Wall clock time and date at job start Tue Mar 31 2020 18:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47018 * 2 1 4 4 N 1.30496 * 125.65325 * 270.04126 * 3 2 1 5 5 C 1.34129 * 109.25929 * 179.97438 * 4 3 2 6 6 C 1.34670 * 108.02107 * 359.72952 * 5 4 3 7 7 N 1.35048 * 125.64912 * 90.00455 * 3 2 1 8 8 C 1.46507 * 126.39543 * 0.03129 * 7 3 2 9 9 H 1.08998 * 109.47053 * 0.02562 * 8 7 3 10 10 C 1.52995 * 109.47015 * 239.99959 * 8 7 3 11 11 C 1.52998 * 109.46652 * 120.00303 * 8 7 3 12 12 C 1.50705 * 109.47054 * 184.99953 * 11 8 7 13 13 O 1.21279 * 119.99571 * 0.02562 * 12 11 8 14 14 N 1.34777 * 120.00278 * 179.97438 * 12 11 8 15 15 C 1.46495 * 120.00030 * 180.02562 * 14 12 11 16 16 C 1.53006 * 110.78061 * 303.23840 * 15 14 12 17 17 C 1.55151 * 110.72020 * 180.02562 * 15 14 12 18 18 C 1.54914 * 101.58023 * 277.13513 * 17 15 14 19 19 N 1.47420 * 104.83159 * 322.99181 * 18 17 15 20 20 C 1.36945 * 125.64792 * 204.08975 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47020 * 108.70626 * 24.35323 * 19 18 17 29 29 H 1.08995 * 109.47062 * 59.99523 * 1 2 3 30 30 H 1.08997 * 109.46743 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46668 * 299.99824 * 1 2 3 32 32 H 1.09000 * 109.46939 * 240.00613 * 2 1 3 33 33 H 1.08995 * 109.47062 * 120.00477 * 2 1 3 34 34 H 1.07996 * 125.99246 * 180.02562 * 5 4 3 35 35 H 1.07998 * 126.59670 * 180.28002 * 6 5 4 36 36 H 1.08999 * 109.46989 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47722 * 300.00217 * 10 8 7 38 38 H 1.08998 * 109.47119 * 60.00394 * 10 8 7 39 39 H 1.09004 * 109.47758 * 65.00245 * 11 8 7 40 40 H 1.08998 * 109.47229 * 304.99673 * 11 8 7 41 41 H 0.97000 * 119.99444 * 0.02562 * 14 12 11 42 42 H 1.08995 * 109.47166 * 296.76593 * 16 15 14 43 43 H 1.09000 * 109.47069 * 56.76058 * 16 15 14 44 44 H 1.08991 * 109.47197 * 176.76236 * 16 15 14 45 45 H 1.09002 * 111.00697 * 159.06407 * 17 15 14 46 46 H 1.08994 * 111.00548 * 35.20875 * 17 15 14 47 47 H 1.08999 * 110.37083 * 204.15142 * 18 17 15 48 48 H 1.08999 * 110.36305 * 81.82793 * 18 17 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.88406 * 118.12749 * 28 19 18 51 51 H 1.09001 * 109.88743 * 239.29401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1382 -1.0604 5 6 2.7138 3.3514 -0.6818 6 6 2.7214 3.3893 0.6644 7 7 2.2948 2.1628 1.0974 8 6 2.1449 1.7367 2.4911 9 1 1.7827 0.7091 2.5199 10 6 1.1433 2.6512 3.1991 11 6 3.4993 1.8196 3.1980 12 6 3.3720 1.2663 4.5940 13 8 2.3033 0.8466 4.9848 14 7 4.4458 1.2370 5.4079 15 6 4.3221 0.6986 6.7647 16 6 3.2379 1.4425 7.5472 17 6 5.6815 0.7689 7.5092 18 6 6.3850 -0.5115 6.9938 19 7 5.3103 -1.5148 6.8853 20 6 5.4796 -2.8731 6.9250 21 1 4.6245 -3.5267 6.8361 22 6 6.7504 -3.4099 7.0794 23 7 7.7925 -2.6133 7.1883 24 14 6.9813 -5.2628 7.1343 25 1 6.8823 -5.7326 8.5395 26 1 5.9274 -5.9173 6.3181 27 1 8.3177 -5.6114 6.5888 28 6 4.0274 -0.8157 6.7211 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9980 4.1583 -1.3409 35 1 3.0108 4.2257 1.2833 36 1 1.0315 2.3340 4.2359 37 1 1.5059 3.6787 3.1703 38 1 0.1785 2.5922 2.6954 39 1 3.8203 2.8601 3.2476 40 1 4.2352 1.2383 2.6426 41 1 5.3006 1.5724 5.0952 42 1 3.5241 2.4881 7.6601 43 1 2.2931 1.3808 7.0071 44 1 3.1241 0.9885 8.5315 45 1 5.5383 0.7281 8.5890 46 1 6.2375 1.6619 7.2239 47 1 7.1416 -0.8414 7.7056 48 1 6.8347 -0.3303 6.0176 49 1 8.6805 -2.9885 7.2966 50 1 3.5807 -1.0809 5.7628 51 1 3.3524 -1.0837 7.5339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484045427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:25 Heat of formation + Delta-G solvation = 44.369037 kcal Electronic energy + Delta-G solvation = -29939.098348 eV Core-core repulsion = 26068.120356 eV Total energy + Delta-G solvation = -3870.977992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.31967 -40.17434 -37.74602 -35.68270 -34.09441 -33.95682 -32.14457 -30.95970 -30.06723 -28.77487 -28.74685 -27.92820 -25.75216 -24.12037 -23.81501 -23.22148 -21.48577 -20.60984 -20.25631 -19.38807 -19.11543 -17.62635 -17.07537 -16.37926 -15.84191 -15.62387 -15.35261 -14.99763 -14.74228 -14.39231 -14.22456 -13.85079 -13.72031 -13.66446 -13.50778 -13.15252 -12.99016 -12.87888 -12.54790 -12.37098 -12.26929 -11.89299 -11.83605 -11.78652 -11.64441 -11.62647 -11.44975 -11.22089 -10.99344 -10.89507 -10.49958 -10.40789 -10.13870 -10.11409 -9.99855 -9.75957 -9.70611 -9.34203 -8.77286 -8.68710 -8.46301 -6.87275 -5.70305 -3.11155 1.92856 2.51686 2.68177 3.05597 3.36348 3.37827 3.42858 3.44559 4.22262 4.26939 4.45066 4.49762 4.58541 4.74756 4.87878 4.97485 5.08074 5.12391 5.14248 5.21557 5.26912 5.32446 5.40823 5.42982 5.47073 5.49887 5.56280 5.62462 5.66348 5.69694 5.82444 5.91811 5.98492 5.99855 6.09046 6.14977 6.25731 6.27914 6.38530 6.43124 6.60999 6.66947 6.72834 7.02324 7.08236 7.37790 7.57747 7.67107 7.78161 8.02455 8.28990 8.34250 9.17905 9.78667 10.42772 11.33989 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.002932 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.249408 B = 9546.079728 C =10543.551494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.212 3.788 4 N -0.494 5.494 5 C -0.032 4.032 6 C -0.057 4.057 7 N -0.447 5.447 8 C 0.147 3.853 9 H 0.112 0.888 10 C -0.163 4.163 11 C -0.153 4.153 12 C 0.522 3.478 13 O -0.536 6.536 14 N -0.704 5.704 15 C 0.159 3.841 16 C -0.151 4.151 17 C -0.147 4.147 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.290 1.290 28 C 0.139 3.861 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.399 0.601 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.010 0.990 49 H 0.252 0.748 50 H 0.029 0.971 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 14.069 -8.603 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.050 4.050 4 N -0.213 5.213 5 C -0.180 4.180 6 C -0.190 4.190 7 N -0.130 5.130 8 C 0.044 3.956 9 H 0.130 0.870 10 C -0.221 4.221 11 C -0.194 4.194 12 C 0.307 3.693 13 O -0.414 6.414 14 N -0.354 5.354 15 C 0.073 3.927 16 C -0.210 4.210 17 C -0.186 4.186 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.012 3.988 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.233 0.767 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.126 0.874 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.047 0.953 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.757 13.294 -8.953 19.303 hybrid contribution 0.941 -0.288 0.597 1.151 sum -9.817 13.006 -8.356 18.313 Atomic orbital electron populations 1.21732 0.93903 1.02377 1.02369 1.20004 0.96507 0.87463 1.04222 1.23281 1.03812 0.96615 0.81341 1.70233 1.18435 1.04292 1.28308 1.22240 1.06730 0.96257 0.92751 1.22584 1.09718 0.90029 0.96694 1.45637 1.48671 1.11510 1.07177 1.21170 0.95479 1.01632 0.77309 0.86992 1.22264 0.98059 0.98605 1.03141 1.22006 0.98623 1.03947 0.94821 1.20035 0.84394 0.78695 0.86205 1.90641 1.27343 1.47501 1.75927 1.45987 1.11971 1.63002 1.14414 1.21392 0.96627 0.94151 0.80549 1.22062 0.99776 0.99027 1.00101 1.23364 0.94416 1.00716 1.00103 1.21939 0.91914 0.84176 0.99223 1.44508 1.00898 1.01989 1.85618 1.19085 0.93103 0.80550 1.42070 0.90541 1.24765 0.95361 0.98112 1.02451 1.69771 0.98164 1.32241 1.57146 0.86071 0.77109 0.84634 0.77708 1.21557 1.20738 1.21651 1.21588 0.89863 0.88727 0.98597 0.92007 0.91510 0.92776 0.88704 0.90185 0.81597 0.81289 0.88197 0.92412 0.92101 0.88362 0.88171 0.76717 0.93257 0.90482 0.91762 0.90482 0.91904 0.87401 0.97240 0.93758 0.95275 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.90 37.16 0.37 -0.91 16 2 C -0.04 -0.43 6.08 -27.88 -0.17 -0.60 16 3 C 0.21 2.57 7.16 -155.42 -1.11 1.46 16 4 N -0.49 -6.73 11.25 -10.82 -0.12 -6.85 16 5 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 6 C -0.06 -0.57 10.70 -16.56 -0.18 -0.75 16 7 N -0.45 -4.82 2.61 -106.83 -0.28 -5.10 16 8 C 0.15 1.50 2.64 -67.93 -0.18 1.32 16 9 H 0.11 1.25 6.48 -51.93 -0.34 0.92 16 10 C -0.16 -1.55 8.99 37.15 0.33 -1.22 16 11 C -0.15 -1.54 5.19 -27.88 -0.14 -1.68 16 12 C 0.52 6.92 6.76 -10.98 -0.07 6.84 16 13 O -0.54 -8.39 10.95 5.56 0.06 -8.33 16 14 N -0.70 -9.81 5.14 -45.91 -0.24 -10.04 16 15 C 0.16 2.61 0.81 -129.98 -0.11 2.51 16 16 C -0.15 -2.18 8.44 37.16 0.31 -1.87 16 17 C -0.15 -2.52 6.07 -24.58 -0.15 -2.67 16 18 C 0.15 3.48 5.87 -2.53 -0.01 3.46 16 19 N -0.60 -15.13 3.39 -170.07 -0.58 -15.71 16 20 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 24 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.14 2.94 6.19 -3.06 -0.02 2.92 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.76 7.08 -51.93 -0.37 0.40 16 34 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.10 1.10 5.95 -51.93 -0.31 0.79 16 37 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.82 8.49 -40.82 -0.35 4.48 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.18 5.97 -51.93 -0.31 0.87 16 44 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 45 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 46 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 47 H 0.11 2.81 5.87 -51.93 -0.30 2.51 16 48 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.03 0.66 6.90 -51.93 -0.36 0.30 16 51 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 LS Contribution 398.84 15.07 6.01 6.01 Total: -1.00 -32.32 398.84 -9.80 -42.12 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.60 Total: 5.17 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.59 Total: 1.58 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.65 Total: -63.45 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.06 Total: -8.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.32 -9.80 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484045427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.489 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds