Wall clock time and date at job start Tue Mar 31 2020 18:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47277 * 2 1 4 4 C 1.35356 * 126.38610 * 85.32211 * 3 2 1 5 5 C 1.41501 * 105.50444 * 180.09070 * 4 3 2 6 6 C 1.47714 * 126.51974 * 179.90388 * 5 4 3 7 7 O 1.21563 * 120.00087 * 359.70564 * 6 5 4 8 8 N 1.34775 * 120.00039 * 179.71065 * 6 5 4 9 9 C 1.46494 * 120.00232 * 185.30325 * 8 6 5 10 10 H 1.09002 * 109.47177 * 355.18823 * 9 8 6 11 11 C 1.52996 * 109.47430 * 115.18422 * 9 8 6 12 12 N 1.46500 * 109.47370 * 305.00748 * 11 9 8 13 13 C 1.36939 * 120.00051 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99633 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00138 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47200 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46993 * 119.99767 * 17 15 13 20 20 H 1.48498 * 109.47264 * 240.00156 * 17 15 13 21 21 C 1.52997 * 109.47556 * 235.18948 * 9 8 6 22 22 C 1.54263 * 110.03773 * 180.51896 * 21 9 8 23 23 C 1.54889 * 104.19579 * 217.10536 * 22 21 9 24 24 C 1.54888 * 102.75215 * 37.94205 * 23 22 21 25 25 C 1.53880 * 110.03072 * 63.34740 * 21 9 8 26 26 N 1.31805 * 106.96159 * 359.63741 * 5 4 3 27 27 N 1.28468 * 110.07662 * 0.23025 * 26 5 4 28 28 C 1.46496 * 124.88877 * 180.02562 * 27 26 5 29 29 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47038 * 299.99856 * 1 2 3 31 31 H 1.09000 * 109.47241 * 59.99746 * 1 2 3 32 32 H 1.09002 * 109.47038 * 240.00144 * 2 1 3 33 33 H 1.09000 * 109.47241 * 120.00254 * 2 1 3 34 34 H 1.08003 * 127.24956 * 359.97133 * 4 3 2 35 35 H 0.97002 * 120.00303 * 5.30269 * 8 6 5 36 36 H 1.08998 * 109.47437 * 185.00119 * 11 9 8 37 37 H 1.09005 * 109.46937 * 65.00059 * 11 9 8 38 38 H 0.96993 * 119.99692 * 359.97438 * 12 11 9 39 39 H 0.96999 * 119.99730 * 179.97438 * 16 15 13 40 40 H 1.09004 * 110.01333 * 301.96388 * 21 9 8 41 41 H 1.09004 * 110.48507 * 335.78157 * 22 21 9 42 42 H 1.09000 * 110.49048 * 98.42368 * 22 21 9 43 43 H 1.08995 * 110.75540 * 279.62322 * 23 22 21 44 44 H 1.09006 * 110.75415 * 156.25844 * 23 22 21 45 45 H 1.08997 * 110.48639 * 203.38147 * 24 23 22 46 46 H 1.08997 * 110.59925 * 80.78442 * 24 23 22 47 47 H 1.08997 * 110.03134 * 238.56648 * 25 21 9 48 48 H 1.08992 * 110.03361 * 359.95669 * 25 21 9 49 49 H 1.09002 * 109.47306 * 89.97218 * 28 27 26 50 50 H 1.08999 * 109.47220 * 209.97300 * 28 27 26 51 51 H 1.08999 * 109.47151 * 329.97259 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2162 2.2075 1.0860 5 6 2.6937 3.4410 0.5832 6 6 3.0447 4.6368 1.3761 7 8 2.9273 4.6199 2.5859 8 7 3.4951 5.7467 0.7583 9 6 3.9529 6.8911 1.5499 10 1 3.7761 6.6953 2.6076 11 6 5.4489 7.1083 1.3147 12 7 6.1740 5.8691 1.6059 13 6 7.5354 5.8230 1.4647 14 1 8.0744 6.7001 1.1384 15 6 8.2224 4.6489 1.7411 16 7 7.5655 3.5802 2.1393 17 14 10.0793 4.5858 1.5479 18 1 10.5748 5.9093 1.0918 19 1 10.7016 4.2479 2.8532 20 1 10.4379 3.5503 0.5457 21 6 3.1830 8.1441 1.1277 22 6 3.6645 9.3607 1.9449 23 6 2.3771 10.1857 2.1920 24 6 1.3091 9.0897 2.4309 25 6 1.6855 7.9717 1.4366 26 7 2.7712 3.3180 -0.7268 27 7 2.3886 2.1445 -1.0830 28 6 2.3456 1.6607 -2.4651 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0347 1.9489 2.1188 35 1 3.5161 5.7878 -0.2107 36 1 5.8083 7.9020 1.9697 37 1 5.6160 7.3913 0.2754 38 1 5.6899 5.0813 1.8986 39 1 8.0456 2.7597 2.3320 40 1 3.3258 8.3285 0.0629 41 1 4.0978 9.0372 2.8913 42 1 4.3868 9.9429 1.3728 43 1 2.1275 10.7838 1.3157 44 1 2.4864 10.8174 3.0737 45 1 0.3127 9.4741 2.2134 46 1 1.3599 8.7217 3.4556 47 1 1.1014 8.0735 0.5220 48 1 1.5071 6.9952 1.8866 49 1 3.3001 1.1993 -2.7185 50 1 1.5478 0.9252 -2.5680 51 1 2.1569 2.4977 -3.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484014778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:30 Heat of formation + Delta-G solvation = 7.668547 kcal Electronic energy + Delta-G solvation = -29807.279093 eV Core-core repulsion = 25934.709649 eV Total energy + Delta-G solvation = -3872.569444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -43.67087 -40.96892 -39.09669 -36.85260 -35.44014 -35.14015 -34.31551 -33.02930 -31.20539 -30.23527 -29.55490 -28.38291 -27.69346 -25.39098 -24.55672 -24.17610 -22.57281 -21.90628 -21.42203 -21.01319 -20.22782 -19.22321 -18.17873 -17.58885 -17.28044 -17.17632 -16.77123 -16.37000 -16.11759 -15.51563 -15.44590 -15.26647 -15.11225 -14.88086 -14.79022 -14.26831 -14.18445 -13.96886 -13.77082 -13.57877 -13.40996 -13.21174 -13.01892 -12.90014 -12.66882 -12.49159 -12.24429 -12.10896 -12.05535 -11.93720 -11.89205 -11.83290 -11.71612 -11.65794 -11.43960 -11.38208 -11.16617 -10.95351 -10.17596 -9.91530 -9.85394 -9.01437 -7.94057 -5.24986 0.56362 1.12015 1.42516 1.45249 1.55306 1.59430 2.18590 2.47636 2.54070 3.34091 3.38335 3.55540 3.62120 3.72793 3.81492 3.94671 4.14165 4.17520 4.22499 4.33396 4.37148 4.42459 4.47963 4.55754 4.57799 4.60474 4.63819 4.71237 4.71314 4.74656 4.80051 4.83382 4.87308 4.91542 5.04425 5.06431 5.11372 5.15426 5.18631 5.28598 5.32890 5.34132 5.39102 5.46081 5.47693 5.53283 5.62518 5.90886 6.24916 6.49108 6.92731 7.24050 7.30921 8.07723 8.31053 9.29370 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.006529 B = 0.004807 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4287.641124 B = 5823.917045 C = 9268.501086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C 0.026 3.974 4 C -0.209 4.209 5 C -0.040 4.040 6 C 0.604 3.396 7 O -0.577 6.577 8 N -0.690 5.690 9 C 0.148 3.852 10 H 0.069 0.931 11 C 0.142 3.858 12 N -0.745 5.745 13 C -0.244 4.244 14 H 0.080 0.920 15 C -0.080 4.080 16 N -0.971 5.971 17 Si 0.978 3.022 18 H -0.261 1.261 19 H -0.294 1.294 20 H -0.293 1.293 21 C -0.087 4.087 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.114 4.114 26 N -0.272 5.272 27 N -0.276 5.276 28 C 0.072 3.928 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.408 0.592 36 H 0.038 0.962 37 H 0.031 0.969 38 H 0.370 0.630 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.094 0.906 50 H 0.130 0.870 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.785 0.065 -10.922 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.099 4.099 4 C -0.238 4.238 5 C -0.198 4.198 6 C 0.390 3.610 7 O -0.455 6.455 8 N -0.338 5.338 9 C 0.043 3.957 10 H 0.087 0.913 11 C 0.015 3.985 12 N -0.387 5.387 13 C -0.376 4.376 14 H 0.098 0.902 15 C -0.272 4.272 16 N -0.622 5.622 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.222 1.222 20 H -0.220 1.220 21 C -0.107 4.107 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.152 4.152 26 N -0.109 5.109 27 N -0.065 5.065 28 C -0.066 4.066 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.169 0.831 35 H 0.244 0.756 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.112 0.888 50 H 0.148 0.852 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.382 0.716 -11.225 21.550 hybrid contribution 1.077 -1.069 0.772 1.703 sum -17.305 -0.353 -10.453 20.220 Atomic orbital electron populations 1.21736 0.92769 1.03372 1.02106 1.20298 0.97252 0.86013 1.05406 1.21857 1.04160 0.98070 0.85784 1.21639 1.08672 0.92969 1.00470 1.21800 1.09996 0.97222 0.90777 1.17148 0.75953 0.81905 0.86020 1.90719 1.56365 1.83425 1.14987 1.45526 1.63380 1.14383 1.10559 1.21364 0.92813 0.85582 0.95936 0.91262 1.21243 0.90253 0.88919 0.98108 1.42574 1.04195 1.10603 1.81353 1.19725 0.84643 0.96723 1.36471 0.90188 1.25668 1.02747 0.95781 1.02968 1.69918 1.35972 1.02191 1.54085 0.85009 0.79861 0.77793 0.76704 1.18539 1.22161 1.22036 1.22031 0.94727 0.92679 1.01254 1.22426 0.98530 0.95187 0.99530 1.22464 0.93461 0.96872 1.02330 1.22358 0.99674 0.95540 0.98497 1.22114 0.94801 0.98448 0.99831 1.73411 1.18576 1.04750 1.14201 1.45777 1.43763 1.07408 1.09534 1.22627 1.06124 1.02741 0.75121 0.89504 0.93417 0.92289 0.87960 0.88917 0.83086 0.75634 0.94456 0.95104 0.79805 0.94306 0.89227 0.92750 0.90212 0.89910 0.90717 0.90233 0.92953 0.90693 0.94409 0.88789 0.85177 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.05 -0.80 6.00 29.85 0.18 -0.62 16 3 C 0.03 0.70 6.17 41.40 0.26 0.95 16 4 C -0.21 -7.43 10.73 22.41 0.24 -7.19 16 5 C -0.04 -1.59 7.13 42.46 0.30 -1.28 16 6 C 0.60 26.80 7.06 86.75 0.61 27.41 16 7 O -0.58 -29.46 16.27 -3.91 -0.06 -29.52 16 8 N -0.69 -26.76 4.00 -445.56 -1.78 -28.54 16 9 C 0.15 5.58 1.70 44.99 0.08 5.66 16 10 H 0.07 3.09 6.91 -2.39 -0.02 3.07 16 11 C 0.14 6.14 5.61 86.38 0.48 6.62 16 12 N -0.74 -41.87 5.43 -343.45 -1.87 -43.74 16 13 C -0.24 -14.56 9.99 84.03 0.84 -13.73 16 14 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 15 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 16 N -0.97 -64.54 13.06 21.65 0.28 -64.26 16 17 Si 0.98 48.65 29.55 68.60 2.03 50.68 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 21 C -0.09 -2.41 2.71 -10.07 -0.03 -2.43 16 22 C -0.12 -2.92 5.33 31.67 0.17 -2.75 16 23 C -0.11 -2.23 6.91 31.88 0.22 -2.01 16 24 C -0.12 -2.71 6.83 31.67 0.22 -2.50 16 25 C -0.11 -2.98 6.23 31.32 0.20 -2.79 16 26 N -0.27 -9.45 11.68 -48.18 -0.56 -10.01 16 27 N -0.28 -7.27 3.70 -355.93 -1.32 -8.58 16 28 C 0.07 0.99 10.89 127.77 1.39 2.38 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.05 7.42 -2.39 -0.02 1.04 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.15 5.34 8.06 -2.91 -0.02 5.32 16 35 H 0.41 14.47 8.57 -92.71 -0.79 13.67 16 36 H 0.04 1.58 7.22 -2.39 -0.02 1.56 16 37 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.37 23.11 6.80 -92.71 -0.63 22.48 16 39 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.05 1.54 7.58 -2.39 -0.02 1.52 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.04 1.22 7.33 -2.39 -0.02 1.20 16 49 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.13 0.79 7.45 -2.39 -0.02 0.78 16 51 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -84.94 411.18 2.56 -82.39 By element: Atomic # 1 Polarization: 49.84 SS G_CDS: -0.50 Total: 49.34 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.34 Total: 2.25 kcal Atomic # 7 Polarization: -149.89 SS G_CDS: -5.25 Total: -155.14 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.06 Total: -29.52 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -84.94 2.56 -82.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484014778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.055 kcal (2) G-P(sol) polarization free energy of solvation -84.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds