Wall clock time and date at job start Tue Mar 31 2020 19:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47438 * 2 1 4 4 C 1.50696 * 109.47431 * 180.02562 * 3 2 1 5 5 N 1.30447 * 125.99331 * 270.19023 * 4 3 2 6 6 N 1.39935 * 108.90065 * 180.22612 * 5 4 3 7 7 H 0.96994 * 125.75658 * 179.73195 * 6 5 4 8 8 C 1.34262 * 108.48609 * 359.75038 * 6 5 4 9 9 C 1.38039 * 107.42068 * 359.97438 * 8 6 5 10 10 C 1.47427 * 126.41485 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00170 * 139.39334 * 10 9 8 12 12 N 1.34776 * 120.00269 * 319.67700 * 10 9 8 13 13 C 1.46924 * 120.63583 * 173.79999 * 12 10 9 14 14 C 1.53625 * 108.54468 * 126.36588 * 13 12 10 15 15 C 1.53037 * 109.23946 * 54.86137 * 14 13 12 16 16 C 1.53005 * 109.45677 * 178.49309 * 15 14 13 17 17 H 1.08998 * 109.47536 * 60.06653 * 16 15 14 18 18 C 1.52998 * 109.46883 * 180.02562 * 16 15 14 19 19 N 1.46497 * 109.46860 * 300.06311 * 16 15 14 20 20 C 1.36942 * 120.00000 * 155.00374 * 19 16 15 21 21 H 1.07994 * 119.99708 * 359.97438 * 20 19 16 22 22 C 1.38815 * 120.00080 * 180.02562 * 20 19 16 23 23 N 1.31611 * 120.00081 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99839 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47409 * 90.00034 * 24 22 20 26 26 H 1.48500 * 109.47074 * 209.99665 * 24 22 20 27 27 H 1.48498 * 109.47179 * 329.99898 * 24 22 20 28 28 C 1.53045 * 109.53555 * 298.50756 * 15 14 13 29 29 C 1.46935 * 120.62738 * 354.07876 * 12 10 9 30 30 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46445 * 299.99656 * 1 2 3 32 32 H 1.08999 * 109.46972 * 59.99105 * 1 2 3 33 33 H 1.09011 * 109.46754 * 240.00627 * 2 1 3 34 34 H 1.08996 * 109.47463 * 120.00946 * 2 1 3 35 35 H 1.08996 * 109.46792 * 60.00146 * 3 2 1 36 36 H 1.08996 * 109.47091 * 300.00646 * 3 2 1 37 37 H 1.08006 * 126.28362 * 180.02562 * 8 6 5 38 38 H 1.09001 * 109.58932 * 246.19951 * 13 12 10 39 39 H 1.09003 * 109.58403 * 6.62373 * 13 12 10 40 40 H 1.08996 * 109.63267 * 294.86365 * 14 13 12 41 41 H 1.09000 * 109.45519 * 174.74580 * 14 13 12 42 42 H 1.08998 * 109.46341 * 58.52843 * 15 14 13 43 43 H 1.09006 * 109.47227 * 59.99952 * 18 16 15 44 44 H 1.09003 * 109.46988 * 179.97438 * 18 16 15 45 45 H 1.08999 * 109.47590 * 299.99677 * 18 16 15 46 46 H 0.97008 * 120.00469 * 335.00147 * 19 16 15 47 47 H 0.96992 * 120.00267 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49723 * 301.41546 * 28 15 14 49 49 H 1.09001 * 109.49474 * 181.31860 * 28 15 14 50 50 H 1.08995 * 109.58732 * 353.37334 * 29 12 10 51 51 H 1.09000 * 109.58545 * 113.65811 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3141 1.4388 1.0545 6 7 5.6515 1.4455 0.6426 7 1 6.4248 1.4482 1.2281 8 6 5.6836 1.4478 -0.6996 9 6 4.3768 1.4421 -1.1443 10 6 3.9304 1.4427 -2.5493 11 8 2.9878 0.7531 -2.8882 12 7 4.5706 2.2030 -3.4595 13 6 4.2269 2.1130 -4.8851 14 6 3.9064 3.5243 -5.4005 15 6 5.0848 4.4521 -5.0960 16 6 4.7865 5.8504 -5.6407 17 1 3.8860 6.2407 -5.1665 18 6 5.9647 6.7780 -5.3369 19 7 4.5829 5.7768 -7.0896 20 6 3.8283 6.7273 -7.7241 21 1 3.3831 7.5308 -7.1563 22 6 3.6349 6.6573 -9.0969 23 7 2.9093 7.5705 -9.7066 24 14 4.4045 5.2670 -10.0788 25 1 3.4613 4.1214 -10.1378 26 1 4.6984 5.7375 -11.4563 27 1 5.6654 4.8367 -9.4230 28 6 5.2975 4.5292 -3.5823 29 6 5.6299 3.1334 -3.0456 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8902 34 1 1.8934 -0.5139 0.8898 35 1 1.6768 1.9562 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 6.5692 1.4524 -1.3178 38 1 5.0706 1.7015 -5.4392 39 1 3.3558 1.4699 -5.0111 40 1 3.0104 3.8999 -4.9065 41 1 3.7403 3.4886 -6.4772 42 1 5.9857 4.0624 -5.5699 43 1 6.8657 6.3881 -5.8106 44 1 5.7524 7.7741 -5.7253 45 1 6.1156 6.8327 -4.2588 46 1 4.9825 5.0549 -7.5996 47 1 2.7744 7.5218 -10.6659 48 1 4.3884 4.8954 -3.1054 49 1 6.1219 5.2084 -3.3650 50 1 5.6848 3.1639 -1.9575 51 1 6.5860 2.8021 -3.4506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481334323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:18 Heat of formation + Delta-G solvation = 11.399960 kcal Electronic energy + Delta-G solvation = -29701.703234 eV Core-core repulsion = 25829.295596 eV Total energy + Delta-G solvation = -3872.407638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.52971 -40.76596 -39.03945 -36.96088 -36.14212 -34.60071 -32.99340 -32.55854 -32.44022 -30.84287 -30.22825 -28.10053 -26.73970 -25.45060 -24.09183 -23.65914 -22.90083 -22.03907 -21.41490 -20.92122 -20.20262 -19.54764 -18.63466 -17.70576 -16.72976 -16.68100 -16.39943 -16.13865 -15.94359 -15.51823 -15.36807 -15.15431 -15.03139 -14.73268 -14.54516 -14.36505 -14.32578 -14.08601 -13.91681 -13.58791 -13.42973 -13.02524 -12.99222 -12.87982 -12.78649 -12.46094 -12.31577 -12.18583 -12.16290 -12.05043 -11.92482 -11.81955 -11.50351 -11.47682 -11.32238 -11.22289 -10.91072 -10.85253 -10.48231 -9.79755 -9.49559 -9.24591 -7.98873 -5.30485 0.63637 1.13012 1.38558 1.43094 1.49945 1.77937 2.04377 2.31653 2.51456 3.33304 3.42266 3.59112 3.72741 3.83660 3.84537 4.01945 4.11097 4.15389 4.18338 4.22433 4.36086 4.39452 4.43068 4.51818 4.57332 4.61979 4.66864 4.78685 4.81265 4.82756 4.86714 4.91012 4.95320 4.95625 5.03717 5.12064 5.13239 5.17195 5.27136 5.33298 5.33942 5.39825 5.43238 5.54241 5.66485 5.70081 5.82178 6.25990 6.29837 6.47501 6.60073 7.13338 7.27663 7.91046 8.09888 9.23479 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002758 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.329098 B =10150.154115 C =10897.867821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.040 4.040 4 C 0.118 3.882 5 N -0.319 5.319 6 N -0.445 5.445 7 H 0.461 0.539 8 C 0.130 3.870 9 C -0.310 4.310 10 C 0.590 3.410 11 O -0.581 6.581 12 N -0.603 5.603 13 C 0.120 3.880 14 C -0.119 4.119 15 C -0.081 4.081 16 C 0.174 3.826 17 H 0.028 0.972 18 C -0.157 4.157 19 N -0.748 5.748 20 C -0.220 4.220 21 H 0.050 0.950 22 C -0.070 4.070 23 N -0.990 5.990 24 Si 0.954 3.046 25 H -0.280 1.280 26 H -0.301 1.301 27 H -0.245 1.245 28 C -0.123 4.123 29 C 0.104 3.896 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.079 0.921 46 H 0.365 0.635 47 H 0.255 0.745 48 H 0.051 0.949 49 H 0.103 0.897 50 H 0.104 0.896 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.378 -16.294 24.414 31.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.079 4.079 4 C -0.049 4.049 5 N -0.142 5.142 6 N -0.152 5.152 7 H 0.310 0.690 8 C -0.023 4.023 9 C -0.325 4.325 10 C 0.379 3.621 11 O -0.461 6.461 12 N -0.335 5.335 13 C -0.003 4.003 14 C -0.157 4.157 15 C -0.100 4.100 16 C 0.067 3.933 17 H 0.046 0.954 18 C -0.216 4.216 19 N -0.392 5.392 20 C -0.351 4.351 21 H 0.068 0.932 22 C -0.260 4.260 23 N -0.641 5.641 24 Si 0.781 3.219 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.170 1.170 28 C -0.161 4.161 29 C -0.018 4.018 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.098 0.902 46 H 0.199 0.801 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.807 -16.467 25.524 32.240 hybrid contribution 0.056 -0.045 -2.031 2.033 sum 10.863 -16.512 23.493 30.701 Atomic orbital electron populations 1.21727 0.94465 1.02262 1.02002 1.21327 0.96694 0.94867 1.01612 1.20062 0.86004 0.98842 1.03028 1.22465 0.97153 0.95997 0.89302 1.77093 0.87723 1.26923 1.22440 1.46129 1.07346 1.55829 1.05870 0.68998 1.23674 0.98728 0.94372 0.85567 1.20182 0.93977 1.25107 0.93246 1.17661 0.81269 0.78644 0.84498 1.90739 1.29825 1.44471 1.81074 1.48054 1.38254 1.40454 1.06773 1.21627 1.01678 0.96630 0.80353 1.21868 0.98259 0.94852 1.00763 1.21320 0.98168 0.93810 0.96750 1.20451 0.95787 0.94627 0.82458 0.95391 1.22326 0.98972 0.99031 1.01305 1.42767 1.61441 1.30428 1.04527 1.18990 1.21637 1.03540 0.90972 0.93195 1.25501 1.01490 1.01310 0.97721 1.69890 1.46376 1.38522 1.09326 0.85420 0.79513 0.79222 0.77709 1.20680 1.22775 1.16965 1.21974 1.02919 0.97655 0.93565 1.22194 0.90320 0.87638 1.01651 0.91924 0.91542 0.93374 0.92972 0.91853 0.89402 0.91336 0.75326 0.89388 0.91079 0.93976 0.92107 0.89667 0.92565 0.95825 0.90209 0.80144 0.93576 0.93025 0.87877 0.87813 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 3 C -0.04 -0.86 5.30 29.85 0.16 -0.70 16 4 C 0.12 2.54 6.52 43.51 0.28 2.83 16 5 N -0.32 -6.04 12.63 -46.68 -0.59 -6.63 16 6 N -0.45 -4.45 7.29 -56.31 -0.41 -4.86 16 7 H 0.46 0.94 8.96 -213.43 -1.91 -0.97 16 8 C 0.13 1.29 9.64 84.27 0.81 2.10 16 9 C -0.31 -6.07 5.21 -20.15 -0.11 -6.17 16 10 C 0.59 14.74 7.32 86.66 0.63 15.38 16 11 O -0.58 -19.26 15.52 -4.05 -0.06 -19.32 16 12 N -0.60 -12.56 2.97 -821.93 -2.44 -15.00 16 13 C 0.12 2.89 6.47 86.51 0.56 3.45 16 14 C -0.12 -3.44 5.24 30.82 0.16 -3.28 16 15 C -0.08 -2.05 1.79 -10.76 -0.02 -2.07 16 16 C 0.17 6.07 2.47 44.99 0.11 6.18 16 17 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 18 C -0.16 -4.76 9.14 71.98 0.66 -4.11 16 19 N -0.75 -33.36 4.21 -322.94 -1.36 -34.72 16 20 C -0.22 -12.46 10.41 84.03 0.87 -11.58 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.99 -64.33 13.97 21.65 0.30 -64.02 16 24 Si 0.95 45.30 27.73 68.60 1.90 47.20 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 27 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 28 C -0.12 -2.21 5.04 30.67 0.15 -2.05 16 29 C 0.10 1.36 5.46 86.36 0.47 1.83 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.34 7.66 -2.38 -0.02 1.32 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.70 7.84 -2.39 -0.02 1.68 16 37 H 0.23 0.13 7.35 -2.91 -0.02 0.11 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.03 7.00 -2.39 -0.02 2.01 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 2.02 7.40 -2.39 -0.02 2.01 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.80 6.40 -2.39 -0.02 1.79 16 46 H 0.37 15.49 5.44 -92.70 -0.50 14.99 16 47 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.10 1.41 6.36 -2.39 -0.02 1.39 16 50 H 0.10 0.99 4.83 -2.39 -0.01 0.98 16 51 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -81.39 397.78 1.93 -79.47 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -1.54 Total: 23.67 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 6.12 Total: -5.78 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -4.50 Total: -125.24 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -81.39 1.93 -79.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481334323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.869 kcal (2) G-P(sol) polarization free energy of solvation -81.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds