Wall clock time and date at job start Tue Mar 31 2020 18:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47589 * 2 1 4 4 N 1.30504 * 125.65057 * 270.17728 * 3 2 1 5 5 C 1.34120 * 109.25748 * 180.28632 * 4 3 2 6 6 C 1.34667 * 108.01930 * 359.72652 * 5 4 3 7 7 N 1.35041 * 125.65275 * 89.99310 * 3 2 1 8 8 C 1.46507 * 126.39495 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.46948 * 359.70273 * 8 7 3 10 10 C 1.52996 * 109.47021 * 119.70956 * 8 7 3 11 11 C 1.52998 * 109.46491 * 239.70831 * 8 7 3 12 12 C 1.50705 * 109.47054 * 174.99876 * 11 8 7 13 13 O 1.21279 * 119.99571 * 0.02562 * 12 11 8 14 14 N 1.34777 * 120.00278 * 179.97438 * 12 11 8 15 15 C 1.46495 * 120.00030 * 180.02562 * 14 12 11 16 16 C 1.53006 * 110.78061 * 303.23840 * 15 14 12 17 17 C 1.55151 * 110.72020 * 180.02562 * 15 14 12 18 18 C 1.54914 * 101.58023 * 277.13513 * 17 15 14 19 19 N 1.47420 * 104.83159 * 322.99181 * 18 17 15 20 20 C 1.36945 * 125.64792 * 204.08975 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47020 * 108.70626 * 24.35323 * 19 18 17 29 29 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47161 * 300.00645 * 1 2 3 31 31 H 1.09002 * 109.47195 * 60.00175 * 1 2 3 32 32 H 1.08999 * 109.47161 * 239.99355 * 2 1 3 33 33 H 1.09002 * 109.47195 * 119.99825 * 2 1 3 34 34 H 1.07998 * 125.99317 * 179.72428 * 5 4 3 35 35 H 1.08006 * 126.58999 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46576 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47217 * 299.99491 * 10 8 7 38 38 H 1.08999 * 109.47223 * 60.00205 * 10 8 7 39 39 H 1.09004 * 109.47758 * 55.00168 * 11 8 7 40 40 H 1.08998 * 109.47229 * 294.99596 * 11 8 7 41 41 H 0.97000 * 119.99444 * 0.02562 * 14 12 11 42 42 H 1.08995 * 109.47166 * 296.76593 * 16 15 14 43 43 H 1.09000 * 109.47069 * 56.76058 * 16 15 14 44 44 H 1.08991 * 109.47197 * 176.76236 * 16 15 14 45 45 H 1.09002 * 111.00697 * 159.06407 * 17 15 14 46 46 H 1.08994 * 111.00548 * 35.20875 * 17 15 14 47 47 H 1.08999 * 110.37083 * 204.15142 * 18 17 15 48 48 H 1.08998 * 110.45606 * 81.87777 * 18 17 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.88406 * 118.12749 * 28 19 18 51 51 H 1.09001 * 109.88743 * 239.29401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2829 2.1389 -1.0605 5 6 2.7190 3.3495 -0.6820 6 6 2.7337 3.3848 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1435 1.7374 2.4910 9 1 1.7748 0.7121 2.5199 10 6 3.4988 1.8122 3.1970 11 6 1.1477 2.6575 3.1998 12 6 0.8985 2.1477 4.5960 13 8 1.4624 1.1472 4.9857 14 7 0.0499 2.8042 5.4117 15 6 -0.1918 2.3088 6.7691 16 6 -0.6922 0.8632 6.7383 17 6 -1.1996 3.2223 7.5154 18 6 -0.2746 4.3567 8.0226 19 7 0.9843 3.6822 8.3880 20 6 1.9079 4.1478 9.2855 21 1 2.8027 3.5769 9.4847 22 6 1.6940 5.3536 9.9389 23 7 0.6033 6.0492 9.6964 24 14 2.9536 5.9885 11.1636 25 1 2.4936 7.2867 11.7188 26 1 3.1111 5.0061 12.2659 27 1 4.2578 6.1778 10.4791 28 6 1.0869 2.4298 7.6248 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0077 4.1548 -1.3411 35 1 3.0338 4.2176 1.2831 36 1 3.3861 1.4961 4.2341 37 1 4.2082 1.1567 2.6920 38 1 3.8674 2.8376 3.1681 39 1 0.2090 2.6728 2.6458 40 1 1.5569 3.6666 3.2492 41 1 -0.4007 3.6046 5.1000 42 1 -1.6525 0.8221 6.2244 43 1 0.0295 0.2401 6.2101 44 1 -0.8100 0.4978 7.7584 45 1 -1.6629 2.6940 8.3487 46 1 -1.9552 3.6103 6.8324 47 1 -0.7123 4.8417 8.8951 48 1 -0.0984 5.0865 7.2324 49 1 0.4537 6.8917 10.1534 50 1 1.9653 2.4595 6.9800 51 1 1.1548 1.5835 8.3084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484045428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:29 Heat of formation + Delta-G solvation = 25.613496 kcal Electronic energy + Delta-G solvation = -29976.365478 eV Core-core repulsion = 26104.574185 eV Total energy + Delta-G solvation = -3871.791293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.15849 -41.35684 -39.14695 -36.67414 -35.66159 -34.68767 -33.71505 -32.15341 -31.39337 -30.36304 -29.53531 -28.83753 -27.53777 -25.44704 -24.86128 -24.13395 -22.51044 -22.17537 -21.44483 -20.44655 -20.17375 -18.98976 -18.47874 -17.41923 -17.16545 -16.74716 -16.53320 -16.36993 -15.81661 -15.61222 -15.35021 -15.13876 -14.80938 -14.66177 -14.39384 -14.30428 -14.20296 -14.04566 -13.89137 -13.58910 -13.30112 -13.20714 -13.09641 -12.95936 -12.78865 -12.76470 -12.52745 -12.49968 -12.20238 -12.09697 -12.03999 -11.96345 -11.94896 -11.68543 -11.52321 -10.99086 -10.75100 -10.65420 -10.49876 -9.99345 -9.28830 -8.88817 -7.79441 -5.22695 1.10547 1.45003 1.47004 1.53624 1.59388 1.69505 2.19324 2.32103 2.47885 3.30164 3.40191 3.49505 3.58168 3.67152 3.71946 3.80029 3.93695 4.03017 4.09837 4.18262 4.24985 4.37610 4.42257 4.46097 4.50913 4.64726 4.65671 4.67239 4.68040 4.78703 4.85349 4.86252 4.88889 4.91911 5.00966 5.03953 5.09673 5.10397 5.17791 5.31050 5.37000 5.42665 5.44113 5.61394 5.69850 5.81014 5.86297 6.26544 6.30883 6.60978 7.10570 7.17313 7.28179 7.77397 8.40092 9.21512 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.002767 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.345983 B =10115.207686 C =10967.894868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C 0.199 3.801 4 N -0.527 5.527 5 C -0.051 4.051 6 C -0.054 4.054 7 N -0.446 5.446 8 C 0.156 3.844 9 H 0.113 0.887 10 C -0.161 4.161 11 C -0.141 4.141 12 C 0.521 3.479 13 O -0.560 6.560 14 N -0.703 5.703 15 C 0.172 3.828 16 C -0.142 4.142 17 C -0.129 4.129 18 C 0.155 3.845 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.060 4.060 23 N -0.944 5.944 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.279 1.279 27 H -0.282 1.282 28 C 0.138 3.862 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.410 0.590 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.073 0.927 48 H -0.006 1.006 49 H 0.248 0.752 50 H 0.011 0.989 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -9.243 -17.743 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.063 4.063 4 N -0.246 5.246 5 C -0.198 4.198 6 C -0.187 4.187 7 N -0.129 5.129 8 C 0.053 3.947 9 H 0.131 0.869 10 C -0.218 4.218 11 C -0.181 4.181 12 C 0.308 3.692 13 O -0.439 6.439 14 N -0.354 5.354 15 C 0.085 3.915 16 C -0.200 4.200 17 C -0.168 4.168 18 C 0.030 3.970 19 N -0.349 5.349 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.804 3.196 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.208 1.208 28 C 0.012 3.988 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.199 0.801 35 H 0.208 0.792 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.246 0.754 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.012 0.988 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.049 -10.073 -17.983 20.837 hybrid contribution 0.938 1.588 1.519 2.389 sum -2.111 -8.485 -16.465 18.642 Atomic orbital electron populations 1.21696 0.93103 1.03284 1.01790 1.20104 0.97109 0.86203 1.04649 1.23735 1.03820 0.97468 0.81265 1.70209 1.19658 1.05325 1.29453 1.22615 1.07042 0.96460 0.93670 1.22999 1.08364 0.90598 0.96751 1.45643 1.48290 1.11872 1.07051 1.21067 0.96835 0.99854 0.76975 0.86863 1.22193 0.94950 1.02721 1.01981 1.21922 1.02197 1.01530 0.92461 1.20512 0.78112 0.83429 0.87175 1.90645 1.49427 1.26799 1.77063 1.45910 1.46116 1.30297 1.13088 1.21141 0.94118 0.95191 0.81066 1.21979 1.01734 0.93607 1.02728 1.23200 0.96848 0.96809 0.99917 1.21740 0.85131 0.92015 0.98087 1.44775 1.21779 1.21397 1.46992 1.19321 0.99652 1.02970 1.15117 0.91162 1.25519 0.99982 0.97532 1.02268 1.70004 1.27283 1.15543 1.46493 0.85200 0.78281 0.77222 0.78913 1.21564 1.20486 1.20809 1.21683 0.96242 0.88281 0.92567 0.89804 0.93058 0.92934 0.88486 0.89292 0.80100 0.79202 0.90194 0.91912 0.91981 0.86413 0.87211 0.75433 0.90564 0.91297 0.91832 0.90145 0.88215 0.90907 0.98799 0.94216 0.97068 0.96243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 71.98 0.71 -1.19 16 2 C -0.04 -0.66 6.07 29.85 0.18 -0.47 16 3 C 0.20 4.30 7.16 138.13 0.99 5.29 16 4 N -0.53 -13.45 11.25 -188.14 -2.12 -15.57 16 5 C -0.05 -1.11 11.87 83.52 0.99 -0.12 16 6 C -0.05 -1.05 10.70 83.09 0.89 -0.16 16 7 N -0.45 -8.73 2.61 -491.91 -1.28 -10.01 16 8 C 0.16 2.89 2.64 44.99 0.12 3.01 16 9 H 0.11 2.08 6.49 -2.39 -0.02 2.06 16 10 C -0.16 -3.39 8.99 71.98 0.65 -2.74 16 11 C -0.14 -2.47 5.18 29.85 0.15 -2.32 16 12 C 0.52 12.84 6.76 87.66 0.59 13.43 16 13 O -0.56 -16.92 10.94 -3.03 -0.03 -16.95 16 14 N -0.70 -18.05 5.14 -417.55 -2.15 -20.20 16 15 C 0.17 5.36 0.81 4.80 0.00 5.37 16 16 C -0.14 -3.78 8.44 71.98 0.61 -3.17 16 17 C -0.13 -4.17 6.07 31.99 0.19 -3.98 16 18 C 0.16 7.07 5.87 86.86 0.51 7.58 16 19 N -0.62 -31.53 3.39 -691.97 -2.35 -33.88 16 20 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 23 N -0.94 -54.43 10.09 21.65 0.22 -54.21 16 24 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 C 0.14 5.85 6.19 86.73 0.54 6.39 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.19 7.09 -2.39 -0.02 1.18 16 34 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.08 2.09 5.95 -2.38 -0.01 2.07 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.26 7.95 -2.39 -0.02 1.24 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.80 8.09 -2.39 -0.02 1.79 16 41 H 0.41 8.78 8.49 -92.71 -0.79 7.99 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.99 5.97 -2.39 -0.01 1.97 16 44 H 0.06 1.69 8.07 -2.39 -0.02 1.68 16 45 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 46 H 0.10 2.51 8.07 -2.39 -0.02 2.50 16 47 H 0.07 3.86 5.87 -2.39 -0.01 3.85 16 48 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 50 H 0.01 0.52 6.90 -2.39 -0.02 0.50 16 51 H 0.02 0.86 7.77 -2.39 -0.02 0.84 16 Total: -1.00 -70.70 398.84 2.91 -67.79 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.13 Total: 24.41 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 8.46 Total: 11.30 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -7.67 Total: -133.87 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.03 Total: -16.95 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.70 2.91 -67.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484045428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.408 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds