Wall clock time and date at job start Tue Mar 31 2020 20:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 C 1.53002 * 109.47038 * 239.99698 * 2 1 3 5 5 C 1.50698 * 109.47228 * 119.99658 * 2 1 3 6 6 C 1.39678 * 126.06515 * 75.00052 * 5 2 1 7 7 C 1.38408 * 105.35783 * 180.02562 * 6 5 2 8 8 C 1.47162 * 126.88254 * 180.02562 * 7 6 5 9 9 O 1.21621 * 120.00555 * 29.09582 * 8 7 6 10 10 N 1.34789 * 119.99507 * 209.09693 * 8 7 6 11 11 C 1.46925 * 120.63002 * 10.01484 * 10 8 7 12 12 C 1.53191 * 108.76945 * 126.41505 * 11 10 8 13 13 C 1.53039 * 109.31816 * 54.63616 * 12 11 10 14 14 C 1.53043 * 109.53662 * 298.63364 * 13 12 11 15 15 C 1.46923 * 120.62692 * 190.03963 * 10 8 7 16 16 H 1.08997 * 109.58672 * 113.65537 * 15 10 8 17 17 C 1.53005 * 109.58968 * 353.37104 * 15 10 8 18 18 N 1.46504 * 109.46665 * 68.65297 * 17 15 10 19 19 C 1.36944 * 119.99473 * 172.81484 * 18 17 15 20 20 H 1.08001 * 120.00063 * 359.72477 * 19 18 17 21 21 C 1.38812 * 119.99348 * 179.71967 * 19 18 17 22 22 N 1.31618 * 119.99405 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00341 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47320 * 89.99649 * 23 21 19 25 25 H 1.48505 * 109.47078 * 209.99494 * 23 21 19 26 26 H 1.48498 * 109.47214 * 329.99570 * 23 21 19 27 27 N 1.36602 * 106.23018 * 0.25766 * 7 6 5 28 28 H 0.96998 * 125.18637 * 179.73886 * 27 7 6 29 29 N 1.28438 * 109.61779 * 359.55872 * 27 7 6 30 30 H 1.08996 * 109.47173 * 300.00149 * 1 2 3 31 31 H 1.08996 * 109.47017 * 60.00465 * 1 2 3 32 32 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47268 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47261 * 300.00209 * 3 2 1 35 35 H 1.08996 * 109.47211 * 59.99874 * 3 2 1 36 36 H 1.08989 * 109.47274 * 299.99951 * 4 2 1 37 37 H 1.09002 * 109.46678 * 60.00209 * 4 2 1 38 38 H 1.09000 * 109.46696 * 179.97438 * 4 2 1 39 39 H 1.07995 * 127.32101 * 0.05749 * 6 5 2 40 40 H 1.08993 * 109.58400 * 246.19952 * 11 10 8 41 41 H 1.09000 * 109.58922 * 6.48736 * 11 10 8 42 42 H 1.09005 * 109.49680 * 174.58533 * 12 11 10 43 43 H 1.08995 * 109.50071 * 294.67800 * 12 11 10 44 44 H 1.09008 * 109.45897 * 58.64610 * 13 12 11 45 45 H 1.08996 * 109.46416 * 178.62696 * 13 12 11 46 46 H 1.09002 * 109.49202 * 301.41426 * 14 13 12 47 47 H 1.08992 * 109.50219 * 181.31666 * 14 13 12 48 48 H 1.08996 * 109.46798 * 308.65278 * 17 15 10 49 49 H 1.08998 * 109.47450 * 188.64858 * 17 15 10 50 50 H 0.96998 * 120.00282 * 352.53290 * 18 17 15 51 51 H 0.97008 * 120.00037 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 2.0310 -2.0911 1.4410 7 6 2.5814 -2.2708 2.6981 8 6 2.8034 -3.5503 3.3905 9 8 3.0082 -4.5622 2.7476 10 7 2.7796 -3.6007 4.7372 11 6 2.3209 -2.4461 5.5216 12 6 1.2164 -2.9072 6.4777 13 6 1.7322 -4.0752 7.3214 14 6 2.0980 -5.2457 6.4057 15 6 3.2125 -4.8111 5.4487 16 1 4.1198 -4.5980 6.0138 17 6 3.4870 -5.9285 4.4401 18 7 4.6740 -5.5922 3.6499 19 6 5.2013 -6.5107 2.7819 20 1 4.7449 -7.4845 2.6831 21 6 6.3225 -6.1900 2.0289 22 7 6.8297 -7.0730 1.1950 23 14 7.1122 -4.5058 2.2002 24 1 8.1464 -4.5500 3.2650 25 1 7.7440 -4.1221 0.9122 26 1 6.0742 -3.5066 2.5595 27 7 2.8725 -1.0222 3.1695 28 1 3.2675 -0.8292 4.0341 29 7 2.5468 -0.1431 2.2916 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.6763 -2.8560 0.7661 40 1 3.1541 -2.0395 6.0947 41 1 1.9306 -1.6806 4.8510 42 1 0.9342 -2.0825 7.1322 43 1 0.3484 -3.2292 5.9026 44 1 2.6151 -3.7595 7.8774 45 1 0.9564 -4.3894 8.0196 46 1 1.2216 -5.5457 5.8312 47 1 2.4432 -6.0854 7.0088 48 1 2.6286 -6.0387 3.7775 49 1 3.6580 -6.8643 4.9721 50 1 5.0838 -4.7175 3.7386 51 1 7.6134 -6.8490 0.6690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480351826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:56 Heat of formation + Delta-G solvation = 83.772533 kcal Electronic energy + Delta-G solvation = -30965.921633 eV Core-core repulsion = 27096.652306 eV Total energy + Delta-G solvation = -3869.269328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57600 -40.15777 -37.16138 -36.99353 -34.72449 -32.99129 -32.13883 -30.96280 -30.40325 -30.20116 -27.35461 -27.30041 -26.56409 -24.71643 -23.28002 -22.91167 -22.27987 -21.16268 -20.64117 -19.95592 -18.67495 -17.86651 -17.09230 -16.05498 -15.92194 -15.56208 -14.98063 -14.91871 -14.52105 -14.43266 -14.20124 -13.98180 -13.94153 -13.75713 -13.54483 -13.20133 -13.14915 -12.64896 -12.53763 -12.40045 -12.35482 -12.19190 -11.92366 -11.70148 -11.37300 -11.30006 -11.20751 -11.11884 -11.06126 -10.95184 -10.81854 -10.76397 -10.47405 -10.33823 -10.06130 -9.44536 -9.04641 -8.98658 -8.96626 -8.57835 -8.37809 -6.90709 -5.61153 -2.88746 1.54777 2.63090 2.82081 3.02972 3.42689 3.46177 3.50845 3.54265 4.34617 4.50563 4.57219 4.70200 4.72668 4.73447 4.82378 4.92567 4.95018 5.13635 5.14887 5.19795 5.33329 5.40260 5.53063 5.54984 5.57463 5.62402 5.64707 5.70506 5.73887 5.75460 5.77337 5.81863 5.84190 5.89797 5.92599 5.94519 6.02220 6.05485 6.11420 6.27080 6.27305 6.31576 6.42905 6.59293 6.73503 7.00952 7.11067 7.57891 8.07652 8.14160 8.52324 8.58260 9.36849 10.10168 10.29823 11.58502 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.005238 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.266985 B = 5344.538319 C = 7633.793210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.018 3.982 3 C -0.134 4.134 4 C -0.141 4.141 5 C 0.041 3.959 6 C -0.162 4.162 7 C -0.014 4.014 8 C 0.546 3.454 9 O -0.426 6.426 10 N -0.617 5.617 11 C 0.097 3.903 12 C -0.130 4.130 13 C -0.118 4.118 14 C -0.127 4.127 15 C 0.140 3.860 16 H 0.071 0.929 17 C 0.159 3.841 18 N -0.727 5.727 19 C -0.214 4.214 20 H 0.088 0.912 21 C 0.000 4.000 22 N -0.940 5.940 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.284 1.284 27 N -0.388 5.388 28 H 0.441 0.559 29 N -0.280 5.280 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.160 0.840 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.029 0.971 50 H 0.354 0.646 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 16.277 7.938 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 C -0.191 4.191 4 C -0.199 4.199 5 C -0.118 4.118 6 C -0.191 4.191 7 C -0.142 4.142 8 C 0.330 3.670 9 O -0.291 6.291 10 N -0.355 5.355 11 C -0.027 4.027 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.037 3.963 16 H 0.089 0.911 17 C 0.032 3.968 18 N -0.371 5.371 19 C -0.344 4.344 20 H 0.106 0.894 21 C -0.194 4.194 22 N -0.590 5.590 23 Si 0.715 3.285 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.211 1.211 27 N -0.105 5.105 28 H 0.288 0.712 29 N -0.112 5.112 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.177 0.823 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.047 0.953 50 H 0.187 0.813 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.850 16.452 7.866 23.517 hybrid contribution 0.815 0.693 0.284 1.107 sum -14.035 17.145 8.150 23.608 Atomic orbital electron populations 1.21853 0.93480 1.02282 1.01758 1.18881 0.95237 0.94689 0.89592 1.21756 1.01350 0.94400 1.01598 1.21893 1.01654 1.00626 0.95703 1.21818 1.02937 0.91673 0.95353 1.21925 1.05459 0.96395 0.95290 1.22095 1.08066 0.86693 0.97374 1.17174 0.81079 0.86882 0.81915 1.91221 1.41083 1.31562 1.65217 1.47838 1.67524 1.15396 1.04790 1.21869 0.97297 0.88826 0.94724 1.21861 0.98204 0.98802 0.98013 1.21507 1.01053 0.95357 0.97629 1.21903 0.99164 0.98009 0.97514 1.21637 0.95937 0.84955 0.93732 0.91064 1.20979 0.92175 0.92668 0.90928 1.42661 1.30505 1.14998 1.48948 1.19016 1.06663 0.95148 1.13610 0.89384 1.24552 0.98832 0.96915 0.99130 1.69692 1.25445 1.34090 1.29748 0.86555 0.78977 0.86125 0.76869 1.21643 1.21976 1.21095 1.44002 1.47096 1.03111 1.16333 0.71231 1.72986 1.17522 1.20203 1.00534 0.92657 0.92058 0.92198 0.92538 0.92596 0.92161 0.91887 0.92023 0.92283 0.82289 0.91636 0.90348 0.90981 0.91303 0.91815 0.91661 0.91182 0.90458 0.92941 0.95341 0.81329 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.46 37.16 0.31 -0.96 16 2 C 0.02 0.20 0.96 -155.66 -0.15 0.05 16 3 C -0.13 -1.37 8.04 37.16 0.30 -1.07 16 4 C -0.14 -1.54 8.20 37.16 0.30 -1.24 16 5 C 0.04 0.58 5.65 -82.47 -0.47 0.12 16 6 C -0.16 -2.56 10.24 -38.98 -0.40 -2.96 16 7 C -0.01 -0.22 6.24 -82.06 -0.51 -0.74 16 8 C 0.55 9.90 6.84 -12.63 -0.09 9.82 16 9 O -0.43 -9.73 11.07 5.26 0.06 -9.68 16 10 N -0.62 -8.98 2.97 -166.58 -0.50 -9.48 16 11 C 0.10 0.99 5.29 -3.71 -0.02 0.97 16 12 C -0.13 -1.12 6.08 -26.61 -0.16 -1.29 16 13 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 14 C -0.13 -1.45 5.37 -26.61 -0.14 -1.59 16 15 C 0.14 2.12 2.94 -67.60 -0.20 1.92 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 17 C 0.16 3.23 4.87 -4.04 -0.02 3.21 16 18 N -0.73 -18.25 3.09 -59.90 -0.19 -18.44 16 19 C -0.21 -6.40 10.32 -15.06 -0.16 -6.56 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 22 N -0.94 -31.04 13.97 55.49 0.78 -30.26 16 23 Si 0.88 23.97 27.74 -169.99 -4.71 19.26 16 24 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.29 -8.09 7.11 56.52 0.40 -7.68 16 26 H -0.28 -7.51 6.52 56.52 0.37 -7.14 16 27 N -0.39 -5.29 5.59 33.48 0.19 -5.10 16 28 H 0.44 4.79 7.10 -190.46 -1.35 3.44 16 29 N -0.28 -3.98 11.48 33.64 0.39 -3.59 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.06 0.70 7.60 -51.94 -0.39 0.31 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.16 2.47 7.79 -52.49 -0.41 2.06 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.77 4.85 -51.93 -0.25 0.52 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.05 1.16 6.23 -51.93 -0.32 0.84 16 49 H 0.03 0.58 8.13 -51.93 -0.42 0.15 16 50 H 0.35 8.91 4.79 -40.82 -0.20 8.71 16 51 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -36.24 390.58 -9.45 -45.69 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -9.70 Total: 7.34 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.65 Total: -1.63 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: 0.67 Total: -66.87 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.06 Total: -9.68 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.71 Total: 19.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.24 -9.45 -45.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480351826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.459 kcal (2) G-P(sol) polarization free energy of solvation -36.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds