Wall clock time and date at job start Tue Mar 31 2020 20:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47412 * 239.99941 * 2 1 3 5 5 C 1.50696 * 109.47131 * 119.99562 * 2 1 3 6 6 C 1.39678 * 126.07004 * 75.00206 * 5 2 1 7 7 C 1.38398 * 105.36026 * 180.02562 * 6 5 2 8 8 C 1.47163 * 126.88192 * 180.02562 * 7 6 5 9 9 O 1.21628 * 120.00120 * 25.61946 * 8 7 6 10 10 N 1.34784 * 120.00169 * 205.61895 * 8 7 6 11 11 C 1.46924 * 120.62844 * 6.96791 * 10 8 7 12 12 C 1.53192 * 108.77770 * 233.59023 * 11 10 8 13 13 C 1.53039 * 109.30951 * 305.36236 * 12 11 10 14 14 C 1.53046 * 109.53445 * 61.37056 * 13 12 11 15 15 C 1.46919 * 120.63102 * 186.95077 * 10 8 7 16 16 H 1.09004 * 109.58528 * 246.19382 * 15 10 8 17 17 C 1.52996 * 109.70755 * 6.55221 * 15 10 8 18 18 N 1.46495 * 109.47262 * 282.16099 * 17 15 10 19 19 C 1.36940 * 119.99948 * 185.49212 * 18 17 15 20 20 H 1.07998 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99998 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99710 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00065 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47240 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47253 * 119.99992 * 23 21 19 26 26 H 1.48494 * 109.47173 * 239.99926 * 23 21 19 27 27 N 1.36594 * 106.23582 * 0.26224 * 7 6 5 28 28 H 0.97001 * 125.19383 * 179.73734 * 27 7 6 29 29 N 1.28450 * 109.62005 * 359.55274 * 27 7 6 30 30 H 1.09001 * 109.46974 * 300.00072 * 1 2 3 31 31 H 1.09001 * 109.47195 * 60.00129 * 1 2 3 32 32 H 1.08999 * 109.46748 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46961 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47144 * 299.99903 * 3 2 1 35 35 H 1.09001 * 109.47419 * 60.00200 * 3 2 1 36 36 H 1.09004 * 109.46950 * 300.00074 * 4 2 1 37 37 H 1.09001 * 109.46997 * 59.99810 * 4 2 1 38 38 H 1.08995 * 109.46987 * 180.02562 * 4 2 1 39 39 H 1.07996 * 127.31647 * 0.06103 * 6 5 2 40 40 H 1.08999 * 109.58389 * 113.80081 * 11 10 8 41 41 H 1.09007 * 109.70418 * 353.44769 * 11 10 8 42 42 H 1.09003 * 109.49480 * 185.41476 * 12 11 10 43 43 H 1.08996 * 109.52666 * 65.33497 * 12 11 10 44 44 H 1.08997 * 109.46484 * 301.34825 * 13 12 11 45 45 H 1.08999 * 109.44768 * 181.37802 * 13 12 11 46 46 H 1.08998 * 109.49374 * 178.68273 * 14 13 12 47 47 H 1.08998 * 109.50054 * 58.58133 * 14 13 12 48 48 H 1.09000 * 109.46792 * 42.16368 * 17 15 10 49 49 H 1.09005 * 109.47154 * 162.15636 * 17 15 10 50 50 H 0.96997 * 120.00269 * 5.49315 * 18 17 15 51 51 H 0.96997 * 120.00148 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 2.0310 -2.0911 1.4411 7 6 2.5814 -2.2707 2.6982 8 6 2.8034 -3.5501 3.3906 9 8 2.9453 -4.5729 2.7478 10 7 2.8495 -3.5886 4.7371 11 6 2.5298 -2.3947 5.5315 12 6 3.6898 -2.1168 6.4927 13 6 3.9679 -3.3701 7.3258 14 6 4.3722 -4.5203 6.4007 15 6 3.2199 -4.8254 5.4384 16 1 2.3632 -5.1973 6.0005 17 6 3.6648 -5.8804 4.4236 18 7 2.4864 -6.4678 3.7814 19 6 2.6311 -7.5180 2.9146 20 1 3.6139 -7.9135 2.7047 21 6 1.5145 -8.0749 2.3064 22 7 0.3167 -7.5932 2.5626 23 14 1.7118 -9.5079 1.1246 24 1 3.1500 -9.8588 1.0077 25 1 0.9560 -10.6793 1.6363 26 1 1.1863 -9.1246 -0.2103 27 7 2.8724 -1.0221 3.1696 28 1 3.2673 -0.8291 4.0343 29 7 2.5468 -0.1429 2.2917 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2489 39 1 1.6764 -2.8560 0.7662 40 1 1.6168 -2.5685 6.1010 41 1 2.3906 -1.5396 4.8699 42 1 3.4247 -1.2918 7.1539 43 1 4.5806 -1.8540 5.9223 44 1 3.0693 -3.6464 7.8774 45 1 4.7768 -3.1672 8.0277 46 1 4.5927 -5.4060 6.9965 47 1 5.2564 -4.2352 5.8307 48 1 4.2961 -5.4137 3.6675 49 1 4.2274 -6.6617 4.9348 50 1 1.6037 -6.1129 3.9701 51 1 -0.4637 -7.9826 2.1379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480351825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:47 Heat of formation + Delta-G solvation = 65.603379 kcal Electronic energy + Delta-G solvation = -30668.456068 eV Core-core repulsion = 26798.398867 eV Total energy + Delta-G solvation = -3870.057201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.76510 -41.33036 -38.35954 -37.89940 -36.40824 -34.17182 -33.71422 -32.20025 -31.74591 -31.21779 -28.21915 -28.08749 -27.76328 -26.10575 -24.48419 -24.34534 -23.83514 -22.44523 -21.78496 -20.94794 -19.73144 -19.21126 -18.51458 -17.24499 -17.16580 -16.72746 -16.43737 -16.06596 -15.95083 -15.47117 -15.24622 -15.04477 -14.98025 -14.91800 -14.73245 -14.54805 -14.47020 -13.98142 -13.85098 -13.54906 -13.19003 -13.09910 -12.94904 -12.82443 -12.75503 -12.51800 -12.28072 -12.19340 -12.10213 -12.00273 -11.91258 -11.87879 -11.76876 -11.59380 -11.48465 -11.40947 -10.94000 -10.28505 -10.15809 -10.08896 -9.56569 -8.72676 -7.85154 -5.05731 0.28190 1.43367 1.46027 1.50233 1.55173 1.68248 1.87576 2.29630 2.60877 3.24544 3.46252 3.49479 3.68245 3.78641 3.84221 3.87217 3.98550 4.12220 4.21818 4.23490 4.27209 4.37142 4.42433 4.49881 4.53526 4.59632 4.70444 4.80906 4.81990 4.86756 4.92587 4.94127 4.99022 5.05242 5.06027 5.07570 5.07944 5.15972 5.20380 5.24812 5.25318 5.43852 5.45473 5.47960 5.50768 5.52171 5.69282 5.95714 6.36166 6.38245 6.93678 7.24514 7.42744 8.22003 8.44832 9.39918 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.004638 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.291449 B = 6035.142840 C = 8828.663775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.015 3.985 3 C -0.127 4.127 4 C -0.139 4.139 5 C 0.043 3.957 6 C -0.177 4.177 7 C -0.028 4.028 8 C 0.550 3.450 9 O -0.490 6.490 10 N -0.605 5.605 11 C 0.086 3.914 12 C -0.132 4.132 13 C -0.113 4.113 14 C -0.119 4.119 15 C 0.149 3.851 16 H 0.063 0.937 17 C 0.158 3.842 18 N -0.708 5.708 19 C -0.213 4.213 20 H 0.063 0.937 21 C -0.083 4.083 22 N -0.974 5.974 23 Si 0.966 3.034 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.298 1.298 27 N -0.369 5.369 28 H 0.456 0.544 29 N -0.275 5.275 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.366 0.634 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 22.240 6.001 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 C -0.184 4.184 4 C -0.197 4.197 5 C -0.115 4.115 6 C -0.206 4.206 7 C -0.157 4.157 8 C 0.334 3.666 9 O -0.361 6.361 10 N -0.341 5.341 11 C -0.036 4.036 12 C -0.170 4.170 13 C -0.150 4.150 14 C -0.158 4.158 15 C 0.046 3.954 16 H 0.081 0.919 17 C 0.032 3.968 18 N -0.349 5.349 19 C -0.346 4.346 20 H 0.081 0.919 21 C -0.274 4.274 22 N -0.627 5.627 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.226 1.226 27 N -0.093 5.093 28 H 0.310 0.690 29 N -0.107 5.107 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.158 0.842 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.198 0.802 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.536 22.544 6.043 24.237 hybrid contribution -0.570 -1.953 -0.701 2.152 sum 5.965 20.591 5.343 22.093 Atomic orbital electron populations 1.21860 0.92701 1.01877 1.02902 1.19053 0.95907 0.95374 0.88395 1.21714 1.00772 0.93238 1.02692 1.21885 1.00949 1.00195 0.96640 1.22211 1.02367 0.90644 0.96288 1.22019 1.05494 0.97376 0.95738 1.21814 1.09628 0.86837 0.97382 1.17595 0.79442 0.86617 0.82910 1.91279 1.46038 1.32158 1.66581 1.47935 1.69044 1.13050 1.04084 1.22353 1.00170 0.86404 0.94719 1.22017 0.97318 0.99507 0.98146 1.21496 1.02780 0.93426 0.97313 1.21897 0.96261 1.00697 0.96965 1.21440 0.98066 0.83153 0.92746 0.91866 1.20981 0.90553 0.92753 0.92519 1.42267 1.03982 1.36944 1.51675 1.19530 0.92511 1.05839 1.16722 0.91921 1.25377 0.95210 1.03308 1.03475 1.69830 0.97666 1.45754 1.49422 0.85147 0.77328 0.79323 0.78531 1.19524 1.21820 1.22616 1.44406 1.46637 1.01755 1.16508 0.68956 1.72998 1.17321 1.19963 1.00397 0.92715 0.89652 0.93618 0.93158 0.90349 0.92331 0.93458 0.89593 0.93041 0.84211 0.90216 0.89805 0.87156 0.91051 0.91252 0.89068 0.89707 0.91589 0.96170 0.96125 0.80229 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.46 71.98 0.61 -2.10 16 2 C 0.01 0.32 0.96 -52.93 -0.05 0.27 16 3 C -0.13 -2.24 8.04 71.98 0.58 -1.66 16 4 C -0.14 -2.91 8.20 71.98 0.59 -2.32 16 5 C 0.04 1.22 5.65 43.05 0.24 1.46 16 6 C -0.18 -6.10 10.21 22.66 0.23 -5.87 16 7 C -0.03 -0.93 6.52 40.79 0.27 -0.66 16 8 C 0.55 21.33 7.37 86.59 0.64 21.97 16 9 O -0.49 -24.84 11.14 -4.12 -0.05 -24.88 16 10 N -0.60 -18.51 2.97 -799.17 -2.38 -20.88 16 11 C 0.09 1.70 5.90 86.36 0.51 2.21 16 12 C -0.13 -1.68 6.04 30.67 0.19 -1.49 16 13 C -0.11 -1.65 5.88 30.62 0.18 -1.47 16 14 C -0.12 -2.65 5.30 30.68 0.16 -2.49 16 15 C 0.15 4.85 2.89 44.98 0.13 4.98 16 16 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 17 C 0.16 6.99 4.93 86.38 0.43 7.42 16 18 N -0.71 -39.50 3.37 -343.46 -1.16 -40.66 16 19 C -0.21 -13.11 9.86 84.03 0.83 -12.28 16 20 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 21 C -0.08 -5.17 5.50 84.86 0.47 -4.70 16 22 N -0.97 -64.22 13.06 21.65 0.28 -63.94 16 23 Si 0.97 50.26 29.55 68.60 2.03 52.29 16 24 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 26 H -0.30 -15.59 7.11 99.48 0.71 -14.89 16 27 N -0.37 -9.19 5.72 -48.00 -0.27 -9.47 16 28 H 0.46 8.15 6.35 -220.00 -1.40 6.75 16 29 N -0.27 -7.21 11.48 -47.49 -0.55 -7.75 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 36 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.14 5.35 7.79 -2.91 -0.02 5.33 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.53 3.49 -2.38 -0.01 1.52 16 42 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.02 1.00 6.04 -2.39 -0.01 0.98 16 49 H 0.02 0.90 8.03 -2.38 -0.02 0.88 16 50 H 0.37 22.00 7.52 -92.71 -0.70 21.30 16 51 H 0.25 15.64 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -80.64 393.48 2.75 -77.89 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -1.16 Total: 34.14 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.99 Total: 3.26 kcal Atomic # 7 Polarization: -138.63 SS G_CDS: -4.07 Total: -142.70 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.03 Total: 52.29 kcal Total: -80.64 2.75 -77.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480351825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.496 kcal (2) G-P(sol) polarization free energy of solvation -80.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds