Wall clock time and date at job start Tue Mar 31 2020 18:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46940 * 2 1 4 4 C 1.34670 * 126.59487 * 274.96362 * 3 2 1 5 5 N 1.34124 * 108.02158 * 179.81511 * 4 3 2 6 6 C 1.30509 * 109.25355 * 0.36403 * 5 4 3 7 7 C 1.50700 * 125.64501 * 179.89795 * 6 5 4 8 8 C 1.50705 * 109.47108 * 304.68834 * 7 6 5 9 9 O 1.21284 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00024 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99952 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47051 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46993 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46913 * 185.06931 * 13 12 11 15 15 H 1.08999 * 109.87398 * 53.63025 * 14 13 12 16 16 C 1.54323 * 109.88016 * 292.46068 * 14 13 12 17 17 C 1.55163 * 102.94111 * 218.39374 * 16 14 13 18 18 C 1.54903 * 101.58143 * 35.50028 * 17 16 14 19 19 N 1.47023 * 109.88172 * 174.65172 * 14 13 12 20 20 C 1.36933 * 125.64608 * 298.32015 * 19 14 13 21 21 H 1.07997 * 120.00556 * 345.74315 * 20 19 14 22 22 C 1.38815 * 119.99763 * 165.74400 * 20 19 14 23 23 N 1.31618 * 120.00048 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47313 * 90.00181 * 24 22 20 26 26 H 1.48505 * 109.46992 * 209.99916 * 24 22 20 27 27 H 1.48502 * 109.46960 * 329.99632 * 24 22 20 28 28 N 1.35040 * 108.70044 * 359.63421 * 6 5 4 29 29 H 0.97003 * 126.39739 * 180.20559 * 28 6 5 30 30 H 1.09007 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47512 * 299.99411 * 1 2 3 32 32 H 1.09002 * 109.47164 * 60.00158 * 1 2 3 33 33 H 1.09004 * 109.46828 * 240.00656 * 2 1 3 34 34 H 1.08996 * 109.47444 * 120.00486 * 2 1 3 35 35 H 1.07999 * 125.98825 * 0.06187 * 4 3 2 36 36 H 1.09004 * 109.47155 * 184.69601 * 7 6 5 37 37 H 1.08992 * 109.47553 * 64.69257 * 7 6 5 38 38 H 0.97001 * 119.99944 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47654 * 59.99649 * 11 10 8 40 40 H 1.09004 * 109.46586 * 299.99329 * 11 10 8 41 41 H 1.08993 * 109.46887 * 299.99961 * 12 11 10 42 42 H 1.09006 * 109.47040 * 59.99555 * 12 11 10 43 43 H 1.08998 * 109.46917 * 305.06234 * 13 12 11 44 44 H 1.08997 * 109.47140 * 65.06771 * 13 12 11 45 45 H 1.09004 * 110.72163 * 336.75143 * 16 14 13 46 46 H 1.08998 * 110.72207 * 100.02769 * 16 14 13 47 47 H 1.08999 * 110.99885 * 277.42656 * 17 16 14 48 48 H 1.08998 * 111.03546 * 153.59509 * 17 16 14 49 49 H 1.09001 * 110.36918 * 204.15635 * 18 17 16 50 50 H 1.09001 * 110.37020 * 81.83066 * 18 17 16 51 51 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2117 2.2090 -1.0772 5 7 2.6664 3.3967 -0.6512 6 6 2.7830 3.3719 0.6484 7 6 3.2651 4.5114 1.5088 8 6 4.6205 4.9639 1.0299 9 8 5.1433 4.4154 0.0829 10 7 5.2517 5.9781 1.6540 11 6 6.5691 6.4183 1.1881 12 6 7.0586 7.5751 2.0617 13 6 8.4347 8.0344 1.5756 14 6 8.9797 9.1041 2.5241 15 1 8.9658 8.7327 3.5487 16 6 8.1268 10.3857 2.4154 17 6 9.1839 11.5166 2.5211 18 6 10.3872 10.8882 1.7751 19 7 10.3534 9.4601 2.1397 20 6 11.4242 8.6067 2.1239 21 1 11.3596 7.6498 2.6203 22 6 12.5929 8.9716 1.4696 23 7 12.6715 10.1376 0.8641 24 14 14.0533 7.8072 1.4473 25 1 13.9603 6.9191 0.2607 26 1 15.3118 8.5928 1.3801 27 1 14.0490 6.9841 2.6833 28 7 2.3946 2.1581 1.0949 29 1 2.3760 1.8636 2.0190 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0190 1.9342 -2.1037 36 1 3.3380 4.1792 2.5444 37 1 2.5607 5.3405 1.4420 38 1 4.8334 6.4170 2.4112 39 1 6.4959 6.7511 0.1528 40 1 7.2735 5.5891 1.2544 41 1 6.3540 8.4040 1.9952 42 1 7.1317 7.2427 3.0973 43 1 9.1161 7.1839 1.5573 44 1 8.3453 8.4501 0.5719 45 1 7.6130 10.4267 1.4549 46 1 7.4143 10.4456 3.2381 47 1 9.4335 11.7219 3.5621 48 1 8.8411 12.4207 2.0180 49 1 11.3200 11.3429 2.1089 50 1 10.2702 11.0075 0.6980 51 1 13.4882 10.3927 0.4072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480826979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:30 Heat of formation + Delta-G solvation = 21.309203 kcal Electronic energy + Delta-G solvation = -27704.092507 eV Core-core repulsion = 23832.114566 eV Total energy + Delta-G solvation = -3871.977941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -42.38090 -39.58309 -37.80842 -35.48748 -34.54272 -33.03436 -32.69158 -32.20843 -31.40456 -29.36321 -28.24387 -27.09232 -24.79064 -24.04059 -23.60752 -21.59602 -21.39575 -21.12998 -20.20508 -20.01478 -19.11272 -17.72129 -17.18160 -16.70155 -15.89296 -15.84243 -15.28651 -15.09218 -14.86732 -14.78928 -14.30592 -14.21680 -13.87298 -13.83336 -13.59655 -13.24140 -12.98707 -12.74373 -12.51679 -12.20922 -12.02123 -12.00100 -11.88476 -11.64720 -11.63408 -11.41117 -10.98442 -10.79955 -10.68870 -10.52115 -10.20052 -10.07534 -10.04719 -9.96930 -9.90665 -9.73115 -9.58267 -9.56449 -9.05398 -8.53642 -8.46732 -6.72543 -5.70034 -3.04821 1.70749 2.57430 2.63900 2.92108 3.31736 3.42431 3.47785 3.48964 4.01665 4.38979 4.51509 4.52679 4.60050 4.73156 4.83135 4.98026 5.07606 5.11473 5.16484 5.23079 5.31077 5.39625 5.41926 5.48713 5.52106 5.64076 5.65593 5.70128 5.77756 5.89961 6.00405 6.01761 6.09336 6.16205 6.31035 6.38523 6.44454 6.47461 6.53678 6.60748 6.74573 6.76635 7.00305 7.06229 7.21690 7.44454 7.59502 7.67921 7.84976 7.92295 8.19914 8.34384 9.25344 9.87026 10.56409 11.42333 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.001751 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.243041 B =15987.937764 C =17053.703856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.024 4.024 4 C -0.020 4.020 5 N -0.457 5.457 6 C 0.218 3.782 7 C -0.054 4.054 8 C 0.512 3.488 9 O -0.513 6.513 10 N -0.731 5.731 11 C 0.120 3.880 12 C -0.126 4.126 13 C -0.123 4.123 14 C 0.162 3.838 15 H 0.030 0.970 16 C -0.124 4.124 17 C -0.150 4.150 18 C 0.172 3.828 19 N -0.597 5.597 20 C -0.226 4.226 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.563 5.563 29 H 0.415 0.585 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.168 0.832 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.398 0.602 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.023 0.977 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.118 -13.935 4.841 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.169 4.169 5 N -0.175 5.175 6 C -0.046 4.046 7 C -0.096 4.096 8 C 0.296 3.704 9 O -0.387 6.387 10 N -0.384 5.384 11 C -0.003 4.003 12 C -0.164 4.164 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.048 0.952 16 C -0.162 4.162 17 C -0.189 4.189 18 C 0.048 3.952 19 N -0.321 5.321 20 C -0.354 4.354 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 N -0.167 5.167 29 H 0.252 0.748 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.185 0.815 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.041 0.959 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.285 -13.641 3.487 28.941 hybrid contribution 0.438 -1.240 1.196 1.778 sum -24.847 -14.882 4.683 29.339 Atomic orbital electron populations 1.21778 0.94429 1.01903 1.02400 1.19983 0.95993 0.89099 1.03466 1.21229 1.09098 0.96375 0.87278 1.22122 1.05751 0.90382 0.98647 1.70249 1.16334 1.23139 1.07786 1.22215 1.04382 0.86852 0.91182 1.19928 0.96177 0.95489 0.98009 1.20092 0.86479 0.80373 0.83493 1.90798 1.66532 1.54829 1.26565 1.46033 1.20979 1.36063 1.35283 1.21492 0.82548 0.97392 0.98903 1.21826 0.98875 0.96617 0.99130 1.22035 0.93358 1.00507 1.00393 1.20927 0.86036 0.92243 0.95303 0.95213 1.22590 0.97118 0.96168 1.00322 1.23011 0.98421 0.96898 1.00578 1.21409 0.94619 0.83689 0.95524 1.44546 1.02302 1.06407 1.78822 1.18957 0.90592 0.98472 1.27423 0.90841 1.24890 0.98753 0.97471 0.99133 1.69937 1.27011 1.20324 1.39209 0.86185 0.82203 0.80018 0.77757 1.21533 1.21734 1.20702 1.43066 1.51600 1.12437 1.09604 0.74759 0.92044 0.92951 0.92007 0.89373 0.91323 0.81502 0.87630 0.86306 0.76798 0.91423 0.91523 0.91705 0.91834 0.91652 0.92222 0.92018 0.92676 0.92537 0.92573 0.91258 0.95862 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.05 -0.25 6.49 -27.88 -0.18 -0.43 16 3 C -0.02 -0.21 6.49 -81.60 -0.53 -0.74 16 4 C -0.02 -0.23 11.79 -17.81 -0.21 -0.44 16 5 N -0.46 -6.43 10.60 -10.82 -0.11 -6.54 16 6 C 0.22 2.37 6.95 -155.41 -1.08 1.29 16 7 C -0.05 -0.42 6.33 -29.03 -0.18 -0.61 16 8 C 0.51 6.23 7.82 -10.98 -0.09 6.14 16 9 O -0.51 -9.04 15.56 5.55 0.09 -8.95 16 10 N -0.73 -7.53 5.56 -60.29 -0.33 -7.86 16 11 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 12 C -0.13 -1.62 5.10 -26.73 -0.14 -1.75 16 13 C -0.12 -2.18 4.72 -26.73 -0.13 -2.31 16 14 C 0.16 3.23 3.16 -66.95 -0.21 3.02 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.12 -2.10 5.72 -24.89 -0.14 -2.25 16 17 C -0.15 -2.84 7.09 -24.58 -0.17 -3.01 16 18 C 0.17 4.20 5.42 -2.53 -0.01 4.19 16 19 N -0.60 -15.04 3.13 -162.57 -0.51 -15.55 16 20 C -0.23 -6.25 9.71 -15.06 -0.15 -6.40 16 21 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 23 N -0.92 -27.14 10.56 55.49 0.59 -26.55 16 24 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 N -0.56 -4.57 6.15 -6.54 -0.04 -4.61 16 29 H 0.41 1.89 8.96 -40.82 -0.37 1.52 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 2.67 8.47 -40.82 -0.35 2.33 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.75 7.65 -51.93 -0.40 0.35 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.29 7.84 -51.93 -0.41 0.89 16 44 H 0.06 1.14 8.01 -51.93 -0.42 0.72 16 45 H 0.06 1.01 7.76 -51.93 -0.40 0.60 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 50 H 0.02 0.62 8.07 -51.93 -0.42 0.20 16 51 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 412.10 15.07 6.21 6.21 Total: -1.00 -37.05 412.10 -11.11 -48.16 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -9.00 Total: 0.70 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.97 Total: -2.31 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.41 Total: -61.11 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.05 -11.11 -48.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480826979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.473 kcal (2) G-P(sol) polarization free energy of solvation -37.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds