Wall clock time and date at job start Tue Mar 31 2020 18:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47589 * 2 1 4 4 N 1.30504 * 125.65057 * 270.17728 * 3 2 1 5 5 C 1.34120 * 109.25748 * 180.28632 * 4 3 2 6 6 C 1.34667 * 108.01930 * 359.72652 * 5 4 3 7 7 N 1.35041 * 125.65275 * 89.99310 * 3 2 1 8 8 C 1.46507 * 126.39495 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.46948 * 359.70273 * 8 7 3 10 10 C 1.52996 * 109.47021 * 119.70956 * 8 7 3 11 11 C 1.52998 * 109.46491 * 239.70831 * 8 7 3 12 12 C 1.50705 * 109.47054 * 174.99876 * 11 8 7 13 13 O 1.21279 * 119.99571 * 0.02562 * 12 11 8 14 14 N 1.34777 * 120.00278 * 179.97438 * 12 11 8 15 15 C 1.46495 * 120.00030 * 180.02562 * 14 12 11 16 16 C 1.53006 * 110.78061 * 303.23840 * 15 14 12 17 17 C 1.55151 * 110.72020 * 180.02562 * 15 14 12 18 18 C 1.54914 * 101.58023 * 277.13513 * 17 15 14 19 19 N 1.47420 * 104.83159 * 322.99181 * 18 17 15 20 20 C 1.36945 * 125.64792 * 204.08975 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47020 * 108.70626 * 24.35323 * 19 18 17 29 29 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47161 * 300.00645 * 1 2 3 31 31 H 1.09002 * 109.47195 * 60.00175 * 1 2 3 32 32 H 1.08999 * 109.47161 * 239.99355 * 2 1 3 33 33 H 1.09002 * 109.47195 * 119.99825 * 2 1 3 34 34 H 1.07998 * 125.99317 * 179.72428 * 5 4 3 35 35 H 1.08006 * 126.58999 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46576 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47217 * 299.99491 * 10 8 7 38 38 H 1.08999 * 109.47223 * 60.00205 * 10 8 7 39 39 H 1.09004 * 109.47758 * 55.00168 * 11 8 7 40 40 H 1.08998 * 109.47229 * 294.99596 * 11 8 7 41 41 H 0.97000 * 119.99444 * 0.02562 * 14 12 11 42 42 H 1.08995 * 109.47166 * 296.76593 * 16 15 14 43 43 H 1.09000 * 109.47069 * 56.76058 * 16 15 14 44 44 H 1.08991 * 109.47197 * 176.76236 * 16 15 14 45 45 H 1.09002 * 111.00697 * 159.06407 * 17 15 14 46 46 H 1.08994 * 111.00548 * 35.20875 * 17 15 14 47 47 H 1.08999 * 110.37083 * 204.15142 * 18 17 15 48 48 H 1.08998 * 110.45606 * 81.87777 * 18 17 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.88406 * 118.12749 * 28 19 18 51 51 H 1.09001 * 109.88743 * 239.29401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2829 2.1389 -1.0605 5 6 2.7190 3.3495 -0.6820 6 6 2.7337 3.3848 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1435 1.7374 2.4910 9 1 1.7748 0.7121 2.5199 10 6 3.4988 1.8122 3.1970 11 6 1.1477 2.6575 3.1998 12 6 0.8985 2.1477 4.5960 13 8 1.4624 1.1472 4.9857 14 7 0.0499 2.8042 5.4117 15 6 -0.1918 2.3088 6.7691 16 6 -0.6922 0.8632 6.7383 17 6 -1.1996 3.2223 7.5154 18 6 -0.2746 4.3567 8.0226 19 7 0.9843 3.6822 8.3880 20 6 1.9079 4.1478 9.2855 21 1 2.8027 3.5769 9.4847 22 6 1.6940 5.3536 9.9389 23 7 0.6033 6.0492 9.6964 24 14 2.9536 5.9885 11.1636 25 1 2.4936 7.2867 11.7188 26 1 3.1111 5.0061 12.2659 27 1 4.2578 6.1778 10.4791 28 6 1.0869 2.4298 7.6248 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0077 4.1548 -1.3411 35 1 3.0338 4.2176 1.2831 36 1 3.3861 1.4961 4.2341 37 1 4.2082 1.1567 2.6920 38 1 3.8674 2.8376 3.1681 39 1 0.2090 2.6728 2.6458 40 1 1.5569 3.6666 3.2492 41 1 -0.4007 3.6046 5.1000 42 1 -1.6525 0.8221 6.2244 43 1 0.0295 0.2401 6.2101 44 1 -0.8100 0.4978 7.7584 45 1 -1.6629 2.6940 8.3487 46 1 -1.9552 3.6103 6.8324 47 1 -0.7123 4.8417 8.8951 48 1 -0.0984 5.0865 7.2324 49 1 0.4537 6.8917 10.1534 50 1 1.9653 2.4595 6.9800 51 1 1.1548 1.5835 8.3084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484045428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:31 Heat of formation + Delta-G solvation = 44.309353 kcal Electronic energy + Delta-G solvation = -29975.554765 eV Core-core repulsion = 26104.574185 eV Total energy + Delta-G solvation = -3870.980580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32887 -40.17289 -37.74267 -35.67668 -34.09750 -34.01968 -32.14820 -30.96330 -30.04489 -28.79185 -28.74567 -27.90714 -25.74783 -24.19019 -23.78463 -23.22194 -21.47825 -20.61904 -20.27415 -19.38754 -19.11591 -17.65200 -17.06072 -16.34312 -15.86159 -15.60481 -15.42606 -15.00540 -14.73614 -14.37245 -14.22970 -13.89139 -13.68562 -13.61232 -13.60867 -13.13762 -12.98311 -12.90807 -12.53116 -12.38003 -12.17884 -11.91962 -11.84875 -11.79623 -11.66609 -11.62764 -11.46127 -11.26061 -11.00111 -10.89085 -10.51906 -10.40939 -10.17114 -10.13307 -9.99161 -9.74857 -9.71117 -9.34531 -8.77278 -8.69019 -8.47093 -6.88009 -5.70878 -3.11765 1.92489 2.50455 2.69340 3.04368 3.35717 3.37571 3.41651 3.42728 4.21919 4.24487 4.44398 4.49210 4.56984 4.74086 4.87234 4.95634 5.00974 5.11968 5.17621 5.21809 5.27405 5.32346 5.39519 5.42736 5.45423 5.49730 5.56329 5.63211 5.66243 5.70377 5.77939 5.91346 5.94835 6.06659 6.10164 6.15371 6.25372 6.28476 6.38857 6.43595 6.61063 6.66611 6.72494 7.02026 7.07807 7.37308 7.56729 7.66956 7.77761 8.00738 8.28615 8.34210 9.17244 9.78013 10.42242 11.33311 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.002767 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.345983 B =10115.207686 C =10967.894868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C 0.207 3.793 4 N -0.494 5.494 5 C -0.033 4.033 6 C -0.054 4.054 7 N -0.447 5.447 8 C 0.149 3.851 9 H 0.110 0.890 10 C -0.166 4.166 11 C -0.153 4.153 12 C 0.522 3.478 13 O -0.536 6.536 14 N -0.704 5.704 15 C 0.159 3.841 16 C -0.152 4.152 17 C -0.147 4.147 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.139 3.861 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.399 0.601 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.010 0.990 49 H 0.252 0.748 50 H 0.029 0.971 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -8.733 -16.854 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.055 4.055 4 N -0.213 5.213 5 C -0.181 4.181 6 C -0.187 4.187 7 N -0.130 5.130 8 C 0.046 3.954 9 H 0.128 0.872 10 C -0.224 4.224 11 C -0.194 4.194 12 C 0.307 3.693 13 O -0.414 6.414 14 N -0.354 5.354 15 C 0.073 3.927 16 C -0.210 4.210 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.330 5.330 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.213 1.213 28 C 0.013 3.987 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.233 0.767 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.126 0.874 48 H 0.028 0.972 49 H 0.063 0.937 50 H 0.047 0.953 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.224 -9.558 -17.066 19.686 hybrid contribution 0.617 1.441 1.257 2.009 sum -1.607 -8.117 -15.810 17.844 Atomic orbital electron populations 1.21738 0.93936 1.02306 1.02465 1.19973 0.96458 0.87547 1.03971 1.23246 1.04254 0.96609 0.81420 1.70219 1.18415 1.04312 1.28317 1.22240 1.06712 0.96335 0.92768 1.22656 1.09045 0.90230 0.96737 1.45639 1.48337 1.11823 1.07175 1.21160 0.97404 0.99586 0.77268 0.87158 1.22292 0.94189 1.02661 1.03243 1.22002 1.01211 1.01527 0.94612 1.20031 0.79042 0.83973 0.86275 1.90641 1.48798 1.25614 1.76353 1.45986 1.45564 1.29688 1.14133 1.21392 0.97031 0.93799 0.80494 1.22063 1.00792 0.95691 1.02446 1.23361 0.97163 0.98970 0.99094 1.21934 0.84922 0.90465 0.99924 1.44498 1.21410 1.20112 1.46976 1.19035 0.99020 1.02571 1.14238 0.90610 1.24762 0.98117 0.97245 1.00530 1.69761 1.26088 1.15632 1.45860 0.86151 0.80397 0.77984 0.80976 1.21555 1.21120 1.21261 1.21585 0.94227 0.90230 0.92706 0.91585 0.92846 0.91894 0.88815 0.90337 0.81547 0.81139 0.88030 0.92111 0.92182 0.88493 0.88087 0.76724 0.93255 0.90463 0.91763 0.90479 0.91903 0.87427 0.97231 0.93700 0.95279 0.95214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.04 -0.35 6.07 -27.89 -0.17 -0.52 16 3 C 0.21 2.37 7.16 -155.42 -1.11 1.26 16 4 N -0.49 -6.52 11.25 -10.82 -0.12 -6.64 16 5 C -0.03 -0.38 11.87 -17.82 -0.21 -0.59 16 6 C -0.05 -0.56 10.70 -16.56 -0.18 -0.74 16 7 N -0.45 -4.77 2.61 -106.83 -0.28 -5.05 16 8 C 0.15 1.52 2.64 -67.93 -0.18 1.34 16 9 H 0.11 1.12 6.49 -51.93 -0.34 0.78 16 10 C -0.17 -1.83 8.99 37.16 0.33 -1.50 16 11 C -0.15 -1.53 5.18 -27.88 -0.14 -1.67 16 12 C 0.52 6.91 6.76 -10.98 -0.07 6.83 16 13 O -0.54 -8.38 10.94 5.56 0.06 -8.32 16 14 N -0.70 -9.78 5.14 -45.91 -0.24 -10.02 16 15 C 0.16 2.61 0.81 -129.98 -0.11 2.51 16 16 C -0.15 -2.20 8.44 37.16 0.31 -1.89 16 17 C -0.15 -2.52 6.07 -24.58 -0.15 -2.67 16 18 C 0.15 3.46 5.87 -2.53 -0.01 3.45 16 19 N -0.60 -15.04 3.39 -170.07 -0.58 -15.61 16 20 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -26.20 10.09 55.49 0.56 -25.64 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.14 2.92 6.19 -3.06 -0.02 2.91 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.60 7.09 -51.93 -0.37 0.23 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.10 1.34 5.95 -51.92 -0.31 1.03 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 41 H 0.40 4.81 8.49 -40.82 -0.35 4.47 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.19 5.97 -51.93 -0.31 0.88 16 44 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 45 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 46 H 0.06 0.90 8.07 -51.93 -0.42 0.49 16 47 H 0.11 2.80 5.87 -51.93 -0.30 2.49 16 48 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.03 0.65 6.90 -51.93 -0.36 0.30 16 51 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 LS Contribution 398.84 15.07 6.01 6.01 Total: -1.00 -32.03 398.84 -9.80 -41.82 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.60 Total: 5.33 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.59 Total: 1.32 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.65 Total: -62.97 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.06 Total: -8.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.03 -9.80 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484045428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.134 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds