 8 C 0.333 3.667 9 O -0.288 6.288 10 N -0.350 5.350 11 C -0.032 4.032 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.167 4.167 15 C 0.041 3.959 16 H 0.091 0.909 17 C 0.030 3.970 18 N -0.343 5.343 19 C -0.342 4.342 20 H 0.083 0.917 21 C -0.215 4.215 22 N -0.588 5.588 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.222 1.222 27 N -0.114 5.114 28 H 0.293 0.707 29 N -0.116 5.116 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.179 0.821 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.037 0.963 50 H 0.214 0.786 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.513 19.834 4.695 21.114 hybrid contribution -0.311 -1.235 -0.345 1.319 sum 5.202 18.599 4.350 19.796 Atomic orbital electron populations 1.21873 0.93419 1.02580 1.01737 1.18874 0.95343 0.94567 0.89595 1.21753 1.01150 0.94503 1.01609 1.21886 1.01326 1.00827 0.95764 1.21823 1.02961 0.91695 0.95321 1.22007 1.04570 0.96357 0.95570 1.22178 1.08443 0.86575 0.97249 1.17227 0.80881 0.86606 0.82025 1.91315 1.42506 1.29880 1.65098 1.47830 1.70573 1.11828 1.04745 1.22018 0.98343 0.88297 0.94517 1.22001 0.98538 0.98735 0.98479 1.21485 1.01685 0.94650 0.97618 1.21937 0.98468 0.98759 0.97503 1.21550 0.96702 0.83946 0.93678 0.90856 1.20923 0.92355 0.91557 0.92196 1.42178 1.03141 1.37303 1.51710 1.19196 0.92682 1.05493 1.16798 0.91673 1.24608 0.95421 1.00226 1.01214 1.69668 0.97122 1.44071 1.47915 0.86178 0.76891 0.82458 0.81139 1.20829 1.22303 1.22198 1.44436 1.47605 1.03187 1.16133 0.70724 1.72985 1.17778 1.20365 1.00488 0.92620 0.92091 0.91963 0.92641 0.92653 0.92167 0.91783 0.92076 0.92464 0.82115 0.90867 0.90481 0.90707 0.91651 0.91575 0.91718 0.90457 0.91546 0.94410 0.96331 0.78641 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.46 37.16 0.31 -1.14 16 2 C 0.02 0.21 0.96 -155.66 -0.15 0.06 16 3 C -0.13 -1.33 8.04 37.16 0.30 -1.03 16 4 C -0.14 -1.50 8.20 37.16 0.30 -1.20 16 5 C 0.04 0.58 5.65 -82.47 -0.47 0.12 16 6 C -0.16 -2.57 10.21 -38.98 -0.40 -2.97 16 7 C -0.02 -0.27 6.52 -82.06 -0.54 -0.80 16 8 C 0.55 10.23 7.37 -12.63 -0.09 10.14 16 9 O -0.42 -10.04 11.14 5.25 0.06 -9.98 16 10 N -0.61 -9.36 2.97 -166.58 -0.50 -9.86 16 11 C 0.09 1.01 5.90 -3.71 -0.02 0.99 16 12 C -0.14 -1.17 6.04 -26.61 -0.16 -1.33 16 13 C -0.12 -1.08 5.88 -26.69 -0.16 -1.23 16 14 C -0.13 -1.53 5.30 -26.61 -0.14 -1.67 16 15 C 0.14 2.33 2.89 -67.60 -0.20 2.13 16 16 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 17 C 0.16 3.33 4.93 -4.05 -0.02 3.31 16 18 N -0.70 -18.61 3.37 -59.91 -0.20 -18.81 16 19 C -0.21 -6.20 9.86 -15.06 -0.15 -6.35 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 22 N -0.94 -29.70 13.06 55.49 0.72 -28.97 16 23 Si 0.90 23.68 29.55 -169.99 -5.02 18.65 16 24 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 N -0.39 -5.12 5.72 33.48 0.19 -4.92 16 28 H 0.44 4.47 6.35 -190.45 -1.21 3.26 16 29 N -0.28 -3.93 11.48 33.64 0.39 -3.54 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.16 2.78 7.79 -52.49 -0.41 2.38 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.79 3.49 -51.93 -0.18 0.61 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.04 0.88 6.04 -51.93 -0.31 0.56 16 49 H 0.02 0.40 8.03 -51.93 -0.42 -0.02 16 50 H 0.38 10.80 7.52 -40.82 -0.31 10.49 16 51 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -34.91 393.48 -9.63 -44.54 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -9.54 Total: 8.63 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.67 Total: -1.67 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.60 Total: -66.10 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.06 Total: -9.98 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.91 -9.63 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480351825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.708 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds