Wall clock time and date at job start Tue Mar 31 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46940 * 2 1 4 4 C 1.34670 * 126.59487 * 274.96362 * 3 2 1 5 5 N 1.34124 * 108.02158 * 179.81511 * 4 3 2 6 6 C 1.30509 * 109.25355 * 0.36403 * 5 4 3 7 7 C 1.50700 * 125.64501 * 179.89795 * 6 5 4 8 8 C 1.50705 * 109.47108 * 304.68834 * 7 6 5 9 9 O 1.21284 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00024 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99952 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47051 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46993 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46913 * 185.06931 * 13 12 11 15 15 H 1.08999 * 109.87398 * 53.63025 * 14 13 12 16 16 C 1.54323 * 109.88016 * 292.46068 * 14 13 12 17 17 C 1.55163 * 102.94111 * 218.39374 * 16 14 13 18 18 C 1.54903 * 101.58143 * 35.50028 * 17 16 14 19 19 N 1.47023 * 109.88172 * 174.65172 * 14 13 12 20 20 C 1.36933 * 125.64608 * 298.32015 * 19 14 13 21 21 H 1.07997 * 120.00556 * 345.74315 * 20 19 14 22 22 C 1.38815 * 119.99763 * 165.74400 * 20 19 14 23 23 N 1.31618 * 120.00048 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47313 * 90.00181 * 24 22 20 26 26 H 1.48505 * 109.46992 * 209.99916 * 24 22 20 27 27 H 1.48502 * 109.46960 * 329.99632 * 24 22 20 28 28 N 1.35040 * 108.70044 * 359.63421 * 6 5 4 29 29 H 0.97003 * 126.39739 * 180.20559 * 28 6 5 30 30 H 1.09007 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47512 * 299.99411 * 1 2 3 32 32 H 1.09002 * 109.47164 * 60.00158 * 1 2 3 33 33 H 1.09004 * 109.46828 * 240.00656 * 2 1 3 34 34 H 1.08996 * 109.47444 * 120.00486 * 2 1 3 35 35 H 1.07999 * 125.98825 * 0.06187 * 4 3 2 36 36 H 1.09004 * 109.47155 * 184.69601 * 7 6 5 37 37 H 1.08992 * 109.47553 * 64.69257 * 7 6 5 38 38 H 0.97001 * 119.99944 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47654 * 59.99649 * 11 10 8 40 40 H 1.09004 * 109.46586 * 299.99329 * 11 10 8 41 41 H 1.08993 * 109.46887 * 299.99961 * 12 11 10 42 42 H 1.09006 * 109.47040 * 59.99555 * 12 11 10 43 43 H 1.08998 * 109.46917 * 305.06234 * 13 12 11 44 44 H 1.08997 * 109.47140 * 65.06771 * 13 12 11 45 45 H 1.09004 * 110.72163 * 336.75143 * 16 14 13 46 46 H 1.08998 * 110.72207 * 100.02769 * 16 14 13 47 47 H 1.08999 * 110.99885 * 277.42656 * 17 16 14 48 48 H 1.08998 * 111.03546 * 153.59509 * 17 16 14 49 49 H 1.09001 * 110.36918 * 204.15635 * 18 17 16 50 50 H 1.09001 * 110.37020 * 81.83066 * 18 17 16 51 51 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2117 2.2090 -1.0772 5 7 2.6664 3.3967 -0.6512 6 6 2.7830 3.3719 0.6484 7 6 3.2651 4.5114 1.5088 8 6 4.6205 4.9639 1.0299 9 8 5.1433 4.4154 0.0829 10 7 5.2517 5.9781 1.6540 11 6 6.5691 6.4183 1.1881 12 6 7.0586 7.5751 2.0617 13 6 8.4347 8.0344 1.5756 14 6 8.9797 9.1041 2.5241 15 1 8.9658 8.7327 3.5487 16 6 8.1268 10.3857 2.4154 17 6 9.1839 11.5166 2.5211 18 6 10.3872 10.8882 1.7751 19 7 10.3534 9.4601 2.1397 20 6 11.4242 8.6067 2.1239 21 1 11.3596 7.6498 2.6203 22 6 12.5929 8.9716 1.4696 23 7 12.6715 10.1376 0.8641 24 14 14.0533 7.8072 1.4473 25 1 13.9603 6.9191 0.2607 26 1 15.3118 8.5928 1.3801 27 1 14.0490 6.9841 2.6833 28 7 2.3946 2.1581 1.0949 29 1 2.3760 1.8636 2.0190 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0190 1.9342 -2.1037 36 1 3.3380 4.1792 2.5444 37 1 2.5607 5.3405 1.4420 38 1 4.8334 6.4170 2.4112 39 1 6.4959 6.7511 0.1528 40 1 7.2735 5.5891 1.2544 41 1 6.3540 8.4040 1.9952 42 1 7.1317 7.2427 3.0973 43 1 9.1161 7.1839 1.5573 44 1 8.3453 8.4501 0.5719 45 1 7.6130 10.4267 1.4549 46 1 7.4143 10.4456 3.2381 47 1 9.4335 11.7219 3.5621 48 1 8.8411 12.4207 2.0180 49 1 11.3200 11.3429 2.1089 50 1 10.2702 11.0075 0.6980 51 1 13.4882 10.3927 0.4072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480826979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:23 Heat of formation + Delta-G solvation = -4.382233 kcal Electronic energy + Delta-G solvation = -27705.206571 eV Core-core repulsion = 23832.114566 eV Total energy + Delta-G solvation = -3873.092005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -43.09476 -40.57114 -39.44253 -36.65509 -35.08634 -34.67999 -33.78234 -33.38561 -32.17186 -31.21744 -29.52733 -27.92265 -26.59638 -25.48439 -24.23493 -22.75659 -22.31193 -21.85288 -21.83825 -21.04603 -20.62154 -18.71809 -18.38707 -18.01590 -17.00162 -16.88474 -16.74521 -16.11761 -16.00012 -15.77801 -15.58379 -15.34072 -15.03455 -14.63161 -14.46630 -14.30768 -14.02623 -13.87063 -13.68547 -13.54516 -13.28000 -13.20594 -12.96611 -12.95401 -12.74636 -12.64640 -12.44375 -12.21828 -12.02830 -11.99368 -11.80064 -11.66234 -11.52674 -11.30035 -11.14962 -10.97085 -10.92615 -10.78559 -10.65290 -10.06182 -9.18575 -8.76728 -7.85041 -5.20364 1.01207 1.43191 1.45417 1.53157 1.69336 1.90799 2.18710 2.48137 2.51922 3.33503 3.35570 3.71632 3.89508 3.95503 4.02092 4.04473 4.07282 4.16172 4.20101 4.28461 4.37392 4.39659 4.45111 4.46463 4.58446 4.64697 4.71995 4.76224 4.82632 4.84382 4.89936 4.95317 5.02075 5.06461 5.06776 5.16456 5.26051 5.34794 5.36978 5.40370 5.47085 5.51649 5.55090 5.69308 5.72821 5.80378 5.81082 6.28568 6.50271 6.66023 7.13539 7.19024 7.35639 7.83676 8.50708 9.26501 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.001751 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.243041 B =15987.937764 C =17053.703856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.009 4.009 4 C -0.063 4.063 5 N -0.512 5.512 6 C 0.203 3.797 7 C -0.045 4.045 8 C 0.508 3.492 9 O -0.577 6.577 10 N -0.712 5.712 11 C 0.127 3.873 12 C -0.105 4.105 13 C -0.114 4.114 14 C 0.152 3.848 15 H 0.038 0.962 16 C -0.111 4.111 17 C -0.137 4.137 18 C 0.174 3.826 19 N -0.620 5.620 20 C -0.230 4.230 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.970 3.030 25 H -0.291 1.291 26 H -0.294 1.294 27 H -0.268 1.268 28 N -0.551 5.551 29 H 0.433 0.567 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.421 0.579 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.030 0.970 50 H -0.011 1.011 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.112 -14.895 7.885 33.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.125 4.125 4 C -0.210 4.210 5 N -0.232 5.232 6 C -0.062 4.062 7 C -0.085 4.085 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.366 5.366 11 C 0.002 3.998 12 C -0.143 4.143 13 C -0.155 4.155 14 C 0.046 3.954 15 H 0.056 0.944 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.048 3.952 19 N -0.344 5.344 20 C -0.360 4.360 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.799 3.201 25 H -0.218 1.218 26 H -0.221 1.221 27 H -0.192 1.192 28 N -0.156 5.156 29 H 0.274 0.726 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.187 0.813 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.118 0.882 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.048 0.952 50 H 0.007 0.993 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -28.343 -14.602 6.614 32.562 hybrid contribution 1.342 -0.975 0.252 1.678 sum -27.001 -15.578 6.866 31.920 Atomic orbital electron populations 1.21739 0.93548 1.02827 1.01957 1.20112 0.96599 0.87013 1.04588 1.21659 1.06960 0.97243 0.86666 1.22390 1.07836 0.90883 0.99906 1.70155 1.18088 1.24881 1.10028 1.22680 1.04319 0.88313 0.90863 1.20070 0.93409 0.95507 0.99562 1.20894 0.87653 0.79657 0.82438 1.90782 1.68381 1.56948 1.29465 1.45787 1.19672 1.35595 1.35559 1.21180 0.83748 0.96799 0.98046 1.21617 0.95993 0.97113 0.99616 1.21847 0.95835 0.98708 0.99086 1.21236 0.84037 0.94503 0.95624 0.94375 1.22590 0.96695 0.92936 1.02615 1.22880 0.96205 0.98168 1.00302 1.21214 0.95619 0.84105 0.94226 1.44873 1.04242 1.06676 1.78640 1.19300 0.91580 0.98680 1.26393 0.90599 1.25672 1.01549 0.99024 0.99765 1.70152 1.27192 1.21973 1.40554 0.85201 0.78898 0.78097 0.77934 1.21798 1.22059 1.19224 1.43015 1.50602 1.11549 1.10452 0.72569 0.90421 0.92912 0.92951 0.88880 0.89555 0.81323 0.82880 0.83666 0.74104 0.93706 0.93769 0.88991 0.89674 0.94690 0.94342 0.91218 0.88221 0.91666 0.90172 0.95185 0.99303 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.04 -0.40 6.49 29.85 0.19 -0.20 16 3 C -0.01 -0.14 6.49 40.95 0.27 0.13 16 4 C -0.06 -1.48 11.79 83.52 0.98 -0.50 16 5 N -0.51 -14.70 10.60 -188.13 -1.99 -16.69 16 6 C 0.20 4.15 6.95 138.13 0.96 5.11 16 7 C -0.04 -0.56 6.33 29.10 0.18 -0.38 16 8 C 0.51 11.61 7.82 87.66 0.69 12.30 16 9 O -0.58 -20.78 15.56 -3.04 -0.05 -20.83 16 10 N -0.71 -12.87 5.56 -463.05 -2.57 -15.44 16 11 C 0.13 3.22 5.67 86.38 0.49 3.71 16 12 C -0.11 -2.40 5.10 30.60 0.16 -2.25 16 13 C -0.11 -4.02 4.72 30.60 0.14 -3.87 16 14 C 0.15 5.80 3.16 45.34 0.14 5.94 16 15 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 16 C -0.11 -3.35 5.72 31.78 0.18 -3.17 16 17 C -0.14 -4.88 7.09 31.99 0.23 -4.66 16 18 C 0.17 8.68 5.42 86.85 0.47 9.15 16 19 N -0.62 -31.70 3.13 -668.26 -2.09 -33.79 16 20 C -0.23 -13.03 9.71 84.03 0.82 -12.21 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 22 C -0.07 -3.92 5.47 84.86 0.46 -3.45 16 23 N -0.95 -58.70 10.56 21.65 0.23 -58.48 16 24 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 N -0.55 -7.84 6.15 -174.60 -1.07 -8.91 16 29 H 0.43 2.59 8.96 -92.71 -0.83 1.75 16 30 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 3.77 8.47 -92.71 -0.79 2.98 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.09 1.68 7.65 -2.39 -0.02 1.66 16 42 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 44 H 0.04 1.48 8.01 -2.39 -0.02 1.46 16 45 H 0.07 2.03 7.76 -2.39 -0.02 2.01 16 46 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.03 1.70 6.90 -2.39 -0.02 1.68 16 50 H -0.01 -0.61 8.07 -2.39 -0.02 -0.63 16 51 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -88.71 412.10 0.86 -87.85 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -0.70 Total: 11.73 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 7.08 Total: 5.36 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -7.50 Total: -133.31 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -88.71 0.86 -87.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480826979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.467 kcal (2) G-P(sol) polarization free energy of solvation -88.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds