Wall clock time and date at job start Tue Mar 31 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47277 * 2 1 4 4 C 1.35356 * 126.38610 * 85.32211 * 3 2 1 5 5 C 1.41501 * 105.50444 * 180.09070 * 4 3 2 6 6 C 1.47714 * 126.51974 * 179.90388 * 5 4 3 7 7 O 1.21563 * 120.00087 * 359.70564 * 6 5 4 8 8 N 1.34775 * 120.00039 * 179.71065 * 6 5 4 9 9 C 1.46494 * 120.00232 * 185.30325 * 8 6 5 10 10 H 1.09002 * 109.47177 * 355.18823 * 9 8 6 11 11 C 1.52996 * 109.47430 * 115.18422 * 9 8 6 12 12 N 1.46500 * 109.47370 * 305.00748 * 11 9 8 13 13 C 1.36939 * 120.00051 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99633 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00138 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47200 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46993 * 119.99767 * 17 15 13 20 20 H 1.48498 * 109.47264 * 240.00156 * 17 15 13 21 21 C 1.52997 * 109.47556 * 235.18948 * 9 8 6 22 22 C 1.54263 * 110.03773 * 180.51896 * 21 9 8 23 23 C 1.54889 * 104.19579 * 217.10536 * 22 21 9 24 24 C 1.54888 * 102.75215 * 37.94205 * 23 22 21 25 25 C 1.53880 * 110.03072 * 63.34740 * 21 9 8 26 26 N 1.31805 * 106.96159 * 359.63741 * 5 4 3 27 27 N 1.28468 * 110.07662 * 0.23025 * 26 5 4 28 28 C 1.46496 * 124.88877 * 180.02562 * 27 26 5 29 29 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47038 * 299.99856 * 1 2 3 31 31 H 1.09000 * 109.47241 * 59.99746 * 1 2 3 32 32 H 1.09002 * 109.47038 * 240.00144 * 2 1 3 33 33 H 1.09000 * 109.47241 * 120.00254 * 2 1 3 34 34 H 1.08003 * 127.24956 * 359.97133 * 4 3 2 35 35 H 0.97002 * 120.00303 * 5.30269 * 8 6 5 36 36 H 1.08998 * 109.47437 * 185.00119 * 11 9 8 37 37 H 1.09005 * 109.46937 * 65.00059 * 11 9 8 38 38 H 0.96993 * 119.99692 * 359.97438 * 12 11 9 39 39 H 0.96999 * 119.99730 * 179.97438 * 16 15 13 40 40 H 1.09004 * 110.01333 * 301.96388 * 21 9 8 41 41 H 1.09004 * 110.48507 * 335.78157 * 22 21 9 42 42 H 1.09000 * 110.49048 * 98.42368 * 22 21 9 43 43 H 1.08995 * 110.75540 * 279.62322 * 23 22 21 44 44 H 1.09006 * 110.75415 * 156.25844 * 23 22 21 45 45 H 1.08997 * 110.48639 * 203.38147 * 24 23 22 46 46 H 1.08997 * 110.59925 * 80.78442 * 24 23 22 47 47 H 1.08997 * 110.03134 * 238.56648 * 25 21 9 48 48 H 1.08992 * 110.03361 * 359.95669 * 25 21 9 49 49 H 1.09002 * 109.47306 * 89.97218 * 28 27 26 50 50 H 1.08999 * 109.47220 * 209.97300 * 28 27 26 51 51 H 1.08999 * 109.47151 * 329.97259 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2162 2.2075 1.0860 5 6 2.6937 3.4410 0.5832 6 6 3.0447 4.6368 1.3761 7 8 2.9273 4.6199 2.5859 8 7 3.4951 5.7467 0.7583 9 6 3.9529 6.8911 1.5499 10 1 3.7761 6.6953 2.6076 11 6 5.4489 7.1083 1.3147 12 7 6.1740 5.8691 1.6059 13 6 7.5354 5.8230 1.4647 14 1 8.0744 6.7001 1.1384 15 6 8.2224 4.6489 1.7411 16 7 7.5655 3.5802 2.1393 17 14 10.0793 4.5858 1.5479 18 1 10.5748 5.9093 1.0918 19 1 10.7016 4.2479 2.8532 20 1 10.4379 3.5503 0.5457 21 6 3.1830 8.1441 1.1277 22 6 3.6645 9.3607 1.9449 23 6 2.3771 10.1857 2.1920 24 6 1.3091 9.0897 2.4309 25 6 1.6855 7.9717 1.4366 26 7 2.7712 3.3180 -0.7268 27 7 2.3886 2.1445 -1.0830 28 6 2.3456 1.6607 -2.4651 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0347 1.9489 2.1188 35 1 3.5161 5.7878 -0.2107 36 1 5.8083 7.9020 1.9697 37 1 5.6160 7.3913 0.2754 38 1 5.6899 5.0813 1.8986 39 1 8.0456 2.7597 2.3320 40 1 3.3258 8.3285 0.0629 41 1 4.0978 9.0372 2.8913 42 1 4.3868 9.9429 1.3728 43 1 2.1275 10.7838 1.3157 44 1 2.4864 10.8174 3.0737 45 1 0.3127 9.4741 2.2134 46 1 1.3599 8.7217 3.4556 47 1 1.1014 8.0735 0.5220 48 1 1.5071 6.9952 1.8866 49 1 3.3001 1.1993 -2.7185 50 1 1.5478 0.9252 -2.5680 51 1 2.1569 2.4977 -3.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484014778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:34 Heat of formation + Delta-G solvation = 32.692800 kcal Electronic energy + Delta-G solvation = -29806.193960 eV Core-core repulsion = 25934.709649 eV Total energy + Delta-G solvation = -3871.484311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.49153 -39.49971 -37.78883 -35.13770 -34.46368 -33.39245 -33.23552 -31.09730 -29.67729 -29.18957 -28.51034 -27.35749 -26.04028 -23.88862 -23.51924 -22.58623 -21.11296 -20.61054 -20.34817 -19.73437 -18.99191 -17.11584 -16.99239 -16.26525 -16.14512 -15.90529 -15.23346 -14.94158 -14.67158 -14.41865 -14.08004 -14.06172 -13.48921 -13.41661 -13.25372 -13.18685 -13.03709 -12.85795 -12.63574 -12.47315 -12.34303 -11.97815 -11.73992 -11.32908 -11.29981 -11.13688 -10.95495 -10.88994 -10.81291 -10.74892 -10.57336 -10.54065 -10.39747 -10.16941 -9.94394 -9.60836 -9.55803 -8.89513 -8.77862 -8.73904 -8.38002 -6.78705 -5.63187 -2.92235 1.89814 2.33938 2.57671 3.48822 3.53747 3.56537 3.62922 3.97486 4.40042 4.51047 4.64778 4.76185 4.78300 4.80370 4.90341 4.94491 5.05250 5.10015 5.20542 5.33904 5.34161 5.44337 5.59939 5.60365 5.64931 5.67153 5.72658 5.75604 5.79564 5.84395 5.87955 5.94744 6.00366 6.00910 6.10491 6.12516 6.16038 6.24400 6.41033 6.43951 6.48123 6.61447 6.63561 6.63856 6.83597 6.91155 7.14585 7.79439 7.94420 8.22961 8.54048 8.78078 9.65306 10.25815 10.60819 11.58876 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.006529 B = 0.004807 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4287.641124 B = 5823.917045 C = 9268.501086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.006 3.994 4 C -0.172 4.172 5 C -0.001 4.001 6 C 0.611 3.389 7 O -0.534 6.534 8 N -0.699 5.699 9 C 0.138 3.862 10 H 0.101 0.899 11 C 0.143 3.857 12 N -0.728 5.728 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.927 5.927 17 Si 0.904 3.096 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.293 1.293 21 C -0.096 4.096 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.118 4.118 26 N -0.260 5.260 27 N -0.284 5.284 28 C 0.087 3.913 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.402 0.598 36 H 0.030 0.970 37 H 0.018 0.982 38 H 0.387 0.613 39 H 0.253 0.747 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.235 -0.344 -8.282 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.200 4.200 5 C -0.161 4.161 6 C 0.395 3.605 7 O -0.409 6.409 8 N -0.349 5.349 9 C 0.033 3.967 10 H 0.119 0.881 11 C 0.014 3.986 12 N -0.373 5.373 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.576 5.576 17 Si 0.735 3.265 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.221 1.221 21 C -0.116 4.116 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.155 4.155 26 N -0.095 5.095 27 N -0.072 5.072 28 C -0.054 4.054 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.177 0.823 35 H 0.236 0.764 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.221 0.779 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.109 0.891 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.828 0.236 -8.532 19.766 hybrid contribution 0.957 -0.902 0.025 1.316 sum -16.871 -0.666 -8.506 18.905 Atomic orbital electron populations 1.21763 0.94290 1.01909 1.02501 1.20073 0.96127 0.89060 1.03839 1.21279 1.06726 0.96789 0.86991 1.21468 1.06591 0.92523 0.99444 1.21904 1.07471 0.97028 0.89731 1.16763 0.76437 0.81025 0.86237 1.90770 1.54323 1.82575 1.13185 1.45588 1.64220 1.14701 1.10348 1.21483 0.94011 0.83753 0.97462 0.88071 1.21045 0.88841 0.91061 0.97648 1.42323 1.04386 1.09322 1.81267 1.19253 0.83446 0.96464 1.37742 0.91273 1.24743 0.97666 0.96086 1.02513 1.69713 1.34050 1.01608 1.52214 0.86161 0.86007 0.77149 0.77159 1.20611 1.21929 1.22085 1.22056 0.94737 0.94557 1.00213 1.22395 0.97092 0.95374 1.00542 1.22491 0.95402 0.97300 1.00941 1.22354 0.98174 0.95892 0.99750 1.22159 0.95262 0.99307 0.98796 1.73504 1.17920 1.02820 1.15263 1.45210 1.45989 1.08486 1.07554 1.22087 1.04005 1.01312 0.77949 0.91945 0.91880 0.92946 0.90904 0.89112 0.82330 0.76414 0.95193 0.96413 0.77897 0.93749 0.90899 0.90859 0.91412 0.91868 0.91844 0.92296 0.91635 0.92415 0.91347 0.89812 0.89052 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.05 -0.47 6.00 -27.88 -0.17 -0.63 16 3 C 0.01 0.08 6.17 -82.21 -0.51 -0.43 16 4 C -0.17 -2.87 10.73 -39.37 -0.42 -3.30 16 5 C 0.00 -0.02 7.13 -82.77 -0.59 -0.61 16 6 C 0.61 12.53 7.06 -12.39 -0.09 12.44 16 7 O -0.53 -12.41 16.27 5.31 0.09 -12.32 16 8 N -0.70 -12.82 4.00 -54.80 -0.22 -13.04 16 9 C 0.14 2.48 1.70 -67.94 -0.12 2.37 16 10 H 0.10 2.08 6.91 -51.93 -0.36 1.72 16 11 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 12 N -0.73 -19.82 5.43 -59.91 -0.33 -20.15 16 13 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 14 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -29.83 13.06 55.49 0.72 -29.10 16 17 Si 0.90 23.37 29.55 -169.99 -5.02 18.35 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 20 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 21 C -0.10 -1.34 2.71 -89.50 -0.24 -1.58 16 22 C -0.12 -1.49 5.33 -25.07 -0.13 -1.62 16 23 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 24 C -0.12 -1.43 6.83 -25.07 -0.17 -1.61 16 25 C -0.12 -1.54 6.23 -25.61 -0.16 -1.70 16 26 N -0.26 -4.41 11.68 33.42 0.39 -4.02 16 27 N -0.28 -3.87 3.70 -63.85 -0.24 -4.11 16 28 C 0.09 0.72 10.89 59.84 0.65 1.37 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.52 7.42 -51.93 -0.39 0.14 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.16 2.52 8.06 -52.48 -0.42 2.10 16 35 H 0.40 6.85 8.57 -40.82 -0.35 6.50 16 36 H 0.03 0.63 7.22 -51.93 -0.38 0.26 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.39 11.45 6.80 -40.82 -0.28 11.17 16 39 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.02 7.58 -51.93 -0.39 0.63 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.05 7.33 -51.93 -0.38 0.67 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.48 7.45 -51.93 -0.39 0.09 16 51 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 411.18 15.07 6.20 6.20 Total: -1.00 -36.87 411.18 -9.22 -46.09 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -8.80 Total: 14.32 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.02 Total: -2.21 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: 0.33 Total: -70.42 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.87 -9.22 -46.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484014778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.784 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds