Wall clock time and date at job start Tue Mar 31 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 C 1.53002 * 109.47038 * 239.99698 * 2 1 3 5 5 C 1.50698 * 109.47228 * 119.99658 * 2 1 3 6 6 C 1.39678 * 126.06515 * 75.00052 * 5 2 1 7 7 C 1.38408 * 105.35783 * 180.02562 * 6 5 2 8 8 C 1.47162 * 126.88254 * 180.02562 * 7 6 5 9 9 O 1.21621 * 120.00555 * 29.09582 * 8 7 6 10 10 N 1.34789 * 119.99507 * 209.09693 * 8 7 6 11 11 C 1.46925 * 120.63002 * 10.01484 * 10 8 7 12 12 C 1.53191 * 108.76945 * 126.41505 * 11 10 8 13 13 C 1.53039 * 109.31816 * 54.63616 * 12 11 10 14 14 C 1.53043 * 109.53662 * 298.63364 * 13 12 11 15 15 C 1.46923 * 120.62692 * 190.03963 * 10 8 7 16 16 H 1.08997 * 109.58672 * 113.65537 * 15 10 8 17 17 C 1.53005 * 109.58968 * 353.37104 * 15 10 8 18 18 N 1.46504 * 109.46665 * 68.65297 * 17 15 10 19 19 C 1.36944 * 119.99473 * 172.81484 * 18 17 15 20 20 H 1.08001 * 120.00063 * 359.72477 * 19 18 17 21 21 C 1.38812 * 119.99348 * 179.71967 * 19 18 17 22 22 N 1.31618 * 119.99405 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00341 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47320 * 89.99649 * 23 21 19 25 25 H 1.48505 * 109.47078 * 209.99494 * 23 21 19 26 26 H 1.48498 * 109.47214 * 329.99570 * 23 21 19 27 27 N 1.36602 * 106.23018 * 0.25766 * 7 6 5 28 28 H 0.96998 * 125.18637 * 179.73886 * 27 7 6 29 29 N 1.28438 * 109.61779 * 359.55872 * 27 7 6 30 30 H 1.08996 * 109.47173 * 300.00149 * 1 2 3 31 31 H 1.08996 * 109.47017 * 60.00465 * 1 2 3 32 32 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47268 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47261 * 300.00209 * 3 2 1 35 35 H 1.08996 * 109.47211 * 59.99874 * 3 2 1 36 36 H 1.08989 * 109.47274 * 299.99951 * 4 2 1 37 37 H 1.09002 * 109.46678 * 60.00209 * 4 2 1 38 38 H 1.09000 * 109.46696 * 179.97438 * 4 2 1 39 39 H 1.07995 * 127.32101 * 0.05749 * 6 5 2 40 40 H 1.08993 * 109.58400 * 246.19952 * 11 10 8 41 41 H 1.09000 * 109.58922 * 6.48736 * 11 10 8 42 42 H 1.09005 * 109.49680 * 174.58533 * 12 11 10 43 43 H 1.08995 * 109.50071 * 294.67800 * 12 11 10 44 44 H 1.09008 * 109.45897 * 58.64610 * 13 12 11 45 45 H 1.08996 * 109.46416 * 178.62696 * 13 12 11 46 46 H 1.09002 * 109.49202 * 301.41426 * 14 13 12 47 47 H 1.08992 * 109.50219 * 181.31666 * 14 13 12 48 48 H 1.08996 * 109.46798 * 308.65278 * 17 15 10 49 49 H 1.08998 * 109.47450 * 188.64858 * 17 15 10 50 50 H 0.96998 * 120.00282 * 352.53290 * 18 17 15 51 51 H 0.97008 * 120.00037 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 2.0310 -2.0911 1.4410 7 6 2.5814 -2.2708 2.6981 8 6 2.8034 -3.5503 3.3905 9 8 3.0082 -4.5622 2.7476 10 7 2.7796 -3.6007 4.7372 11 6 2.3209 -2.4461 5.5216 12 6 1.2164 -2.9072 6.4777 13 6 1.7322 -4.0752 7.3214 14 6 2.0980 -5.2457 6.4057 15 6 3.2125 -4.8111 5.4487 16 1 4.1198 -4.5980 6.0138 17 6 3.4870 -5.9285 4.4401 18 7 4.6740 -5.5922 3.6499 19 6 5.2013 -6.5107 2.7819 20 1 4.7449 -7.4845 2.6831 21 6 6.3225 -6.1900 2.0289 22 7 6.8297 -7.0730 1.1950 23 14 7.1122 -4.5058 2.2002 24 1 8.1464 -4.5500 3.2650 25 1 7.7440 -4.1221 0.9122 26 1 6.0742 -3.5066 2.5595 27 7 2.8725 -1.0222 3.1695 28 1 3.2675 -0.8292 4.0341 29 7 2.5468 -0.1431 2.2916 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.6763 -2.8560 0.7661 40 1 3.1541 -2.0395 6.0947 41 1 1.9306 -1.6806 4.8510 42 1 0.9342 -2.0825 7.1322 43 1 0.3484 -3.2292 5.9026 44 1 2.6151 -3.7595 7.8774 45 1 0.9564 -4.3894 8.0196 46 1 1.2216 -5.5457 5.8312 47 1 2.4432 -6.0854 7.0088 48 1 2.6286 -6.0387 3.7775 49 1 3.6580 -6.8643 4.9721 50 1 5.0838 -4.7175 3.7386 51 1 7.6134 -6.8490 0.6690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480351826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:54 Heat of formation + Delta-G solvation = 59.643629 kcal Electronic energy + Delta-G solvation = -30966.967941 eV Core-core repulsion = 27096.652306 eV Total energy + Delta-G solvation = -3870.315636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.73761 -41.43496 -38.35862 -37.90624 -36.56492 -34.18811 -33.83089 -32.19319 -32.05524 -31.36256 -28.28745 -28.08650 -27.91461 -26.09594 -24.39317 -24.22097 -23.73396 -22.59419 -21.76288 -21.03665 -19.99213 -19.45178 -18.54644 -17.23752 -17.13161 -16.80061 -16.59865 -16.03818 -15.93568 -15.72651 -15.37235 -15.19023 -15.00373 -14.82465 -14.65764 -14.64658 -14.40856 -14.19899 -13.89893 -13.80230 -13.46200 -13.11776 -12.98254 -12.94871 -12.79936 -12.53414 -12.34428 -12.28787 -12.11400 -12.02403 -11.92851 -11.89113 -11.80392 -11.58625 -11.50114 -11.44722 -11.04690 -10.34487 -10.14574 -10.10855 -9.67148 -9.01329 -8.00306 -5.24305 0.28094 1.22648 1.29610 1.34670 1.47932 1.66609 1.85471 2.23909 2.45243 3.26745 3.32215 3.46197 3.59774 3.72750 3.81241 3.87941 3.99360 4.10630 4.20015 4.22024 4.23177 4.27748 4.35923 4.45633 4.48995 4.56170 4.66993 4.81024 4.81151 4.84585 4.88317 4.93054 4.97528 5.03934 5.05553 5.06204 5.10412 5.13963 5.20698 5.23603 5.27296 5.44505 5.46120 5.47695 5.47945 5.65382 5.76756 5.95753 6.22972 6.33505 6.92695 7.10808 7.18812 7.89430 8.07042 9.23187 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.005238 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.266985 B = 5344.538319 C = 7633.793210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.015 3.985 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.041 3.959 6 C -0.178 4.178 7 C -0.031 4.031 8 C 0.550 3.450 9 O -0.492 6.492 10 N -0.609 5.609 11 C 0.088 3.912 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.121 4.121 15 C 0.145 3.855 16 H 0.082 0.918 17 C 0.158 3.842 18 N -0.727 5.727 19 C -0.199 4.199 20 H 0.051 0.949 21 C -0.069 4.069 22 N -0.990 5.990 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.300 1.300 26 H -0.275 1.275 27 N -0.371 5.371 28 H 0.454 0.546 29 N -0.277 5.277 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.151 0.849 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.031 0.969 49 H 0.027 0.973 50 H 0.356 0.644 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 19.998 10.363 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 C -0.186 4.186 4 C -0.199 4.199 5 C -0.117 4.117 6 C -0.207 4.207 7 C -0.160 4.160 8 C 0.334 3.666 9 O -0.362 6.362 10 N -0.346 5.346 11 C -0.034 4.034 12 C -0.164 4.164 13 C -0.149 4.149 14 C -0.160 4.160 15 C 0.043 3.957 16 H 0.100 0.900 17 C 0.032 3.968 18 N -0.371 5.371 19 C -0.331 4.331 20 H 0.069 0.931 21 C -0.259 4.259 22 N -0.643 5.643 23 Si 0.784 3.216 24 H -0.199 1.199 25 H -0.227 1.227 26 H -0.201 1.201 27 N -0.091 5.091 28 H 0.303 0.697 29 N -0.109 5.109 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.169 0.831 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.048 0.952 49 H 0.045 0.955 50 H 0.188 0.812 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.097 20.232 10.402 27.869 hybrid contribution 1.020 -0.473 -0.447 1.209 sum -15.077 19.760 9.955 26.775 Atomic orbital electron populations 1.21824 0.91879 1.02279 1.02913 1.19060 0.96484 0.94995 0.88189 1.21727 1.00434 0.93710 1.02762 1.21904 1.00522 1.00571 0.96859 1.22262 1.02304 0.90977 0.96200 1.22070 1.05860 0.97373 0.95371 1.21874 1.09392 0.86944 0.97771 1.17528 0.79407 0.86722 0.82901 1.91207 1.44780 1.33551 1.66686 1.47972 1.66045 1.16557 1.04023 1.22257 0.99009 0.87226 0.94874 1.21865 0.96886 0.99812 0.97820 1.21503 1.02299 0.93922 0.97196 1.21878 0.97139 0.99849 0.97102 1.21563 0.98036 0.83542 0.92598 0.90020 1.21030 0.89607 0.95041 0.91098 1.42568 1.31818 1.14024 1.48647 1.18987 1.05907 0.94564 1.13602 0.93117 1.25290 1.00056 1.01053 0.99538 1.69874 1.26405 1.36458 1.31578 0.85404 0.78151 0.81306 0.76738 1.19903 1.22714 1.20118 1.43994 1.46409 1.01940 1.16731 0.69668 1.72996 1.17273 1.19997 1.00648 0.92574 0.89813 0.92822 0.93905 0.90291 0.92162 0.92800 0.89497 0.94026 0.83138 0.88809 0.89978 0.87793 0.92474 0.90443 0.89653 0.92283 0.89393 0.95173 0.95496 0.81189 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.46 71.98 0.61 -1.58 16 2 C 0.01 0.30 0.96 -52.93 -0.05 0.25 16 3 C -0.13 -2.35 8.04 71.98 0.58 -1.77 16 4 C -0.14 -2.95 8.20 71.98 0.59 -2.36 16 5 C 0.04 1.12 5.65 43.05 0.24 1.36 16 6 C -0.18 -5.68 10.24 22.66 0.23 -5.45 16 7 C -0.03 -0.99 6.24 40.79 0.25 -0.73 16 8 C 0.55 19.99 6.84 86.58 0.59 20.59 16 9 O -0.49 -23.44 11.07 -4.10 -0.05 -23.49 16 10 N -0.61 -16.82 2.97 -799.17 -2.38 -19.20 16 11 C 0.09 1.49 5.29 86.36 0.46 1.95 16 12 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 13 C -0.11 -1.50 5.88 30.62 0.18 -1.32 16 14 C -0.12 -2.50 5.37 30.67 0.16 -2.33 16 15 C 0.15 4.20 2.94 44.98 0.13 4.34 16 16 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 17 C 0.16 6.58 4.87 86.38 0.42 7.00 16 18 N -0.73 -37.36 3.09 -343.44 -1.06 -38.43 16 19 C -0.20 -12.44 10.32 84.03 0.87 -11.57 16 20 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 21 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 22 N -0.99 -68.12 13.97 21.65 0.30 -67.82 16 23 Si 0.95 50.84 27.74 68.60 1.90 52.75 16 24 H -0.27 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 26 H -0.28 -14.01 6.52 99.48 0.65 -13.37 16 27 N -0.37 -9.42 5.59 -47.99 -0.27 -9.68 16 28 H 0.45 8.55 7.10 -220.01 -1.56 6.99 16 29 N -0.28 -7.35 11.48 -47.49 -0.55 -7.89 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.05 1.21 7.60 -2.39 -0.02 1.19 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.15 4.95 7.79 -2.91 -0.02 4.93 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.36 4.85 -2.39 -0.01 1.35 16 42 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.03 1.42 6.23 -2.39 -0.01 1.40 16 49 H 0.03 1.12 8.13 -2.39 -0.02 1.10 16 50 H 0.36 17.86 4.79 -92.71 -0.44 17.42 16 51 H 0.25 16.64 8.31 -92.70 -0.77 15.87 16 Total: -1.00 -83.75 390.58 2.70 -81.05 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -1.14 Total: 29.79 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.92 Total: 2.92 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -3.95 Total: -143.02 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.90 Total: 52.75 kcal Total: -83.75 2.70 -81.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480351826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.694 kcal (2) G-P(sol) polarization free energy of solvation -83.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds